Wall clock time and date at job start Sun Mar 7 2021 02:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46790 * 2 1 4 4 C 1.53004 * 109.47020 * 189.34390 * 3 2 1 5 5 C 1.52997 * 109.47096 * 69.34324 * 3 2 1 6 6 C 1.50695 * 109.47162 * 186.93668 * 5 3 2 7 7 O 1.21283 * 119.99996 * 246.75331 * 6 5 3 8 8 N 1.34777 * 120.00232 * 66.75397 * 6 5 3 9 9 C 1.46496 * 120.00294 * 174.98535 * 8 6 5 10 10 C 1.52998 * 109.47113 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47237 * 180.02562 * 10 9 8 12 12 H 1.09003 * 112.90572 * 316.25201 * 11 10 9 13 13 C 1.53947 * 113.67120 * 87.54895 * 11 10 9 14 14 C 1.53779 * 87.11199 * 139.89232 * 13 11 10 15 15 H 1.09005 * 113.69069 * 220.07619 * 14 13 11 16 16 F 1.39898 * 113.61371 * 89.19024 * 14 13 11 17 17 C 1.53778 * 113.61513 * 185.00419 * 11 10 9 18 18 N 1.46507 * 109.47034 * 66.93692 * 5 3 2 19 19 C 1.36342 * 125.63257 * 57.10060 * 18 5 3 20 20 C 1.34852 * 108.21585 * 179.82938 * 19 18 5 21 21 C 1.40900 * 107.41517 * 0.42332 * 20 19 18 22 22 C 1.34851 * 107.41544 * 359.73822 * 21 20 19 23 23 C 1.50696 * 125.88716 * 180.02562 * 22 21 20 24 24 O 1.42899 * 109.47252 * 221.92954 * 23 22 21 25 25 Si 1.86305 * 109.47252 * 341.93057 * 23 22 21 26 26 H 1.09002 * 109.47214 * 311.16967 * 1 2 3 27 27 H 1.09004 * 109.46789 * 71.17296 * 1 2 3 28 28 H 1.09006 * 109.46911 * 191.16685 * 1 2 3 29 29 H 1.09001 * 109.46773 * 240.00577 * 2 1 3 30 30 H 1.08996 * 109.47169 * 119.99834 * 2 1 3 31 31 H 1.09004 * 109.47432 * 309.34258 * 3 2 1 32 32 H 1.09001 * 109.46694 * 312.08074 * 4 3 2 33 33 H 1.09000 * 109.46843 * 72.08415 * 4 3 2 34 34 H 1.08995 * 109.46973 * 192.08047 * 4 3 2 35 35 H 1.09000 * 109.47400 * 306.93701 * 5 3 2 36 36 H 0.97003 * 119.99894 * 354.98773 * 8 6 5 37 37 H 1.09008 * 109.47305 * 60.00072 * 9 8 6 38 38 H 1.09003 * 109.47452 * 300.00143 * 9 8 6 39 39 H 1.08997 * 109.46992 * 60.00464 * 10 9 8 40 40 H 1.09000 * 109.47201 * 299.99675 * 10 9 8 41 41 H 1.09007 * 113.53537 * 25.34224 * 13 11 10 42 42 H 1.09001 * 113.74743 * 254.47563 * 13 11 10 43 43 H 1.09004 * 113.61794 * 105.46909 * 17 11 10 44 44 H 1.08994 * 113.61364 * 334.64579 * 17 11 10 45 45 H 1.07995 * 125.89446 * 0.02562 * 19 18 5 46 46 H 1.07997 * 126.29280 * 180.15693 * 20 19 18 47 47 H 1.07996 * 126.28876 * 179.72861 * 21 20 19 48 48 H 1.09001 * 109.47292 * 101.93056 * 23 22 21 49 49 H 0.96703 * 114.00281 * 179.97438 * 24 23 22 50 50 H 1.48502 * 109.99941 * 178.68230 * 25 23 22 51 51 H 1.48493 * 109.99675 * 299.99804 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5520 1.4490 -0.2342 5 6 1.7302 2.0930 1.3497 6 6 2.0766 3.5584 1.2925 7 8 2.9880 3.9928 1.9645 8 7 1.3737 4.3864 0.4945 9 6 1.6370 5.8273 0.5204 10 6 0.7106 6.5329 -0.4720 11 6 0.9860 8.0377 -0.4455 12 1 1.0986 8.4306 0.5650 13 6 2.1049 8.4783 -1.4066 14 6 1.2365 9.7052 -1.7311 15 1 1.2416 9.9787 -2.7863 16 9 1.4691 10.7957 -0.8862 17 6 0.0220 8.8559 -1.3206 18 7 2.5225 1.4444 2.3976 19 6 3.8818 1.3410 2.4164 20 6 4.2392 0.6843 3.5387 21 6 3.0566 0.3623 4.2336 22 6 2.0219 0.8396 3.5123 23 6 0.5640 0.7247 3.8759 24 8 -0.1940 0.4008 2.7087 25 14 0.3456 -0.6166 5.1503 26 1 -0.3634 0.6765 0.7736 27 1 -0.3633 0.3317 -0.9727 28 1 -0.3633 -1.0083 0.1990 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.5468 2.0023 -0.7948 32 1 4.0249 0.7215 0.4255 33 1 3.7600 1.1877 -1.2718 34 1 3.9481 2.4422 -0.0232 35 1 0.6695 1.9788 1.5732 36 1 0.6934 4.0283 -0.0970 37 1 2.6747 6.0121 0.2427 38 1 1.4554 6.2119 1.5240 39 1 -0.3272 6.3482 -0.1948 40 1 0.8927 6.1483 -1.4756 41 1 2.2425 7.8047 -2.2525 42 1 3.0411 8.7260 -0.9063 43 1 -0.7242 9.4084 -0.7495 44 1 -0.4108 8.2867 -2.1432 45 1 4.5563 1.7222 1.6639 46 1 5.2465 0.4451 3.8460 47 1 2.9908 -0.1692 5.1714 48 1 0.2154 1.6735 4.2837 49 1 -1.1434 0.3106 2.8687 50 1 -1.0835 -0.7184 5.5408 51 1 0.8172 -1.9154 4.6064 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_12360566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:52 Heat of formation + Delta-G solvation = -35.955715 kcal Electronic energy + Delta-G solvation = -31357.154882 eV Core-core repulsion = 27174.599072 eV Total energy + Delta-G solvation = -4182.555810 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.68893 -42.83452 -40.70419 -39.38665 -37.85763 -37.66403 -36.20692 -33.07115 -31.92017 -31.58738 -30.66733 -28.36449 -26.84824 -25.98894 -25.62964 -24.60447 -22.91398 -22.20836 -21.70508 -21.44899 -20.45958 -19.95538 -18.86255 -18.38840 -17.73105 -17.24278 -17.00155 -16.88068 -16.56451 -16.33789 -16.02613 -15.91948 -15.54096 -15.45706 -15.14317 -14.83125 -14.56966 -14.44160 -14.37791 -14.12358 -13.85931 -13.81092 -13.49139 -13.48784 -13.30513 -13.14862 -13.07757 -12.83485 -12.65153 -12.57307 -12.20208 -12.01220 -11.97736 -11.84792 -11.82219 -11.75510 -11.50935 -11.24276 -11.15973 -10.92110 -10.59106 -10.24842 -9.49831 -8.85218 -4.82513 1.10236 1.31131 1.38206 1.64471 1.85083 2.03127 2.11076 2.27510 3.18355 3.26732 3.32500 3.38955 3.55278 3.58949 3.70216 3.72306 3.77184 3.84899 3.94641 4.09576 4.18900 4.22893 4.29750 4.35575 4.41203 4.44447 4.47257 4.56873 4.61442 4.68049 4.69658 4.71694 4.72781 4.76657 4.80868 4.87985 4.91055 5.00112 5.00850 5.09269 5.15009 5.16155 5.21428 5.29835 5.34857 5.35722 5.41397 5.47720 5.58000 6.08599 6.26814 6.31883 6.48725 6.59015 7.03836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.085 4.085 4 C -0.166 4.166 5 C 0.120 3.880 6 C 0.500 3.500 7 O -0.564 6.564 8 N -0.711 5.711 9 C 0.122 3.878 10 C -0.106 4.106 11 C -0.109 4.109 12 H 0.080 0.920 13 C -0.157 4.157 14 C 0.043 3.957 15 H 0.113 0.887 16 F -0.222 7.222 17 C -0.147 4.147 18 N -0.412 5.412 19 C 0.000 4.000 20 C -0.225 4.225 21 C -0.205 4.205 22 C 0.015 3.985 23 C -0.054 4.054 24 O -0.541 6.541 25 Si 0.776 3.224 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.151 0.849 36 H 0.417 0.583 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.124 0.876 45 H 0.165 0.835 46 H 0.143 0.857 47 H 0.158 0.842 48 H 0.085 0.915 49 H 0.396 0.604 50 H -0.277 1.277 51 H -0.304 1.304 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 -0.603 -4.483 7.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.104 4.104 4 C -0.223 4.223 5 C 0.014 3.986 6 C 0.285 3.715 7 O -0.442 6.442 8 N -0.364 5.364 9 C -0.002 4.002 10 C -0.144 4.144 11 C -0.128 4.128 12 H 0.099 0.901 13 C -0.195 4.195 14 C 0.007 3.993 15 H 0.130 0.870 16 F -0.203 7.203 17 C -0.185 4.185 18 N -0.088 5.088 19 C -0.130 4.130 20 C -0.249 4.249 21 C -0.230 4.230 22 C -0.096 4.096 23 C -0.163 4.163 24 O -0.352 6.352 25 Si 0.680 3.320 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.168 0.832 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.142 0.858 45 H 0.182 0.818 46 H 0.160 0.840 47 H 0.175 0.825 48 H 0.103 0.897 49 H 0.248 0.752 50 H -0.204 1.204 51 H -0.231 1.231 Dipole moment (debyes) X Y Z Total from point charges -5.636 -0.798 -4.309 7.139 hybrid contribution -0.561 0.264 -0.669 0.912 sum -6.197 -0.535 -4.977 7.966 Atomic orbital electron populations 1.21897 0.94160 1.02366 1.02223 1.21424 0.97445 0.94319 1.01416 1.21478 0.97399 0.97977 0.93558 1.22350 0.95355 1.01469 1.03144 1.21707 0.99105 0.88130 0.89680 1.21050 0.81931 0.89033 0.79436 1.90775 1.30833 1.78085 1.44498 1.45818 1.40454 1.07505 1.42650 1.21360 1.00005 0.78876 0.99949 1.21686 0.99831 0.93036 0.99817 1.22491 0.96502 0.95082 0.98721 0.90148 1.23754 0.97792 0.96860 1.01089 1.22741 0.99326 0.83364 0.93854 0.86957 1.92775 1.95536 1.57559 1.74443 1.23606 0.96041 0.97659 1.01158 1.43513 1.05521 1.42412 1.17326 1.22144 0.84031 1.05366 1.01448 1.21075 0.99149 1.07764 0.96901 1.20818 0.91658 1.08110 1.02381 1.20055 0.94175 1.04795 0.90564 1.24484 0.87273 1.08767 0.95778 1.86598 1.24611 1.92746 1.31264 0.93341 0.80434 0.74637 0.83574 0.90095 0.92075 0.93678 0.91552 0.93832 0.87000 0.91633 0.90718 0.93559 0.83151 0.74508 0.92616 0.93058 0.89380 0.88825 0.86172 0.91566 0.90755 0.85780 0.81812 0.83968 0.82467 0.89679 0.75246 1.20355 1.23118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.59 9.02 71.98 0.65 1.24 16 2 C -0.11 0.09 5.33 30.60 0.16 0.25 16 3 C -0.09 0.20 2.15 -10.79 -0.02 0.18 16 4 C -0.17 -0.07 7.39 71.98 0.53 0.46 16 5 C 0.12 0.09 2.27 44.24 0.10 0.19 16 6 C 0.50 1.84 6.00 87.66 0.53 2.36 16 7 O -0.56 -7.60 15.46 -3.04 -0.05 -7.65 16 8 N -0.71 2.63 5.48 -463.06 -2.54 0.09 16 9 C 0.12 -0.31 5.67 86.38 0.49 0.18 16 10 C -0.11 0.92 5.17 30.59 0.16 1.08 16 11 C -0.11 0.55 3.64 -10.21 -0.04 0.51 16 12 H 0.08 -0.10 8.13 -2.39 -0.02 -0.12 16 13 C -0.16 0.70 7.53 31.18 0.23 0.93 16 14 C 0.04 -0.10 5.69 31.12 0.18 0.07 16 15 H 0.11 -0.67 8.14 -2.38 -0.02 -0.69 16 16 F -0.22 -1.34 17.38 44.97 0.78 -0.56 16 17 C -0.15 0.90 7.53 31.12 0.23 1.13 16 18 N -0.41 -2.52 1.82 -491.52 -0.89 -3.42 16 19 C 0.00 0.00 7.55 83.21 0.63 0.63 16 20 C -0.22 -2.00 10.86 22.14 0.24 -1.76 16 21 C -0.21 -1.40 9.39 22.14 0.21 -1.19 16 22 C 0.01 0.09 6.26 41.08 0.26 0.34 16 23 C -0.05 0.05 2.75 71.23 0.20 0.24 16 24 O -0.54 2.03 7.39 -148.98 -1.10 0.93 16 25 Si 0.78 -1.04 30.79 68.60 2.11 1.08 16 26 H 0.08 -0.45 3.91 -2.39 -0.01 -0.46 16 27 H 0.06 -0.39 8.14 -2.38 -0.02 -0.41 16 28 H 0.04 -0.07 8.14 -2.38 -0.02 -0.09 16 29 H 0.07 -0.07 8.12 -2.39 -0.02 -0.09 16 30 H 0.04 0.23 7.59 -2.39 -0.02 0.21 16 31 H 0.11 -0.84 7.71 -2.39 -0.02 -0.86 16 32 H 0.06 0.23 5.38 -2.39 -0.01 0.21 16 33 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.05 0.15 6.53 -2.39 -0.02 0.14 16 35 H 0.15 -0.33 4.37 -2.39 -0.01 -0.34 16 36 H 0.42 -4.41 8.13 -92.71 -0.75 -5.16 16 37 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 38 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.09 -1.11 7.84 -2.39 -0.02 -1.13 16 41 H 0.12 -1.04 7.90 -2.38 -0.02 -1.05 16 42 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.12 -1.34 8.10 -2.39 -0.02 -1.36 16 45 H 0.16 1.30 5.40 -2.91 -0.02 1.29 16 46 H 0.14 0.89 8.06 -2.91 -0.02 0.86 16 47 H 0.16 0.30 6.48 -2.91 -0.02 0.28 16 48 H 0.09 -0.29 7.96 -2.39 -0.02 -0.31 16 49 H 0.40 -4.57 8.74 -74.06 -0.65 -5.22 16 50 H -0.28 -0.29 7.11 99.48 0.71 0.41 16 51 H -0.30 -2.25 7.11 99.48 0.71 -1.55 16 Total: 0.00 -22.16 390.38 2.63 -19.53 By element: Atomic # 1 Polarization: -16.45 SS G_CDS: -0.42 Total: -16.87 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 4.74 Total: 6.87 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -3.43 Total: -3.33 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -1.15 Total: -6.72 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.78 Total: -0.56 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: 2.11 Total: 1.08 kcal Total: -22.16 2.63 -19.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_12360566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.425 kcal (2) G-P(sol) polarization free energy of solvation -22.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds