Wall clock time and date at job start Sun Mar 7 2021 02:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39282 * 121.02892 * 2 1 4 4 C 1.46493 * 134.20505 * 359.20197 * 3 2 1 5 5 C 1.50702 * 126.59957 * 0.80690 * 4 3 2 6 6 O 1.42894 * 109.47159 * 74.70727 * 5 4 3 7 7 Si 1.86292 * 109.47221 * 194.71209 * 5 4 3 8 8 C 1.34184 * 106.80279 * 180.54481 * 4 3 2 9 9 N 1.36947 * 109.94970 * 0.26085 * 8 4 3 10 10 C 1.37150 * 110.11637 * 0.02562 * 9 8 4 11 11 N 1.32824 * 132.96525 * 179.97438 * 10 9 8 12 12 C 1.31307 * 121.89329 * 180.02562 * 11 10 9 13 13 C 1.39749 * 121.02346 * 179.66156 * 2 1 3 14 14 C 1.47656 * 120.45924 * 0.05029 * 13 2 1 15 15 O 1.21579 * 119.99813 * 354.00340 * 14 13 2 16 16 N 1.34779 * 120.00220 * 174.00352 * 14 13 2 17 17 C 1.46500 * 120.00094 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47142 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47054 * 180.02562 * 18 17 16 20 20 H 1.08994 * 112.84789 * 316.19228 * 19 18 17 21 21 C 1.53776 * 113.61710 * 87.50666 * 19 18 17 22 22 C 1.53775 * 87.08587 * 139.97899 * 21 19 18 23 23 H 1.08994 * 113.69547 * 220.00743 * 22 21 19 24 24 F 1.39903 * 113.61383 * 89.11273 * 22 21 19 25 25 C 1.53782 * 87.08005 * 334.56701 * 22 21 19 26 26 H 1.08998 * 109.47213 * 264.05294 * 1 2 3 27 27 H 1.09008 * 109.46822 * 24.04765 * 1 2 3 28 28 H 1.08996 * 109.47426 * 144.04890 * 1 2 3 29 29 H 1.09000 * 109.46738 * 314.70959 * 5 4 3 30 30 H 0.96702 * 113.99893 * 60.00079 * 6 5 4 31 31 H 1.48500 * 110.00046 * 179.97438 * 7 5 4 32 32 H 1.48498 * 110.00170 * 301.31643 * 7 5 4 33 33 H 1.07997 * 125.02060 * 180.24907 * 8 4 3 34 34 H 0.96999 * 124.93931 * 180.02562 * 9 8 4 35 35 H 1.07995 * 119.30918 * 179.97438 * 12 11 10 36 36 H 0.96997 * 120.00077 * 359.97438 * 16 14 13 37 37 H 1.08992 * 109.47712 * 300.00320 * 17 16 14 38 38 H 1.09001 * 109.46706 * 60.00285 * 17 16 14 39 39 H 1.09004 * 109.47536 * 300.00315 * 18 17 16 40 40 H 1.09001 * 109.47131 * 60.00492 * 18 17 16 41 41 H 1.09002 * 113.61037 * 254.52911 * 21 19 18 42 42 H 1.09000 * 113.61344 * 25.43083 * 21 19 18 43 43 H 1.08994 * 113.61473 * 270.88146 * 25 22 21 44 44 H 1.08998 * 113.61335 * 139.97961 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8517 2.6100 -0.0146 5 6 0.4529 3.1706 -0.0183 6 8 -0.1193 3.0319 1.2837 7 14 0.5076 4.9735 -0.4839 8 6 2.9950 3.3124 -0.0182 9 7 4.0670 2.4602 -0.0130 10 6 3.6348 1.1586 -0.0063 11 7 4.2720 -0.0068 0.0000 12 6 3.6266 -1.1503 0.0053 13 6 2.2273 -1.1976 0.0071 14 6 1.5224 -2.4950 0.0136 15 8 0.3120 -2.5285 0.1229 16 7 2.2207 -3.6420 -0.1015 17 6 1.5213 -4.9292 -0.0945 18 6 2.5385 -6.0631 -0.2377 19 6 1.8080 -7.4074 -0.2310 20 1 1.0355 -7.4655 0.5358 21 6 1.3326 -7.8572 -1.6225 22 6 1.7612 -9.2790 -1.2230 23 1 2.2439 -9.8333 -2.0278 24 9 0.7521 -10.0110 -0.5882 25 6 2.7518 -8.6215 -0.2476 26 1 -0.3633 -0.1065 1.0221 27 1 -0.3633 0.9386 -0.4188 28 1 -0.3634 -0.8319 -0.6033 29 1 -0.1545 2.6268 -0.7418 30 1 0.3705 3.4915 1.9795 31 1 -0.8660 5.5380 -0.4917 32 1 1.3586 5.7206 0.4767 33 1 3.0601 4.3904 -0.0246 34 1 4.9967 2.7369 -0.0139 35 1 4.1869 -2.0735 0.0099 36 1 3.1863 -3.6152 -0.1891 37 1 0.9801 -5.0436 0.8447 38 1 0.8175 -4.9648 -0.9260 39 1 3.0801 -5.9490 -1.1768 40 1 3.2420 -6.0274 0.5941 41 1 0.2581 -7.7510 -1.7722 42 1 1.9185 -7.4382 -2.4406 43 1 3.7256 -8.4114 -0.6897 44 1 2.8231 -9.1323 0.7127 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_12890568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:25 Heat of formation + Delta-G solvation = -20.428578 kcal Electronic energy + Delta-G solvation = -28009.489607 eV Core-core repulsion = 23844.115630 eV Total energy + Delta-G solvation = -4165.373978 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.65852 -42.85973 -40.98665 -39.42191 -38.74373 -37.84818 -36.31735 -34.98252 -32.48486 -31.86486 -30.57281 -28.94348 -26.86132 -26.62246 -25.90614 -24.52943 -23.88558 -22.74003 -21.86394 -20.69698 -20.40567 -19.32677 -18.82728 -17.74676 -17.57514 -17.29722 -16.98790 -16.85719 -16.66685 -16.51757 -16.19857 -15.95556 -15.63869 -15.53689 -15.33918 -15.12682 -14.72899 -14.55880 -14.09893 -14.03110 -13.79545 -13.71784 -13.61999 -13.46080 -13.29628 -13.13820 -13.01815 -12.49184 -12.46343 -11.93881 -11.79961 -11.77729 -11.32974 -11.18251 -11.14869 -10.99479 -10.55666 -10.27240 -10.17591 -9.62307 -9.13214 -4.84245 -0.35399 -0.08394 1.34959 1.41105 1.62297 1.68111 1.79391 2.04831 2.07969 2.75166 3.30563 3.31024 3.37153 3.44139 3.55613 3.61658 3.63714 3.69317 3.71386 3.78222 3.90182 4.12275 4.12969 4.25811 4.27869 4.33748 4.37780 4.47281 4.60378 4.62481 4.69574 4.75804 4.77110 4.80801 4.85491 4.95295 5.00178 5.05236 5.13198 5.18849 5.22074 5.24489 5.35092 5.45830 5.52110 5.72844 6.21635 6.47589 6.59124 6.82512 7.16650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.062 3.938 3 C -0.166 4.166 4 C -0.197 4.197 5 C -0.060 4.060 6 O -0.550 6.550 7 Si 0.781 3.219 8 C 0.091 3.909 9 N -0.559 5.559 10 C 0.289 3.711 11 N -0.515 5.515 12 C 0.182 3.818 13 C -0.242 4.242 14 C 0.567 3.433 15 O -0.570 6.570 16 N -0.712 5.712 17 C 0.121 3.879 18 C -0.108 4.108 19 C -0.109 4.109 20 H 0.081 0.919 21 C -0.157 4.157 22 C 0.043 3.957 23 H 0.113 0.887 24 F -0.222 7.222 25 C -0.148 4.148 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.385 0.615 31 H -0.309 1.309 32 H -0.259 1.259 33 H 0.221 0.779 34 H 0.439 0.561 35 H 0.196 0.804 36 H 0.414 0.586 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.443 3.431 -3.595 9.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.053 3.947 3 C -0.173 4.173 4 C -0.204 4.204 5 C -0.168 4.168 6 O -0.358 6.358 7 Si 0.684 3.316 8 C -0.036 4.036 9 N -0.166 5.166 10 C 0.056 3.944 11 N -0.229 5.229 12 C 0.013 3.987 13 C -0.249 4.249 14 C 0.355 3.645 15 O -0.450 6.450 16 N -0.365 5.365 17 C -0.002 4.002 18 C -0.146 4.146 19 C -0.128 4.128 20 H 0.099 0.901 21 C -0.194 4.194 22 C 0.007 3.993 23 H 0.130 0.870 24 F -0.203 7.203 25 C -0.186 4.186 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.234 0.766 31 H -0.237 1.237 32 H -0.184 1.184 33 H 0.237 0.763 34 H 0.280 0.720 35 H 0.213 0.787 36 H 0.253 0.747 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.019 3.979 -3.579 9.641 hybrid contribution -0.559 -0.540 1.436 1.633 sum 7.460 3.439 -2.143 8.489 Atomic orbital electron populations 1.20995 0.89522 1.03361 1.02928 1.20057 0.96948 0.90265 0.87392 1.19747 0.93313 0.94386 1.09886 1.20711 0.96114 0.90250 1.13320 1.24818 0.90610 1.13781 0.87604 1.86607 1.55042 1.76587 1.17547 0.94115 0.79194 0.70043 0.88267 1.22324 0.83979 0.97205 1.00123 1.41596 1.10608 1.01705 1.62677 1.18767 0.89451 0.86871 0.99347 1.66523 1.40798 0.96454 1.19101 1.22982 0.89560 0.95372 0.90783 1.20511 0.95548 0.93275 1.15555 1.18048 0.86442 0.84166 0.75868 1.90750 1.15298 1.87652 1.51344 1.45767 1.11516 1.05085 1.74143 1.21375 0.95718 0.81620 1.01504 1.21705 0.97226 0.91033 1.04618 1.22466 0.98479 0.94272 0.97584 0.90070 1.23724 1.02761 0.94328 0.98621 1.22746 0.87533 0.92354 0.96666 0.86968 1.92775 1.63589 1.79541 1.84420 1.23619 0.98976 0.95793 1.00190 0.91334 0.90573 0.89958 0.87184 0.76640 1.23699 1.18400 0.76303 0.72003 0.78718 0.74742 0.92837 0.92273 0.88798 0.89473 0.91445 0.86118 0.85801 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 8.69 71.24 0.62 -0.42 16 2 C 0.06 0.50 5.98 -19.25 -0.12 0.39 16 3 C -0.17 -0.93 6.16 -20.19 -0.12 -1.06 16 4 C -0.20 0.01 5.57 -18.64 -0.10 -0.09 16 5 C -0.06 0.03 2.06 71.24 0.15 0.18 16 6 O -0.55 -1.73 12.88 -148.98 -1.92 -3.65 16 7 Si 0.78 -4.05 30.83 68.60 2.11 -1.93 16 8 C 0.09 -0.52 10.44 82.97 0.87 0.34 16 9 N -0.56 1.99 6.04 -192.25 -1.16 0.83 16 10 C 0.29 1.11 8.42 134.03 1.13 2.24 16 11 N -0.52 -2.21 10.37 -191.75 -1.99 -4.20 16 12 C 0.18 0.25 10.67 85.20 0.91 1.16 16 13 C -0.24 -1.36 5.89 -20.00 -0.12 -1.48 16 14 C 0.57 3.78 7.72 86.73 0.67 4.45 16 15 O -0.57 -8.18 13.49 -3.97 -0.05 -8.24 16 16 N -0.71 0.89 5.51 -466.16 -2.57 -1.68 16 17 C 0.12 -0.14 5.66 86.38 0.49 0.35 16 18 C -0.11 0.79 5.17 30.59 0.16 0.95 16 19 C -0.11 0.44 3.63 -10.27 -0.04 0.40 16 20 H 0.08 -0.03 8.13 -2.39 -0.02 -0.05 16 21 C -0.16 0.58 7.52 31.12 0.23 0.82 16 22 C 0.04 -0.07 5.69 31.12 0.18 0.11 16 23 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 24 F -0.22 -1.48 17.38 44.97 0.78 -0.70 16 25 C -0.15 0.76 7.54 31.12 0.23 0.99 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.53 5.06 -2.38 -0.01 0.51 16 28 H 0.08 0.98 5.95 -2.39 -0.01 0.97 16 29 H 0.11 0.05 6.05 -2.39 -0.01 0.04 16 30 H 0.38 -1.23 8.70 -74.06 -0.64 -1.88 16 31 H -0.31 -1.27 7.11 99.48 0.71 -0.57 16 32 H -0.26 1.27 7.00 99.48 0.70 1.97 16 33 H 0.22 -3.02 6.28 -2.91 -0.02 -3.03 16 34 H 0.44 -4.00 8.96 -92.71 -0.83 -4.83 16 35 H 0.20 -1.43 6.43 -2.91 -0.02 -1.44 16 36 H 0.41 -3.38 6.55 -92.71 -0.61 -3.99 16 37 H 0.05 0.13 8.14 -2.39 -0.02 0.12 16 38 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.09 -0.99 7.84 -2.38 -0.02 -1.01 16 40 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 41 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.12 -0.95 7.89 -2.39 -0.02 -0.97 16 43 H 0.12 -1.21 8.10 -2.39 -0.02 -1.23 16 44 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: 0.00 -25.88 360.34 -0.63 -26.51 By element: Atomic # 1 Polarization: -15.28 SS G_CDS: -0.97 Total: -16.25 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.13 Total: 9.31 kcal Atomic # 7 Polarization: 0.67 SS G_CDS: -5.72 Total: -5.05 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -1.97 Total: -11.89 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.78 Total: -0.70 kcal Atomic # 14 Polarization: -4.05 SS G_CDS: 2.11 Total: -1.93 kcal Total: -25.88 -0.63 -26.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_12890568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.080 kcal (2) G-P(sol) polarization free energy of solvation -25.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds