Wall clock time and date at job start Sun Mar 7 2021 02:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.34457 * 126.48032 * 104.68331 * 4 2 1 6 6 N 1.36560 * 109.98594 * 179.86743 * 5 4 2 7 7 C 1.37836 * 109.85918 * 0.41609 * 6 5 4 8 8 C 1.38646 * 133.38335 * 179.72944 * 7 6 5 9 9 C 1.39314 * 119.66848 * 180.02562 * 8 7 6 10 10 C 1.47577 * 119.83117 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00228 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99792 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00103 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47273 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46922 * 180.02562 * 14 13 12 16 16 H 1.08998 * 112.85229 * 314.66879 * 15 14 13 17 17 C 1.53781 * 113.61613 * 85.86996 * 15 14 13 18 18 C 1.53955 * 87.02276 * 139.94905 * 17 15 14 19 19 H 1.08995 * 113.74366 * 220.05481 * 18 17 15 20 20 F 1.39893 * 113.53640 * 89.18778 * 18 17 15 21 21 C 1.53785 * 87.10957 * 334.63621 * 18 17 15 22 22 C 1.40203 * 120.33892 * 359.97438 * 9 8 7 23 23 C 1.36238 * 120.37201 * 0.02562 * 22 9 8 24 24 C 1.39869 * 119.96142 * 359.97438 * 23 22 9 25 25 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 26 26 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 27 27 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 28 28 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 29 29 H 1.08004 * 125.00628 * 0.03380 * 5 4 2 30 30 H 0.96995 * 125.07403 * 180.14709 * 6 5 4 31 31 H 1.08002 * 120.16452 * 0.02562 * 8 7 6 32 32 H 0.97003 * 120.00624 * 0.02562 * 12 10 9 33 33 H 1.08998 * 109.47303 * 300.00525 * 13 12 10 34 34 H 1.09003 * 109.46459 * 60.00412 * 13 12 10 35 35 H 1.08998 * 109.47498 * 300.00544 * 14 13 12 36 36 H 1.09005 * 109.46766 * 60.00332 * 14 13 12 37 37 H 1.09000 * 113.61175 * 254.53178 * 17 15 14 38 38 H 1.08999 * 113.61116 * 25.42829 * 17 15 14 39 39 H 1.08995 * 113.61574 * 270.81135 * 21 18 17 40 40 H 1.08997 * 113.68650 * 139.92011 * 21 18 17 41 41 H 1.07999 * 119.81409 * 180.02562 * 22 9 8 42 42 H 1.08004 * 120.01652 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 2.4564 -0.1361 -2.3268 6 7 2.8030 -1.0948 -3.2354 7 6 2.4945 -2.3433 -2.7395 8 6 2.6304 -3.6281 -3.2426 9 6 2.2125 -4.7156 -2.4787 10 6 2.3560 -6.0848 -3.0104 11 8 2.8375 -6.2615 -4.1128 12 7 1.9533 -7.1393 -2.2740 13 6 2.0952 -8.4985 -2.8021 14 6 1.5669 -9.5023 -1.7754 15 6 1.7157 -10.9217 -2.3266 16 1 1.3890 -11.0098 -3.3628 17 6 3.0966 -11.5441 -2.0611 18 6 2.3572 -12.8626 -1.7695 19 1 2.7683 -13.4193 -0.9275 20 9 2.1646 -13.6577 -2.9043 21 6 1.1343 -12.0052 -1.4031 22 6 1.6573 -4.5160 -1.2068 23 6 1.5201 -3.2569 -0.7049 24 6 1.9350 -2.1550 -1.4599 25 1 -0.3934 0.4417 0.7649 26 1 1.7923 -0.5138 0.8901 27 1 3.5346 1.7703 0.0322 28 1 1.5616 2.4678 -1.2086 29 1 2.5873 0.9267 -2.4671 30 1 3.2028 -0.9227 -4.1022 31 1 3.0581 -3.7851 -4.2218 32 1 1.5688 -6.9984 -1.3947 33 1 1.5258 -8.5903 -3.7269 34 1 3.1472 -8.7028 -3.0013 35 1 2.1367 -9.4103 -0.8508 36 1 0.5149 -9.2981 -1.5757 37 1 3.7339 -11.5858 -2.9444 38 1 3.6038 -11.1264 -1.1914 39 1 1.1040 -11.7139 -0.3533 40 1 0.1889 -12.4178 -1.7554 41 1 1.3365 -5.3652 -0.6217 42 1 1.0913 -3.1098 0.2754 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_12335838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:24 Heat of formation + Delta-G solvation = -35.166468 kcal Electronic energy + Delta-G solvation = -25281.074597 eV Core-core repulsion = 21336.025066 eV Total energy + Delta-G solvation = -3945.049531 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.67030 -42.56729 -40.94858 -39.38515 -37.88571 -37.48044 -36.21113 -33.43884 -32.23995 -30.85336 -30.37906 -26.88251 -26.58801 -26.15315 -24.32614 -23.72729 -22.79824 -21.55675 -20.67841 -20.41755 -19.33696 -18.42065 -18.22418 -17.53942 -17.31734 -16.98260 -16.79636 -16.57270 -16.00329 -15.77142 -15.67344 -15.49329 -15.35174 -15.08611 -14.88521 -14.77314 -14.61540 -14.51925 -13.84976 -13.78665 -13.49992 -13.27341 -13.09131 -12.75942 -12.57949 -12.50083 -12.16183 -11.96898 -11.92455 -11.80999 -11.30642 -11.17553 -10.93047 -10.88378 -10.23988 -10.14723 -9.47125 -8.91568 -4.91283 -0.42137 0.30358 1.22072 1.37986 1.71372 1.80267 1.84531 2.01905 2.17249 2.79976 3.28874 3.35547 3.47871 3.57029 3.61299 3.65067 3.70263 3.75892 3.87796 4.03192 4.06137 4.11164 4.20653 4.25402 4.29863 4.42858 4.44298 4.50914 4.59886 4.71230 4.74431 4.76578 4.83073 4.90505 4.93833 5.03112 5.11519 5.15497 5.19448 5.31418 5.34068 5.42065 5.50288 5.51146 5.88220 6.34995 6.43556 7.03934 7.09816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.044 4.044 3 Si 0.780 3.220 4 C -0.187 4.187 5 C 0.065 3.935 6 N -0.580 5.580 7 C 0.066 3.934 8 C -0.071 4.071 9 C -0.131 4.131 10 C 0.559 3.441 11 O -0.586 6.586 12 N -0.709 5.709 13 C 0.118 3.882 14 C -0.107 4.107 15 C -0.110 4.110 16 H 0.081 0.919 17 C -0.158 4.158 18 C 0.044 3.956 19 H 0.113 0.887 20 F -0.222 7.222 21 C -0.147 4.147 22 C -0.105 4.105 23 C -0.075 4.075 24 C -0.083 4.083 25 H 0.400 0.600 26 H 0.086 0.914 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.185 0.815 30 H 0.432 0.568 31 H 0.127 0.873 32 H 0.417 0.583 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.162 0.838 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 3.513 9.726 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.154 4.154 3 Si 0.685 3.315 4 C -0.195 4.195 5 C -0.064 4.064 6 N -0.183 5.183 7 C -0.041 4.041 8 C -0.093 4.093 9 C -0.135 4.135 10 C 0.347 3.653 11 O -0.468 6.468 12 N -0.361 5.361 13 C -0.005 4.005 14 C -0.145 4.145 15 C -0.129 4.129 16 H 0.099 0.901 17 C -0.195 4.195 18 C 0.008 3.992 19 H 0.131 0.869 20 F -0.203 7.203 21 C -0.185 4.185 22 C -0.124 4.124 23 C -0.093 4.093 24 C -0.088 4.088 25 H 0.251 0.749 26 H 0.104 0.896 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.202 0.798 30 H 0.272 0.728 31 H 0.145 0.855 32 H 0.256 0.744 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.179 0.821 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.764 3.641 7.842 8.679 hybrid contribution 0.297 -0.451 -1.121 1.244 sum -0.467 3.190 6.721 7.454 Atomic orbital electron populations 1.86485 1.17727 1.82363 1.51129 1.24164 0.85319 1.10290 0.95584 0.94045 0.77214 0.74714 0.85529 1.20105 1.10027 0.91540 0.97782 1.22007 1.00231 0.94837 0.89302 1.41732 1.54486 1.03495 1.18630 1.18204 1.03882 0.86610 0.95360 1.20120 1.00314 0.88645 1.00193 1.19513 1.05622 0.91611 0.96804 1.18379 0.77162 0.85519 0.84224 1.90771 1.46839 1.86897 1.22274 1.45778 1.63239 1.05686 1.21413 1.21412 1.01188 0.80217 0.97684 1.21699 1.03089 0.91577 0.98127 1.22471 0.96494 0.94050 0.99851 0.90096 1.23758 0.97066 0.94816 1.03888 1.22781 0.99985 0.90964 0.85495 0.86882 1.92772 1.96221 1.76316 1.55012 1.23609 0.97274 0.95285 1.02314 1.20983 0.99292 0.98311 0.93812 1.20481 0.98332 0.90140 1.00390 1.19566 1.01367 0.93895 0.93969 0.74891 0.89579 1.21924 1.21811 0.79813 0.72761 0.85520 0.74403 0.92860 0.92335 0.88717 0.89425 0.91499 0.86138 0.85739 0.90738 0.82070 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.50 12.86 -148.98 -1.92 -1.41 16 2 C -0.04 0.06 3.05 71.23 0.22 0.28 16 3 Si 0.78 -3.36 30.80 68.60 2.11 -1.25 16 4 C -0.19 -0.86 5.60 -18.65 -0.10 -0.97 16 5 C 0.07 0.20 10.43 83.09 0.87 1.06 16 6 N -0.58 -1.68 6.07 -187.71 -1.14 -2.82 16 7 C 0.07 0.46 7.26 38.95 0.28 0.74 16 8 C -0.07 -0.57 9.61 22.63 0.22 -0.35 16 9 C -0.13 -0.77 5.87 -20.08 -0.12 -0.89 16 10 C 0.56 4.50 7.76 86.71 0.67 5.17 16 11 O -0.59 -9.94 16.31 -3.99 -0.07 -10.00 16 12 N -0.71 0.03 5.50 -466.22 -2.57 -2.53 16 13 C 0.12 -0.01 5.67 86.38 0.49 0.48 16 14 C -0.11 0.73 5.15 30.59 0.16 0.89 16 15 C -0.11 0.40 3.62 -10.27 -0.04 0.37 16 16 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 17 C -0.16 0.53 7.54 31.18 0.24 0.77 16 18 C 0.04 -0.07 5.70 31.18 0.18 0.11 16 19 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 20 F -0.22 -1.50 17.38 44.97 0.78 -0.72 16 21 C -0.15 0.74 7.54 31.12 0.23 0.98 16 22 C -0.10 -0.02 9.46 22.28 0.21 0.19 16 23 C -0.08 -0.15 10.03 22.20 0.22 0.07 16 24 C -0.08 -0.53 6.35 -20.14 -0.13 -0.65 16 25 H 0.40 -4.67 8.74 -74.06 -0.65 -5.32 16 26 H 0.09 -0.42 7.96 -2.39 -0.02 -0.44 16 27 H -0.29 -0.46 7.11 99.48 0.71 0.24 16 28 H -0.29 -0.50 7.04 99.48 0.70 0.20 16 29 H 0.19 -0.22 6.31 -2.91 -0.02 -0.24 16 30 H 0.43 -1.19 8.96 -92.71 -0.83 -2.02 16 31 H 0.13 1.12 7.62 -2.91 -0.02 1.10 16 32 H 0.42 -2.97 6.46 -92.71 -0.60 -3.57 16 33 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.09 -0.97 7.87 -2.39 -0.02 -0.99 16 36 H 0.09 -0.75 8.14 -2.38 -0.02 -0.77 16 37 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.12 -0.91 7.92 -2.39 -0.02 -0.93 16 39 H 0.12 -1.22 8.10 -2.39 -0.02 -1.24 16 40 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.16 -1.27 6.36 -2.91 -0.02 -1.29 16 42 H 0.15 -0.41 8.06 -2.91 -0.02 -0.43 16 Total: 0.00 -26.63 355.04 -0.16 -26.79 By element: Atomic # 1 Polarization: -15.33 SS G_CDS: -0.97 Total: -16.30 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 3.60 Total: 8.24 kcal Atomic # 7 Polarization: -1.65 SS G_CDS: -3.70 Total: -5.35 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.98 Total: -11.42 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.78 Total: -0.72 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: 2.11 Total: -1.25 kcal Total: -26.63 -0.16 -26.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_12335838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.377 kcal (2) G-P(sol) polarization free energy of solvation -26.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds