Wall clock time and date at job start Sun Mar 7 2021 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34805 * 125.90761 * 2 1 4 4 C 1.40989 * 107.48808 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.25812 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47195 * 255.02619 * 5 4 3 7 7 Si 1.86295 * 109.47026 * 15.02690 * 5 4 3 8 8 C 1.34812 * 107.48631 * 0.02562 * 4 3 2 9 9 C 1.50694 * 125.90449 * 180.02562 * 8 4 3 10 10 N 1.36655 * 125.89696 * 180.02562 * 2 1 3 11 11 C 1.39664 * 125.68293 * 359.71371 * 10 2 1 12 12 C 1.40192 * 120.15527 * 269.74721 * 11 10 2 13 13 C 1.47575 * 120.19563 * 359.97438 * 12 11 10 14 14 O 1.21595 * 119.99752 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00599 * 179.97438 * 13 12 11 16 16 C 1.46505 * 120.00060 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46781 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47104 * 180.02562 * 17 16 15 19 19 H 1.09009 * 112.84583 * 316.19288 * 18 17 16 20 20 C 1.53779 * 113.61885 * 87.50029 * 18 17 16 21 21 C 1.53781 * 87.08339 * 139.98143 * 20 18 17 22 22 H 1.08990 * 113.69056 * 220.00797 * 21 20 18 23 23 F 1.39902 * 113.61029 * 89.11367 * 21 20 18 24 24 C 1.53784 * 87.08185 * 334.57013 * 21 20 18 25 25 C 1.39665 * 119.61593 * 179.70411 * 12 11 10 26 26 C 1.37831 * 119.91291 * 0.59350 * 25 12 11 27 27 C 1.38531 * 120.31321 * 359.67944 * 26 25 12 28 28 C 1.38070 * 120.38947 * 0.02602 * 27 26 25 29 29 H 1.09002 * 109.46845 * 269.97770 * 1 2 3 30 30 H 1.08999 * 109.46542 * 29.96849 * 1 2 3 31 31 H 1.08993 * 109.47292 * 149.97114 * 1 2 3 32 32 H 1.07998 * 126.25324 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47088 * 135.02457 * 5 4 3 34 34 H 0.96700 * 114.00222 * 180.02562 * 6 5 4 35 35 H 1.48503 * 110.00075 * 299.99813 * 7 5 4 36 36 H 1.48493 * 110.00568 * 61.31861 * 7 5 4 37 37 H 1.09000 * 109.47155 * 269.95712 * 9 8 4 38 38 H 1.09005 * 109.47388 * 29.95726 * 9 8 4 39 39 H 1.08997 * 109.47518 * 149.95701 * 9 8 4 40 40 H 0.97000 * 119.99905 * 0.02562 * 15 13 12 41 41 H 1.09001 * 109.46788 * 300.00147 * 16 15 13 42 42 H 1.08994 * 109.46863 * 60.00224 * 16 15 13 43 43 H 1.08998 * 109.47123 * 300.00231 * 17 16 15 44 44 H 1.09004 * 109.47569 * 60.00291 * 17 16 15 45 45 H 1.09000 * 113.61546 * 254.53280 * 20 18 17 46 46 H 1.08999 * 113.61034 * 25.43362 * 20 18 17 47 47 H 1.08996 * 113.61769 * 270.88496 * 24 21 20 48 48 H 1.08993 * 113.69302 * 139.98633 * 24 21 20 49 49 H 1.07997 * 120.04310 * 180.30187 * 25 12 11 50 50 H 1.08001 * 119.84072 * 179.70546 * 26 25 12 51 51 H 1.07995 * 119.80627 * 179.97438 * 27 26 25 52 52 H 1.07995 * 119.95979 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0919 0.0000 4 6 3.6353 0.6464 -0.0006 5 6 4.8649 1.5177 -0.0003 6 8 5.4545 1.5100 -1.3019 7 14 4.3908 3.2605 0.4564 8 6 3.6133 -0.7016 -0.0015 9 6 4.8194 -1.6050 -0.0019 10 7 2.3083 -1.1070 -0.0005 11 6 1.8670 -2.4321 0.0046 12 6 1.6544 -3.0989 1.2193 13 6 1.8962 -2.4051 2.4991 14 8 2.2814 -1.2518 2.5021 15 7 1.6901 -3.0497 3.6647 16 6 1.9307 -2.3609 4.9352 17 6 1.6236 -3.3096 6.0956 18 6 1.8743 -2.5901 7.4224 19 1 2.7996 -2.0139 7.4232 20 6 0.6566 -1.8044 7.9369 21 6 1.0280 -2.3028 9.3435 22 1 0.1672 -2.5836 9.9501 23 9 1.9178 -1.4610 10.0194 24 6 1.7116 -3.4958 8.6546 25 6 1.2071 -4.4220 1.2113 26 6 0.9895 -5.0667 0.0127 27 6 1.2060 -4.4065 -1.1858 28 6 1.6424 -3.0966 -1.1927 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3632 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.9668 2.1199 0.0004 33 1 5.5818 1.1341 0.7257 34 1 6.2526 2.0510 -1.3754 35 1 3.4136 3.7950 -0.5258 36 1 3.8055 3.2868 1.8209 37 1 5.1100 -1.8228 -1.0296 38 1 5.6440 -1.1107 0.5118 39 1 4.5768 -2.5352 0.5119 40 1 1.3832 -3.9698 3.6624 41 1 2.9739 -2.0491 4.9875 42 1 1.2858 -1.4847 5.0012 43 1 0.5806 -3.6218 6.0433 44 1 2.2689 -4.1856 6.0294 45 1 0.7509 -0.7252 7.8170 46 1 -0.2965 -2.1899 7.5746 47 1 1.0470 -4.3436 8.4885 48 1 2.6577 -3.7831 9.1132 49 1 1.0364 -4.9407 2.1430 50 1 0.6481 -6.0913 0.0078 51 1 1.0333 -4.9197 -2.1202 52 1 1.8086 -2.5884 -2.1310 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_12335856.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:38 Heat of formation + Delta-G solvation = -5.710603 kcal Electronic energy + Delta-G solvation = -34712.784806 eV Core-core repulsion = 30174.173580 eV Total energy + Delta-G solvation = -4538.611226 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.71121 -42.98302 -41.08486 -39.68487 -39.20944 -37.64442 -36.26132 -34.34907 -33.74421 -33.08128 -31.31125 -30.52934 -30.23611 -27.36889 -26.90708 -26.34911 -24.82152 -24.63143 -23.53624 -22.87166 -21.85809 -21.11559 -20.48231 -20.08651 -18.95480 -18.29616 -17.90728 -17.50071 -17.24392 -16.87626 -16.71307 -16.40178 -16.28372 -16.03101 -15.92710 -15.64001 -15.54041 -15.26193 -15.10486 -14.89791 -14.71212 -14.50874 -14.34031 -14.24110 -13.87775 -13.83524 -13.74915 -13.57192 -13.47153 -13.28513 -13.21225 -13.14266 -13.00135 -12.68915 -12.61293 -12.44063 -12.39668 -12.02105 -11.97117 -11.85786 -11.28860 -11.20817 -10.94863 -10.39944 -10.23705 -10.15495 -10.05838 -9.70224 -8.83292 -5.00282 -0.47607 -0.00830 1.07674 1.36091 1.60095 1.69714 1.76819 1.80192 1.96284 2.07509 2.55636 3.23848 3.30356 3.47729 3.54796 3.57626 3.64931 3.67481 3.74639 3.82439 3.91968 3.93318 4.04869 4.11291 4.14964 4.15843 4.17415 4.19544 4.26288 4.37607 4.38088 4.48442 4.49821 4.53269 4.54199 4.62152 4.64298 4.68468 4.69983 4.77404 4.81317 4.87170 4.88353 4.97394 5.00524 5.05976 5.06449 5.12427 5.14987 5.24181 5.26399 5.28620 5.44618 5.59398 5.92022 6.09127 6.37074 6.51344 7.00933 7.07629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.037 3.963 3 C -0.227 4.227 4 C -0.183 4.183 5 C -0.037 4.037 6 O -0.563 6.563 7 Si 0.790 3.210 8 C 0.060 3.940 9 C -0.071 4.071 10 N -0.390 5.390 11 C 0.139 3.861 12 C -0.144 4.144 13 C 0.541 3.459 14 O -0.554 6.554 15 N -0.711 5.711 16 C 0.125 3.875 17 C -0.105 4.105 18 C -0.110 4.110 19 H 0.078 0.922 20 C -0.158 4.158 21 C 0.044 3.956 22 H 0.114 0.886 23 F -0.222 7.222 24 C -0.145 4.145 25 C -0.072 4.072 26 C -0.103 4.103 27 C -0.075 4.075 28 C -0.123 4.123 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.397 0.603 35 H -0.299 1.299 36 H -0.311 1.311 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.415 0.585 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.120 0.880 47 H 0.125 0.875 48 H 0.075 0.925 49 H 0.166 0.834 50 H 0.174 0.826 51 H 0.165 0.835 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -10.339 0.216 10.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 C -0.251 4.251 4 C -0.188 4.188 5 C -0.147 4.147 6 O -0.372 6.372 7 Si 0.698 3.302 8 C -0.050 4.050 9 C -0.128 4.128 10 N -0.064 5.064 11 C 0.049 3.951 12 C -0.148 4.148 13 C 0.328 3.672 14 O -0.432 6.432 15 N -0.365 5.365 16 C 0.001 3.999 17 C -0.143 4.143 18 C -0.129 4.129 19 H 0.097 0.903 20 C -0.196 4.196 21 C 0.008 3.992 22 H 0.132 0.868 23 F -0.203 7.203 24 C -0.183 4.183 25 C -0.091 4.091 26 C -0.120 4.120 27 C -0.093 4.093 28 C -0.142 4.142 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.091 0.909 34 H 0.247 0.753 35 H -0.227 1.227 36 H -0.239 1.239 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.253 0.747 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.139 0.861 47 H 0.144 0.856 48 H 0.094 0.906 49 H 0.184 0.816 50 H 0.192 0.808 51 H 0.183 0.817 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.955 -9.665 0.372 10.113 hybrid contribution -0.218 -0.003 0.280 0.355 sum -3.172 -9.668 0.652 10.196 Atomic orbital electron populations 1.20284 0.86863 1.03826 1.02395 1.20433 0.94076 0.84922 1.07829 1.20466 0.93397 0.97084 1.14114 1.18802 0.93650 0.92654 1.13743 1.24039 0.93968 1.08469 0.88227 1.86472 1.47064 1.74252 1.29438 0.95274 0.84436 0.76018 0.74512 1.20349 0.84638 0.93750 1.06268 1.20224 0.92863 0.96853 1.02850 1.41014 1.05194 1.03125 1.57033 1.17863 1.00430 0.83095 0.93739 1.20224 1.06293 0.96607 0.91667 1.18505 0.77893 0.86105 0.84726 1.90925 1.46112 1.18264 1.87887 1.45765 1.68488 1.17431 1.04794 1.21305 1.00314 0.95970 0.82293 1.21684 1.04007 0.97804 0.90759 1.22468 0.98506 0.97645 0.94281 0.90320 1.23730 1.00258 1.01085 0.94524 1.22737 0.92047 0.91005 0.93366 0.86801 1.92777 1.71531 1.73797 1.82200 1.23604 1.02484 0.97108 0.95097 1.21658 0.95200 0.91022 1.01177 1.21731 0.97404 1.02015 0.90864 1.21703 0.94390 0.92373 1.00852 1.21455 1.00094 0.96383 0.96287 0.91717 0.89361 0.90885 0.86192 0.90939 0.75277 1.22744 1.23937 0.90221 0.89845 0.92452 0.74651 0.93332 0.93096 0.88765 0.89282 0.91822 0.86138 0.85629 0.90648 0.81626 0.80823 0.81705 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.09 71.24 0.72 0.08 16 2 C 0.04 0.55 6.02 41.02 0.25 0.79 16 3 C -0.23 -4.10 9.27 22.16 0.21 -3.89 16 4 C -0.18 -3.00 5.39 -19.98 -0.11 -3.11 16 5 C -0.04 -0.36 2.59 71.24 0.18 -0.17 16 6 O -0.56 -4.20 12.86 -148.98 -1.92 -6.11 16 7 Si 0.79 6.17 30.84 68.60 2.12 8.29 16 8 C 0.06 0.87 5.96 41.02 0.24 1.11 16 9 C -0.07 -0.60 9.88 71.23 0.70 0.11 16 10 N -0.39 -4.94 1.45 -319.54 -0.46 -5.41 16 11 C 0.14 0.89 4.52 38.49 0.17 1.06 16 12 C -0.14 -0.41 5.89 -19.99 -0.12 -0.53 16 13 C 0.54 3.78 7.77 86.71 0.67 4.46 16 14 O -0.55 -9.34 13.68 -4.01 -0.05 -9.39 16 15 N -0.71 0.79 5.51 -466.22 -2.57 -1.78 16 16 C 0.12 0.00 5.66 86.38 0.49 0.49 16 17 C -0.11 0.75 5.17 30.59 0.16 0.91 16 18 C -0.11 0.39 3.63 -10.27 -0.04 0.35 16 19 H 0.08 0.04 8.13 -2.38 -0.02 0.02 16 20 C -0.16 0.48 7.53 31.12 0.23 0.71 16 21 C 0.04 -0.07 5.69 31.12 0.18 0.11 16 22 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 23 F -0.22 -1.54 17.38 44.97 0.78 -0.76 16 24 C -0.15 0.77 7.54 31.12 0.23 1.01 16 25 C -0.07 0.44 9.54 22.52 0.21 0.66 16 26 C -0.10 0.90 10.02 22.24 0.22 1.12 16 27 C -0.07 0.44 10.03 22.30 0.22 0.67 16 28 C -0.12 -0.15 9.96 22.36 0.22 0.08 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.39 7.84 -2.39 -0.02 0.37 16 32 H 0.12 2.18 6.55 -2.91 -0.02 2.16 16 33 H 0.07 0.49 7.50 -2.38 -0.02 0.47 16 34 H 0.40 -1.60 8.74 -74.06 -0.65 -2.25 16 35 H -0.30 -4.39 7.06 99.48 0.70 -3.69 16 36 H -0.31 -4.95 7.11 99.48 0.71 -4.24 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.59 7.50 -2.38 -0.02 0.57 16 39 H 0.06 0.44 7.83 -2.39 -0.02 0.42 16 40 H 0.42 -3.69 6.50 -92.71 -0.60 -4.29 16 41 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.09 -1.00 7.84 -2.39 -0.02 -1.02 16 44 H 0.09 -0.83 8.14 -2.38 -0.02 -0.85 16 45 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.12 -0.88 7.89 -2.39 -0.02 -0.90 16 47 H 0.13 -1.30 8.10 -2.39 -0.02 -1.32 16 48 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 49 H 0.17 -2.22 6.40 -2.91 -0.02 -2.24 16 50 H 0.17 -2.69 8.06 -2.91 -0.02 -2.71 16 51 H 0.17 -1.86 8.06 -2.91 -0.02 -1.88 16 52 H 0.13 0.24 8.06 -2.91 -0.02 0.21 16 Total: 0.00 -31.92 426.28 2.69 -29.23 By element: Atomic # 1 Polarization: -19.82 SS G_CDS: -0.27 Total: -20.10 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 5.07 Total: 6.02 kcal Atomic # 7 Polarization: -4.15 SS G_CDS: -3.03 Total: -7.18 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.97 Total: -15.50 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.78 Total: -0.76 kcal Atomic # 14 Polarization: 6.17 SS G_CDS: 2.12 Total: 8.29 kcal Total: -31.92 2.69 -29.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_12335856.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.521 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds