Wall clock time and date at job start Sun Mar 7 2021 02:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35657 * 116.99877 * 2 1 4 4 C 1.40133 * 120.15338 * 180.29821 * 3 2 1 5 5 C 1.47543 * 120.18907 * 359.97438 * 4 3 2 6 6 O 1.21585 * 119.99977 * 0.30211 * 5 4 3 7 7 N 1.34774 * 119.99906 * 180.29141 * 5 4 3 8 8 C 1.46500 * 120.00193 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47542 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47243 * 179.97438 * 9 8 7 11 11 H 1.08994 * 112.84816 * 43.80579 * 10 9 8 12 12 C 1.53783 * 113.61175 * 174.99632 * 10 9 8 13 13 C 1.53782 * 87.08051 * 139.97974 * 12 10 9 14 14 H 1.08998 * 113.62124 * 220.01810 * 13 12 10 15 15 F 1.39902 * 113.60933 * 89.11406 * 13 12 10 16 16 C 1.53779 * 113.61559 * 272.49473 * 10 9 8 17 17 C 1.39702 * 119.62092 * 180.29666 * 4 3 2 18 18 C 1.37790 * 119.90785 * 359.70040 * 17 4 3 19 19 C 1.50695 * 119.85051 * 180.02562 * 18 17 4 20 20 O 1.42898 * 109.47413 * 299.97676 * 19 18 17 21 21 Si 1.86307 * 109.46839 * 179.97438 * 19 18 17 22 22 C 1.38554 * 120.29622 * 359.97438 * 18 17 4 23 23 C 1.38056 * 120.39136 * 0.03707 * 22 18 17 24 24 H 1.09002 * 109.47017 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47232 * 299.99299 * 1 2 3 26 26 H 1.08995 * 109.47465 * 60.00100 * 1 2 3 27 27 H 0.97002 * 120.00411 * 0.02562 * 7 5 4 28 28 H 1.09001 * 109.47030 * 300.00214 * 8 7 5 29 29 H 1.08996 * 109.47331 * 59.99964 * 8 7 5 30 30 H 1.09001 * 109.46847 * 299.99976 * 9 8 7 31 31 H 1.08996 * 109.47123 * 59.99486 * 9 8 7 32 32 H 1.08993 * 113.61661 * 254.52933 * 12 10 9 33 33 H 1.09000 * 113.61576 * 25.35039 * 12 10 9 34 34 H 1.08998 * 113.61187 * 334.56911 * 16 10 9 35 35 H 1.08995 * 113.61556 * 105.46701 * 16 10 9 36 36 H 1.08001 * 120.04898 * 179.68667 * 17 4 3 37 37 H 1.09001 * 109.47024 * 59.98670 * 19 18 17 38 38 H 0.96694 * 113.99987 * 300.00582 * 20 19 18 39 39 H 1.48499 * 109.99998 * 58.68510 * 21 19 18 40 40 H 1.48503 * 109.99717 * 180.02562 * 21 19 18 41 41 H 1.07999 * 119.80316 * 180.02562 * 22 18 17 42 42 H 1.08002 * 119.95450 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4440 1.2859 -0.0063 5 6 4.2550 0.0533 -0.0124 6 8 3.7095 -1.0333 -0.0175 7 7 5.6004 0.1319 -0.0125 8 6 6.4057 -1.0919 -0.0192 9 6 7.8911 -0.7251 -0.0172 10 6 8.7320 -2.0032 -0.0235 11 1 8.3591 -2.7517 -0.7225 12 6 10.2433 -1.7456 -0.1450 13 6 10.4385 -2.8747 0.8807 14 1 11.2169 -2.6679 1.6151 15 9 10.5589 -4.1427 0.3019 16 6 9.0193 -2.5586 1.3815 17 6 4.0666 2.5364 0.0000 18 6 3.3036 3.6838 0.0062 19 6 3.9766 5.0321 0.0125 20 8 4.7924 5.1519 1.1796 21 14 2.6823 6.3721 0.0191 22 6 1.9204 3.6033 0.0056 23 6 1.2923 2.3740 -0.0004 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 6.0357 0.9988 -0.0082 28 1 6.1765 -1.6824 0.8679 29 1 6.1759 -1.6732 -0.9120 30 1 8.1206 -0.1343 -0.9040 31 1 8.1206 -0.1439 0.8759 32 1 10.6477 -1.9762 -1.1305 33 1 10.5498 -0.7652 0.2195 34 1 8.9913 -1.8009 2.1645 35 1 8.4355 -3.4453 1.6282 36 1 5.1445 2.6039 0.0004 37 1 4.5983 5.1320 -0.8773 38 1 4.3042 5.0728 2.0105 39 1 1.8080 6.2279 1.2108 40 1 3.3332 7.7069 0.0247 41 1 1.3301 4.5077 0.0100 42 1 0.2137 2.3195 -0.0005 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_12496546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:04 Heat of formation + Delta-G solvation = -100.742420 kcal Electronic energy + Delta-G solvation = -25278.143323 eV Core-core repulsion = 21333.446206 eV Total energy + Delta-G solvation = -3944.697117 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.67858 -41.77208 -40.23223 -39.30880 -39.22292 -37.22669 -36.09885 -33.13024 -31.90088 -31.29583 -28.54117 -26.88246 -26.37328 -26.15744 -24.69489 -23.02640 -22.37954 -21.48065 -20.42932 -19.55146 -18.43759 -18.17257 -17.32190 -17.24555 -16.97789 -16.78964 -16.56973 -16.37894 -16.14966 -15.97904 -15.88747 -15.77494 -15.35787 -14.72764 -14.63156 -14.52033 -14.42445 -13.80246 -13.59201 -13.49413 -13.39750 -13.16983 -13.02752 -12.53781 -12.42983 -12.22833 -12.05307 -11.97154 -11.81365 -11.67712 -11.24062 -11.16200 -10.91193 -10.55231 -10.31765 -10.04765 -9.29496 -4.88453 -0.26835 0.21430 1.34509 1.63094 1.76502 2.00407 2.09254 2.26873 2.67530 3.27927 3.34262 3.41776 3.56325 3.60414 3.63671 3.71733 3.73568 3.86930 3.97855 4.10289 4.17166 4.25108 4.29856 4.35406 4.40608 4.43870 4.58625 4.64618 4.67604 4.71394 4.72965 4.76067 4.82134 4.91532 4.94113 5.01991 5.09454 5.13167 5.17972 5.27202 5.38835 5.48999 5.56819 6.29562 6.50525 6.52632 7.19679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.315 6.315 3 C 0.170 3.830 4 C -0.197 4.197 5 C 0.553 3.447 6 O -0.568 6.568 7 N -0.717 5.717 8 C 0.122 3.878 9 C -0.107 4.107 10 C -0.109 4.109 11 H 0.082 0.918 12 C -0.147 4.147 13 C 0.045 3.955 14 H 0.113 0.887 15 F -0.221 7.221 16 C -0.158 4.158 17 C -0.015 4.015 18 C -0.164 4.164 19 C -0.071 4.071 20 O -0.546 6.546 21 Si 0.759 3.241 22 C -0.042 4.042 23 C -0.212 4.212 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.413 0.587 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.067 0.933 36 H 0.152 0.848 37 H 0.132 0.868 38 H 0.386 0.614 39 H -0.281 1.281 40 H -0.306 1.306 41 H 0.158 0.842 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 6.851 -0.466 6.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.121 3.879 4 C -0.201 4.201 5 C 0.341 3.659 6 O -0.448 6.448 7 N -0.370 5.370 8 C -0.002 4.002 9 C -0.144 4.144 10 C -0.128 4.128 11 H 0.100 0.900 12 C -0.185 4.185 13 C 0.009 3.991 14 H 0.131 0.869 15 F -0.202 7.202 16 C -0.195 4.195 17 C -0.034 4.034 18 C -0.165 4.165 19 C -0.181 4.181 20 O -0.354 6.354 21 Si 0.665 3.335 22 C -0.060 4.060 23 C -0.231 4.231 24 H 0.125 0.875 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.251 0.749 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.085 0.915 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.236 0.764 39 H -0.208 1.208 40 H -0.234 1.234 41 H 0.175 0.825 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.361 6.557 -0.508 6.716 hybrid contribution 0.239 -0.456 1.051 1.170 sum -1.122 6.100 0.543 6.226 Atomic orbital electron populations 1.23446 0.76516 1.05445 1.02898 1.86339 1.23232 1.26505 1.86572 1.19443 0.91390 0.85559 0.91486 1.19415 0.91141 0.93990 1.15574 1.18368 0.82756 0.88687 0.76050 1.90812 1.72616 1.30497 1.50889 1.45816 1.05162 1.10823 1.75230 1.21345 0.91096 0.86440 1.01303 1.21691 0.90812 0.97426 1.04520 1.22470 0.95353 0.97579 0.97420 0.89999 1.23609 0.95447 0.99546 0.99883 1.22721 1.00320 0.78850 0.97208 0.86874 1.92775 1.97242 1.43642 1.86580 1.23725 0.95038 1.02596 0.98173 1.21109 1.00805 0.89041 0.92438 1.20190 0.93790 0.95898 1.06632 1.25091 1.02883 0.98703 0.91389 1.86570 1.37776 1.94470 1.16601 0.94194 0.77653 0.74006 0.87650 1.21286 0.93866 0.97835 0.92986 1.21470 1.01768 0.90876 1.08950 0.87546 0.90941 0.90613 0.74922 0.92690 0.92965 0.89518 0.89060 0.90662 0.85868 0.86267 0.91461 0.83007 0.85048 0.76431 1.20775 1.23398 0.82530 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.84 8.57 -68.81 -0.59 -3.43 16 3 C 0.17 0.92 6.70 22.84 0.15 1.08 16 4 C -0.20 -1.02 5.89 -20.01 -0.12 -1.14 16 5 C 0.55 5.22 7.76 86.70 0.67 5.89 16 6 O -0.57 -10.68 15.16 16.94 0.26 -10.43 16 7 N -0.72 -1.17 5.51 -466.28 -2.57 -3.74 16 8 C 0.12 0.18 5.66 86.38 0.49 0.67 16 9 C -0.11 0.56 5.17 30.59 0.16 0.72 16 10 C -0.11 0.29 3.63 -10.27 -0.04 0.25 16 11 H 0.08 0.07 8.13 -2.39 -0.02 0.05 16 12 C -0.15 0.62 7.54 31.12 0.23 0.85 16 13 C 0.04 -0.04 5.69 31.12 0.18 0.14 16 14 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 15 F -0.22 -1.60 17.38 44.97 0.78 -0.82 16 16 C -0.16 0.39 7.53 31.12 0.23 0.62 16 17 C -0.02 0.02 9.09 22.52 0.20 0.23 16 18 C -0.16 0.59 5.39 -19.90 -0.11 0.48 16 19 C -0.07 0.37 2.81 71.23 0.20 0.57 16 20 O -0.55 1.28 12.76 -148.98 -1.90 -0.62 16 21 Si 0.76 -4.24 29.77 68.60 2.04 -2.20 16 22 C -0.04 0.19 8.66 22.30 0.19 0.38 16 23 C -0.21 0.33 9.03 22.34 0.20 0.54 16 24 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.07 -0.33 7.66 -2.39 -0.02 -0.35 16 26 H 0.08 -0.37 7.66 -2.39 -0.02 -0.39 16 27 H 0.41 -2.03 6.50 -92.71 -0.60 -2.63 16 28 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.09 -0.75 7.84 -2.39 -0.02 -0.77 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.20 16 33 H 0.12 -1.07 8.10 -2.39 -0.02 -1.09 16 34 H 0.12 -0.77 7.89 -2.39 -0.02 -0.78 16 35 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.15 -0.88 6.40 -2.91 -0.02 -0.90 16 37 H 0.13 -0.98 7.96 -2.39 -0.02 -1.00 16 38 H 0.39 -2.79 8.70 -74.06 -0.64 -3.43 16 39 H -0.28 0.53 7.11 99.48 0.71 1.23 16 40 H -0.31 -0.91 7.11 99.48 0.71 -0.21 16 41 H 0.16 -1.49 4.85 -2.91 -0.01 -1.51 16 42 H 0.16 -1.07 6.30 -2.91 -0.02 -1.09 16 Total: 0.00 -24.47 348.70 1.64 -22.83 By element: Atomic # 1 Polarization: -13.83 SS G_CDS: -0.15 Total: -13.98 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 3.77 Total: 12.39 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: -2.57 Total: -3.74 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -2.23 Total: -14.48 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.78 Total: -0.82 kcal Atomic # 14 Polarization: -4.24 SS G_CDS: 2.04 Total: -2.20 kcal Total: -24.47 1.64 -22.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_12496546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.912 kcal (2) G-P(sol) polarization free energy of solvation -24.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds