Wall clock time and date at job start Sun Mar 7 2021 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.46821 * 2 1 4 4 C 1.50700 * 109.47185 * 119.99995 * 2 1 3 5 5 C 1.38403 * 119.82534 * 65.00304 * 4 2 1 6 6 C 1.37893 * 120.16807 * 180.27866 * 5 4 2 7 7 C 1.39836 * 119.82402 * 359.46824 * 6 5 4 8 8 C 1.47206 * 120.16774 * 180.23013 * 7 6 5 9 9 C 1.34814 * 119.99785 * 0.32289 * 8 7 6 10 10 C 1.46436 * 119.99827 * 179.97438 * 9 8 7 11 11 O 1.21696 * 119.99873 * 0.02562 * 10 9 8 12 12 N 1.34770 * 119.99692 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99826 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47428 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47738 * 179.97438 * 14 13 12 16 16 H 1.09010 * 112.84377 * 45.33118 * 15 14 13 17 17 C 1.53774 * 113.61891 * 176.52615 * 15 14 13 18 18 C 1.53780 * 87.07976 * 139.98318 * 17 15 14 19 19 H 1.09008 * 113.61704 * 220.01975 * 18 17 15 20 20 F 1.39902 * 113.61356 * 89.20140 * 18 17 15 21 21 C 1.53775 * 113.61510 * 274.14169 * 15 14 13 22 22 C 1.39830 * 119.66390 * 0.55003 * 7 6 5 23 23 C 1.37896 * 119.82728 * 359.70702 * 22 7 6 24 24 H 0.96703 * 114.00295 * 59.99826 * 1 2 3 25 25 H 1.08998 * 109.47323 * 240.00546 * 2 1 3 26 26 H 1.48495 * 110.00428 * 298.67870 * 3 2 1 27 27 H 1.48503 * 109.99819 * 60.00294 * 3 2 1 28 28 H 1.08002 * 119.91248 * 359.97438 * 5 4 2 29 29 H 1.08004 * 120.08196 * 179.70429 * 6 5 4 30 30 H 1.07996 * 120.00125 * 180.31365 * 8 7 6 31 31 H 1.07995 * 120.00095 * 359.97438 * 9 8 7 32 32 H 0.96995 * 120.00241 * 0.02562 * 12 10 9 33 33 H 1.09003 * 109.47104 * 300.00260 * 13 12 10 34 34 H 1.09000 * 109.46832 * 60.00201 * 13 12 10 35 35 H 1.09003 * 109.46910 * 300.00036 * 14 13 12 36 36 H 1.09000 * 109.47229 * 60.00102 * 14 13 12 37 37 H 1.09001 * 113.61590 * 254.53268 * 17 15 14 38 38 H 1.09002 * 113.61494 * 25.35430 * 17 15 14 39 39 H 1.08998 * 113.61730 * 334.56090 * 21 15 14 40 40 H 1.09003 * 113.61746 * 105.46557 * 21 15 14 41 41 H 1.08002 * 120.09119 * 179.68462 * 22 7 6 42 42 H 1.08001 * 119.91696 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6825 -2.0619 1.3949 6 6 2.1339 -2.7177 2.5207 7 6 2.8544 -2.0161 3.4923 8 6 3.3442 -2.7098 4.6947 9 6 3.1041 -4.0263 4.8582 10 6 3.5918 -4.7165 6.0540 11 8 4.2135 -4.1017 6.9005 12 7 3.3514 -6.0325 6.2176 13 6 3.8388 -6.7229 7.4143 14 6 3.4349 -8.1973 7.3526 15 6 3.9445 -8.9186 8.6020 16 1 3.7557 -8.3607 9.5193 17 6 3.5171 -10.3937 8.6792 18 6 4.9283 -10.6929 9.2121 19 1 5.3595 -11.6118 8.8146 20 9 5.0325 -10.6019 10.6043 21 6 5.3914 -9.4233 8.4748 22 6 3.1014 -0.6507 3.3192 23 6 2.6388 -0.0078 2.1904 24 1 -0.3934 0.4417 -0.7650 25 1 1.7924 -0.5137 -0.8900 26 1 1.5879 2.4587 -1.2242 27 1 1.5614 2.4679 1.2086 28 1 1.1290 -2.6031 0.6417 29 1 1.9347 -3.7714 2.6499 30 1 3.8960 -2.1642 5.4458 31 1 2.5521 -4.5719 4.1072 32 1 2.8556 -6.5225 5.5432 33 1 4.9251 -6.6459 7.4611 34 1 3.4034 -6.2633 8.3016 35 1 2.3486 -8.2747 7.3057 36 1 3.8706 -8.6566 6.4654 37 1 2.7269 -10.5820 9.4059 38 1 3.3126 -10.8405 7.7062 39 1 5.7018 -9.6047 7.4458 40 1 6.1122 -8.8293 9.0368 41 1 3.6527 -0.1010 4.0677 42 1 2.8291 1.0467 2.0550 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_12360594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:56 Heat of formation + Delta-G solvation = -53.729883 kcal Electronic energy + Delta-G solvation = -22991.581192 eV Core-core repulsion = 19239.378743 eV Total energy + Delta-G solvation = -3752.202449 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.67169 -40.93510 -40.41696 -39.35817 -37.87879 -36.15195 -35.18010 -32.24291 -32.03426 -31.11960 -27.43575 -26.82244 -25.87398 -24.03309 -23.67597 -22.76197 -21.91416 -20.59733 -20.31337 -18.65119 -18.48721 -17.59546 -17.32325 -16.97514 -16.74507 -16.56962 -16.39712 -16.23398 -15.92062 -15.44919 -15.28053 -15.18669 -14.73103 -14.52910 -14.33992 -14.09241 -13.87883 -13.78885 -13.48460 -13.38665 -13.19200 -13.09470 -12.52719 -12.26993 -12.04492 -11.96218 -11.81287 -11.75860 -11.32441 -11.26169 -11.17013 -10.90331 -10.50163 -10.17506 -9.97430 -9.23895 -4.94252 -0.55238 0.40074 0.88071 1.28384 1.57831 1.92835 2.18153 2.22447 2.77825 3.28371 3.35171 3.37670 3.57062 3.61370 3.72523 3.74044 3.85207 3.88350 3.96020 4.09315 4.16630 4.20472 4.26719 4.33214 4.43281 4.44989 4.53591 4.59717 4.73364 4.74765 4.82805 4.88093 4.92781 4.95491 5.02827 5.09642 5.12774 5.15782 5.19603 5.37834 5.42981 5.48268 5.49704 5.60345 5.90032 6.53306 6.56560 7.20511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.758 3.242 4 C -0.075 4.075 5 C -0.105 4.105 6 C -0.100 4.100 7 C -0.083 4.083 8 C -0.019 4.019 9 C -0.210 4.210 10 C 0.539 3.461 11 O -0.596 6.596 12 N -0.712 5.712 13 C 0.118 3.882 14 C -0.106 4.106 15 C -0.110 4.110 16 H 0.080 0.920 17 C -0.148 4.148 18 C 0.044 3.956 19 H 0.113 0.887 20 F -0.222 7.222 21 C -0.157 4.157 22 C -0.097 4.097 23 C -0.128 4.128 24 H 0.395 0.605 25 H 0.100 0.900 26 H -0.286 1.286 27 H -0.301 1.301 28 H 0.138 0.862 29 H 0.153 0.847 30 H 0.125 0.875 31 H 0.162 0.838 32 H 0.419 0.581 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.146 0.854 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 -3.633 -7.629 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.194 4.194 3 Si 0.664 3.336 4 C -0.075 4.075 5 C -0.123 4.123 6 C -0.118 4.118 7 C -0.083 4.083 8 C -0.039 4.039 9 C -0.230 4.230 10 C 0.329 3.671 11 O -0.479 6.479 12 N -0.363 5.363 13 C -0.006 4.006 14 C -0.144 4.144 15 C -0.129 4.129 16 H 0.099 0.901 17 C -0.185 4.185 18 C 0.008 3.992 19 H 0.131 0.869 20 F -0.203 7.203 21 C -0.195 4.195 22 C -0.114 4.114 23 C -0.145 4.145 24 H 0.246 0.754 25 H 0.118 0.882 26 H -0.213 1.213 27 H -0.229 1.229 28 H 0.156 0.844 29 H 0.170 0.830 30 H 0.143 0.857 31 H 0.180 0.820 32 H 0.257 0.743 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.085 0.915 41 H 0.163 0.837 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.046 -2.733 -6.447 7.002 hybrid contribution -1.293 -0.029 -0.215 1.311 sum -1.339 -2.762 -6.661 7.335 Atomic orbital electron populations 1.86544 1.18426 1.80658 1.51151 1.24986 0.84107 1.11550 0.98750 0.94152 0.90516 0.72647 0.76278 1.19683 0.97790 0.94609 0.95441 1.21151 0.98951 0.93899 0.98280 1.21697 0.96128 1.01149 0.92807 1.19122 1.00247 0.94090 0.94812 1.22380 0.92923 0.94436 0.94188 1.23001 1.05727 0.95954 0.98344 1.18787 0.79023 0.82533 0.86765 1.90817 1.43351 1.67345 1.46346 1.45790 1.57335 1.08881 1.24334 1.21352 0.99063 0.93015 0.87125 1.21681 1.02591 0.91818 0.98302 1.22478 0.95944 0.95780 0.98748 0.90149 1.23609 0.95589 0.95701 1.03638 1.22778 1.00173 1.01270 0.75009 0.86873 1.92775 1.97101 1.97673 1.32749 1.23751 0.97233 0.95867 1.02619 1.21567 0.98605 0.93651 0.97626 1.21130 0.99199 1.00232 0.93977 0.75403 0.88249 1.21336 1.22907 0.84423 0.82982 0.85732 0.82032 0.74337 0.92551 0.93160 0.89610 0.88835 0.90786 0.85786 0.86130 0.91455 0.83669 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.65 12.81 -148.98 -1.91 -2.56 16 2 C -0.08 0.14 2.79 71.24 0.20 0.34 16 3 Si 0.76 -1.73 29.84 68.60 2.05 0.32 16 4 C -0.08 -0.08 5.39 -19.79 -0.11 -0.19 16 5 C -0.10 0.00 9.66 22.23 0.21 0.21 16 6 C -0.10 0.12 9.41 22.57 0.21 0.34 16 7 C -0.08 -0.07 5.87 -20.15 -0.12 -0.19 16 8 C -0.02 -0.04 9.46 23.84 0.23 0.19 16 9 C -0.21 0.08 9.41 23.62 0.22 0.30 16 10 C 0.54 2.71 7.74 86.38 0.67 3.38 16 11 O -0.60 -8.91 16.23 -4.34 -0.07 -8.98 16 12 N -0.71 1.26 5.55 -467.34 -2.59 -1.33 16 13 C 0.12 -0.08 5.67 86.38 0.49 0.41 16 14 C -0.11 0.75 5.15 30.59 0.16 0.90 16 15 C -0.11 0.41 3.62 -10.27 -0.04 0.38 16 16 H 0.08 -0.01 8.14 -2.38 -0.02 -0.02 16 17 C -0.15 0.75 7.54 31.12 0.23 0.98 16 18 C 0.04 -0.07 5.69 31.18 0.18 0.11 16 19 H 0.11 -0.61 8.14 -2.38 -0.02 -0.63 16 20 F -0.22 -1.47 17.38 44.97 0.78 -0.69 16 21 C -0.16 0.56 7.54 31.18 0.24 0.79 16 22 C -0.10 -0.07 9.80 22.57 0.22 0.16 16 23 C -0.13 -0.08 8.65 22.23 0.19 0.11 16 24 H 0.40 -2.66 8.74 -74.06 -0.65 -3.31 16 25 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 26 H -0.29 -0.52 7.11 99.48 0.71 0.18 16 27 H -0.30 -1.62 7.04 99.48 0.70 -0.92 16 28 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 29 H 0.15 -1.03 6.17 -2.91 -0.02 -1.05 16 30 H 0.12 0.52 7.52 -2.91 -0.02 0.50 16 31 H 0.16 -1.23 6.07 -2.91 -0.02 -1.25 16 32 H 0.42 -3.82 8.45 -92.71 -0.78 -4.60 16 33 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 36 H 0.09 -0.97 7.87 -2.39 -0.02 -0.99 16 37 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.12 -1.21 8.10 -2.39 -0.02 -1.23 16 39 H 0.12 -0.94 7.92 -2.39 -0.02 -0.96 16 40 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.15 -0.38 8.06 -2.91 -0.02 -0.40 16 42 H 0.14 -0.31 4.84 -2.91 -0.01 -0.32 16 Total: 0.00 -22.89 356.10 1.09 -21.80 By element: Atomic # 1 Polarization: -16.41 SS G_CDS: -0.35 Total: -16.76 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 3.19 Total: 8.22 kcal Atomic # 7 Polarization: 1.26 SS G_CDS: -2.59 Total: -1.33 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.98 Total: -11.54 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.78 Total: -0.69 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: 2.05 Total: 0.32 kcal Total: -22.89 1.09 -21.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_12360594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.929 kcal (2) G-P(sol) polarization free energy of solvation -22.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds