Wall clock time and date at job start Sun Mar 7 2021 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34845 * 125.90372 * 2 1 4 4 C 1.40945 * 107.46544 * 180.22159 * 3 2 1 5 5 C 1.50703 * 126.26534 * 179.77004 * 4 3 2 6 6 O 1.42897 * 109.46994 * 254.99839 * 5 4 3 7 7 Si 1.86293 * 109.47058 * 15.00315 * 5 4 3 8 8 C 1.34850 * 107.46722 * 359.77053 * 4 3 2 9 9 C 1.50699 * 125.89766 * 179.97438 * 8 4 3 10 10 N 1.36568 * 125.89139 * 179.82829 * 2 1 3 11 11 C 1.40224 * 125.67432 * 0.03912 * 10 2 1 12 12 C 1.38555 * 119.99130 * 294.69022 * 11 10 2 13 13 C 1.39501 * 119.78113 * 179.97438 * 12 11 10 14 14 C 1.47856 * 120.10927 * 179.97438 * 13 12 11 15 15 O 1.21559 * 120.00215 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00183 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00546 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47604 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47252 * 179.97438 * 18 17 16 20 20 H 1.09003 * 112.85118 * 314.66965 * 19 18 17 21 21 C 1.53782 * 113.61320 * 85.86562 * 19 18 17 22 22 C 1.53953 * 87.01912 * 139.94978 * 21 19 18 23 23 H 1.08997 * 113.74499 * 220.05293 * 22 21 19 24 24 F 1.39904 * 113.53441 * 89.18891 * 22 21 19 25 25 C 1.53775 * 87.11155 * 334.63755 * 22 21 19 26 26 C 1.39568 * 119.77602 * 359.97438 * 13 12 11 27 27 C 1.38014 * 119.98905 * 0.02562 * 26 13 12 28 28 C 1.38228 * 120.21429 * 0.02562 * 27 26 13 29 29 H 1.09002 * 109.47260 * 270.17200 * 1 2 3 30 30 H 1.09005 * 109.46362 * 30.16948 * 1 2 3 31 31 H 1.08993 * 109.47642 * 150.16779 * 1 2 3 32 32 H 1.07994 * 126.26940 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46848 * 134.99724 * 5 4 3 34 34 H 0.96701 * 113.99654 * 179.97438 * 6 5 4 35 35 H 1.48507 * 110.00160 * 178.68252 * 7 5 4 36 36 H 1.48508 * 110.00097 * 299.99665 * 7 5 4 37 37 H 1.08997 * 109.47449 * 270.04131 * 9 8 4 38 38 H 1.09004 * 109.47336 * 30.04676 * 9 8 4 39 39 H 1.09005 * 109.47152 * 150.04498 * 9 8 4 40 40 H 1.08005 * 120.10637 * 359.72689 * 12 11 10 41 41 H 0.97004 * 119.99591 * 0.02562 * 16 14 13 42 42 H 1.09004 * 109.47121 * 300.00320 * 17 16 14 43 43 H 1.09007 * 109.46986 * 59.99655 * 17 16 14 44 44 H 1.09000 * 109.46705 * 300.00142 * 18 17 16 45 45 H 1.09002 * 109.46797 * 59.99970 * 18 17 16 46 46 H 1.08997 * 113.61251 * 254.52896 * 21 19 18 47 47 H 1.08999 * 113.61715 * 25.43030 * 21 19 18 48 48 H 1.09001 * 113.61532 * 270.80841 * 25 22 21 49 49 H 1.09004 * 113.68971 * 139.91802 * 25 22 21 50 50 H 1.08004 * 120.00675 * 180.02562 * 26 13 12 51 51 H 1.08005 * 119.89761 * 180.02562 * 27 26 13 52 52 H 1.07998 * 119.88554 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2978 1.0923 0.0000 4 6 3.6348 0.6465 -0.0052 5 6 4.8648 1.5172 -0.0120 6 8 5.4493 1.5058 -1.3159 7 14 4.3934 3.2614 0.4421 8 6 3.6120 -0.7018 -0.0030 9 6 4.8176 -1.6060 -0.0075 10 7 2.3076 -1.1064 0.0033 11 6 1.8642 -2.4367 0.0065 12 6 1.1691 -2.9324 1.0977 13 6 0.7295 -4.2563 1.0961 14 6 -0.0125 -4.7930 2.2569 15 8 -0.2408 -4.0801 3.2147 16 7 -0.4357 -6.0726 2.2532 17 6 -1.1713 -6.6042 3.4032 18 6 -1.5317 -8.0687 3.1454 19 6 -2.2994 -8.6240 4.3467 20 1 -1.8449 -8.3556 5.3004 21 6 -3.8125 -8.3559 4.2882 22 6 -4.0049 -9.7805 4.8392 23 1 -4.8347 -10.3195 4.3820 24 9 -4.0218 -9.8413 6.2368 25 6 -2.6368 -10.1194 4.2243 26 6 0.9925 -5.0725 -0.0051 27 6 1.6857 -4.5691 -1.0871 28 6 2.1220 -3.2574 -1.0845 29 1 -0.3634 0.0031 1.0277 30 1 -0.3632 0.8885 -0.5165 31 1 -0.3634 -0.8914 -0.5112 32 1 1.9671 2.1203 -0.0004 33 1 5.5844 1.1352 0.7122 34 1 6.2470 2.0469 -1.3940 35 1 5.6023 4.1235 0.4701 36 1 3.4125 3.7939 -0.5376 37 1 5.1038 -1.8250 -1.0362 38 1 5.6445 -1.1116 0.5023 39 1 4.5766 -2.5356 0.5082 40 1 0.9717 -2.2970 1.9485 41 1 -0.2532 -6.6415 1.4891 42 1 -0.5495 -6.5351 4.2958 43 1 -2.0834 -6.0256 3.5501 44 1 -2.1533 -8.1381 2.2528 45 1 -0.6194 -8.6469 2.9988 46 1 -4.1441 -7.5740 4.9714 47 1 -4.1938 -8.2242 3.2756 48 1 -2.6960 -10.4708 3.1942 49 1 -2.0196 -10.7592 4.8550 50 1 0.6535 -6.0980 -0.0105 51 1 1.8881 -5.2019 -1.9386 52 1 2.6637 -2.8688 -1.9342 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_12335854.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:34 Heat of formation + Delta-G solvation = -14.915066 kcal Electronic energy + Delta-G solvation = -32897.014253 eV Core-core repulsion = 28358.003891 eV Total energy + Delta-G solvation = -4539.010361 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -48.66504 -42.90592 -41.30172 -39.65133 -39.19061 -37.79738 -36.26195 -34.50347 -33.76405 -32.64087 -31.65627 -30.38400 -30.16524 -27.27340 -26.88337 -26.44562 -24.87713 -24.41610 -23.65361 -22.81457 -21.92951 -21.03720 -20.45360 -20.08107 -18.69390 -18.45537 -17.66883 -17.38723 -17.22857 -17.12094 -16.81867 -16.68484 -16.35895 -15.97297 -15.85105 -15.62027 -15.53680 -15.24018 -15.02734 -14.86458 -14.78130 -14.55058 -14.24419 -14.14001 -13.83230 -13.77552 -13.70779 -13.53541 -13.46140 -13.24376 -13.21536 -13.09974 -12.92940 -12.59031 -12.53373 -12.43024 -12.42485 -11.96369 -11.91239 -11.81211 -11.33956 -11.17706 -10.94031 -10.48188 -10.36156 -10.30459 -10.10254 -9.54801 -8.86420 -4.86410 -0.44474 -0.05537 1.06985 1.38797 1.58913 1.63264 1.71177 1.73474 2.01097 2.04293 2.58022 3.29043 3.35701 3.46531 3.60152 3.61305 3.67144 3.68451 3.72969 3.86627 3.89892 3.93893 3.96284 4.10324 4.11529 4.18417 4.24619 4.25827 4.37914 4.42966 4.45380 4.53613 4.60116 4.62158 4.64570 4.68534 4.71934 4.73870 4.75259 4.83417 4.93455 4.96484 4.98429 5.00380 5.03576 5.06668 5.11486 5.14083 5.17043 5.19550 5.30677 5.32551 5.50536 5.53696 5.93532 6.11220 6.38776 6.45026 6.69942 7.05839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.014 3.986 3 C -0.201 4.201 4 C -0.169 4.169 5 C -0.045 4.045 6 O -0.558 6.558 7 Si 0.762 3.238 8 C 0.038 3.962 9 C -0.078 4.078 10 N -0.405 5.405 11 C 0.096 3.904 12 C -0.063 4.063 13 C -0.132 4.132 14 C 0.555 3.445 15 O -0.581 6.581 16 N -0.707 5.707 17 C 0.118 3.882 18 C -0.107 4.107 19 C -0.110 4.110 20 H 0.080 0.920 21 C -0.158 4.158 22 C 0.042 3.958 23 H 0.112 0.888 24 F -0.223 7.223 25 C -0.147 4.147 26 C -0.063 4.063 27 C -0.100 4.100 28 C -0.086 4.086 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.146 0.854 33 H 0.083 0.917 34 H 0.389 0.611 35 H -0.284 1.284 36 H -0.302 1.302 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.418 0.582 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.121 0.879 48 H 0.125 0.875 49 H 0.073 0.927 50 H 0.172 0.828 51 H 0.175 0.825 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -7.606 -4.520 8.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.224 4.224 4 C -0.175 4.175 5 C -0.154 4.154 6 O -0.368 6.368 7 Si 0.668 3.332 8 C -0.071 4.071 9 C -0.135 4.135 10 N -0.080 5.080 11 C 0.007 3.993 12 C -0.084 4.084 13 C -0.136 4.136 14 C 0.343 3.657 15 O -0.462 6.462 16 N -0.359 5.359 17 C -0.005 4.005 18 C -0.145 4.145 19 C -0.129 4.129 20 H 0.099 0.901 21 C -0.195 4.195 22 C 0.006 3.994 23 H 0.130 0.870 24 F -0.204 7.204 25 C -0.185 4.185 26 C -0.081 4.081 27 C -0.118 4.118 28 C -0.105 4.105 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.164 0.836 33 H 0.101 0.899 34 H 0.239 0.761 35 H -0.211 1.211 36 H -0.230 1.230 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.257 0.743 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.092 0.908 50 H 0.189 0.811 51 H 0.193 0.807 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.768 -7.011 -4.136 8.176 hybrid contribution 0.893 0.314 -0.558 1.098 sum 0.125 -6.697 -4.694 8.180 Atomic orbital electron populations 1.20360 0.86668 1.03700 1.03197 1.20733 0.94437 0.84976 1.09234 1.20757 0.92230 0.98136 1.11315 1.18759 0.93778 0.92263 1.12721 1.24164 0.94531 1.09698 0.87038 1.86582 1.46722 1.72415 1.31048 0.93928 0.78571 0.72400 0.88318 1.20606 0.84590 0.94338 1.07591 1.20323 0.92785 0.97302 1.03102 1.41481 1.05579 1.03332 1.57657 1.17655 1.02157 0.83600 0.95851 1.21132 0.95604 0.95120 0.96498 1.19734 1.03293 0.94415 0.96153 1.18455 0.78641 0.82357 0.86265 1.90803 1.58608 1.59519 1.37291 1.45760 1.56759 1.11318 1.22110 1.21418 0.95668 0.95434 0.88024 1.21698 1.01844 0.92394 0.98520 1.22471 0.95159 0.96115 0.99128 0.90112 1.23759 0.96592 0.95654 1.03524 1.22793 1.01330 1.00167 0.75070 0.86975 1.92776 1.97831 1.97398 1.32350 1.23607 0.94892 0.96419 1.03554 1.21800 0.94806 1.00625 0.90868 1.21441 0.96511 0.94160 0.99666 1.21642 0.98080 0.94669 0.96100 0.90549 0.88915 0.91868 0.83618 0.89880 0.76106 1.21122 1.22990 0.90461 0.89359 0.91600 0.86347 0.74295 0.92813 0.92305 0.88638 0.89299 0.91524 0.86093 0.85706 0.90777 0.81064 0.80723 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 9.94 71.24 0.71 0.46 16 2 C 0.01 0.11 6.81 41.04 0.28 0.39 16 3 C -0.20 -1.71 9.27 22.15 0.21 -1.50 16 4 C -0.17 -1.40 5.39 -19.98 -0.11 -1.51 16 5 C -0.04 -0.19 2.59 71.24 0.18 -0.01 16 6 O -0.56 -3.26 12.86 -148.98 -1.92 -5.18 16 7 Si 0.76 2.26 30.84 68.60 2.12 4.38 16 8 C 0.04 0.28 6.81 41.04 0.28 0.56 16 9 C -0.08 -0.17 9.72 71.24 0.69 0.52 16 10 N -0.41 -2.85 2.79 -320.37 -0.89 -3.74 16 11 C 0.10 0.34 4.65 38.04 0.18 0.52 16 12 C -0.06 -0.30 9.28 22.65 0.21 -0.09 16 13 C -0.13 -0.06 5.87 -20.11 -0.12 -0.18 16 14 C 0.55 2.21 7.77 86.79 0.67 2.89 16 15 O -0.58 -8.17 16.35 -3.90 -0.06 -8.24 16 16 N -0.71 2.87 5.51 -465.94 -2.57 0.31 16 17 C 0.12 -0.35 5.67 86.38 0.49 0.14 16 18 C -0.11 1.00 5.15 30.59 0.16 1.16 16 19 C -0.11 0.60 3.62 -10.27 -0.04 0.57 16 20 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 21 C -0.16 0.77 7.54 31.18 0.24 1.01 16 22 C 0.04 -0.12 5.70 31.18 0.18 0.06 16 23 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 24 F -0.22 -1.28 17.38 44.97 0.78 -0.50 16 25 C -0.15 0.97 7.54 31.12 0.23 1.20 16 26 C -0.06 0.47 9.54 22.54 0.21 0.68 16 27 C -0.10 0.76 10.02 22.21 0.22 0.98 16 28 C -0.09 0.14 9.72 22.44 0.22 0.36 16 29 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 0.05 8.14 -2.38 -0.02 0.03 16 31 H 0.06 0.17 7.83 -2.39 -0.02 0.15 16 32 H 0.15 0.94 6.55 -2.91 -0.02 0.92 16 33 H 0.08 0.03 7.50 -2.39 -0.02 0.01 16 34 H 0.39 -1.00 8.74 -74.06 -0.65 -1.64 16 35 H -0.28 -1.62 7.11 99.48 0.71 -0.92 16 36 H -0.30 -3.16 7.06 99.48 0.70 -2.46 16 37 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.09 0.04 7.50 -2.38 -0.02 0.02 16 39 H 0.07 0.08 7.83 -2.38 -0.02 0.06 16 40 H 0.12 1.11 7.65 -2.91 -0.02 1.09 16 41 H 0.42 -4.98 6.50 -92.71 -0.60 -5.59 16 42 H 0.05 0.05 8.14 -2.38 -0.02 0.03 16 43 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 44 H 0.10 -1.23 7.88 -2.39 -0.02 -1.25 16 45 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 46 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.12 -1.11 7.92 -2.39 -0.02 -1.13 16 48 H 0.12 -1.43 8.10 -2.39 -0.02 -1.44 16 49 H 0.07 -0.33 8.14 -2.38 -0.02 -0.35 16 50 H 0.17 -2.68 6.40 -2.91 -0.02 -2.70 16 51 H 0.18 -2.45 8.06 -2.91 -0.02 -2.48 16 52 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 Total: 0.00 -26.83 430.41 2.28 -24.54 By element: Atomic # 1 Polarization: -19.51 SS G_CDS: -0.27 Total: -19.78 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.10 Total: 8.21 kcal Atomic # 7 Polarization: 0.02 SS G_CDS: -3.46 Total: -3.43 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.98 Total: -13.42 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.78 Total: -0.50 kcal Atomic # 14 Polarization: 2.26 SS G_CDS: 2.12 Total: 4.38 kcal Total: -26.83 2.28 -24.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_12335854.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.626 kcal (2) G-P(sol) polarization free energy of solvation -26.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds