Wall clock time and date at job start Sun Mar 7 2021 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86300 * 109.46886 * 2 1 4 4 C 1.50690 * 109.47021 * 119.99877 * 2 1 3 5 5 C 1.38333 * 119.87334 * 65.00009 * 4 2 1 6 6 C 1.38005 * 120.12722 * 179.97438 * 5 4 2 7 7 C 1.39401 * 119.87171 * 359.97438 * 6 5 4 8 8 C 1.48279 * 120.12329 * 179.97438 * 7 6 5 9 9 C 1.39508 * 119.97432 * 180.02562 * 8 7 6 10 10 C 1.37660 * 120.02755 * 180.02562 * 9 8 7 11 11 C 1.39709 * 119.97320 * 359.97438 * 10 9 8 12 12 C 1.47722 * 120.02527 * 179.97438 * 11 10 9 13 13 O 1.21567 * 119.99989 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00100 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 H 1.09007 * 112.84846 * 316.18745 * 17 16 15 19 19 C 1.53776 * 113.62044 * 87.50057 * 17 16 15 20 20 C 1.53778 * 87.08514 * 139.98080 * 19 17 16 21 21 H 1.08997 * 113.61324 * 220.02170 * 20 19 17 22 22 F 1.39898 * 113.68878 * 89.12638 * 20 19 17 23 23 C 1.53781 * 113.61359 * 184.99815 * 17 16 15 24 24 C 1.39711 * 119.95088 * 0.25401 * 11 10 9 25 25 C 1.37668 * 119.97627 * 359.51157 * 24 11 10 26 26 C 1.39393 * 119.74781 * 0.25809 * 7 6 5 27 27 C 1.38004 * 119.86929 * 359.50547 * 26 7 6 28 28 H 0.96697 * 113.99539 * 299.99997 * 1 2 3 29 29 H 1.09000 * 109.47108 * 240.00224 * 2 1 3 30 30 H 1.48499 * 109.99886 * 178.68033 * 3 2 1 31 31 H 1.48500 * 110.00111 * 299.99958 * 3 2 1 32 32 H 1.07995 * 119.93800 * 359.97438 * 5 4 2 33 33 H 1.08003 * 120.06328 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.98666 * 359.97438 * 9 8 7 35 35 H 1.07992 * 120.01593 * 179.97438 * 10 9 8 36 36 H 0.97000 * 119.99708 * 359.97438 * 14 12 11 37 37 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 38 38 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 39 39 H 1.09001 * 109.47194 * 299.99493 * 16 15 14 40 40 H 1.08992 * 109.47399 * 59.99666 * 16 15 14 41 41 H 1.08998 * 113.61532 * 254.53233 * 19 17 16 42 42 H 1.08998 * 113.61221 * 25.42993 * 19 17 16 43 43 H 1.08994 * 113.61519 * 334.56514 * 23 17 16 44 44 H 1.09005 * 113.61355 * 105.38629 * 23 17 16 45 45 H 1.08007 * 120.01073 * 179.74656 * 24 11 10 46 46 H 1.07999 * 119.98713 * 180.23579 * 25 24 11 47 47 H 1.07994 * 120.06865 * 179.74709 * 26 7 6 48 48 H 1.08003 * 119.93682 * 180.20954 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 1.6831 -2.0611 1.3958 6 6 2.1411 -2.7170 2.5203 7 6 2.8556 -2.0158 3.4903 8 6 3.3498 -2.7148 4.7010 9 6 4.0642 -2.0098 5.6701 10 6 4.5240 -2.6578 6.7943 11 6 4.2745 -4.0219 6.9648 12 6 4.7679 -4.7185 8.1704 13 8 5.3908 -4.1047 9.0149 14 7 4.5274 -6.0345 8.3341 15 6 5.0162 -6.7252 9.5300 16 6 4.6119 -8.1995 9.4685 17 6 5.1218 -8.9207 10.7178 18 1 6.1458 -8.6494 10.9748 19 6 4.1487 -8.8564 11.9067 20 6 4.5219 -10.3210 12.1902 21 1 3.6742 -10.9377 12.4889 22 9 5.6248 -10.4659 13.0386 23 6 4.8732 -10.4382 10.6977 24 6 3.5632 -4.7279 5.9914 25 6 3.1002 -4.0768 4.8702 26 6 3.0986 -0.6537 3.3207 27 6 2.6400 -0.0094 2.1897 28 1 -0.3932 0.4417 0.7651 29 1 1.7924 -0.5138 -0.8900 30 1 3.5346 1.7703 0.0321 31 1 1.5615 2.4679 -1.2085 32 1 1.1298 -2.6035 0.6435 33 1 1.9463 -3.7715 2.6486 34 1 4.2572 -0.9555 5.5379 35 1 5.0772 -2.1121 7.5441 36 1 4.0301 -6.5241 7.6604 37 1 4.5821 -6.2657 10.4180 38 1 6.1026 -6.6483 9.5754 39 1 3.5256 -8.2767 9.4229 40 1 5.0463 -8.6587 8.5806 41 1 4.4617 -8.1665 12.6903 42 1 3.1081 -8.7201 11.6123 43 1 4.0308 -10.7343 10.0727 44 1 5.7710 -11.0252 10.5039 45 1 3.3734 -5.7833 6.1202 46 1 2.5470 -4.6216 4.1195 47 1 3.6481 -0.1045 4.0708 48 1 2.8305 1.0452 2.0555 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_13158362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:29 Heat of formation + Delta-G solvation = -41.085131 kcal Electronic energy + Delta-G solvation = -28978.715650 eV Core-core repulsion = 24686.845478 eV Total energy + Delta-G solvation = -4291.870172 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.67136 -41.44862 -40.69705 -39.53007 -39.10904 -37.50805 -36.22198 -34.09527 -32.68787 -32.01833 -31.52333 -30.54639 -27.23779 -26.81279 -25.90784 -24.65584 -24.20532 -22.92446 -22.52254 -22.26501 -21.29230 -20.42498 -19.29562 -18.42833 -17.78257 -17.38715 -17.12723 -16.84988 -16.76390 -16.56305 -16.29015 -16.06503 -15.95567 -15.71618 -15.46077 -15.38228 -15.07096 -14.93276 -14.83557 -14.62137 -14.27866 -14.20596 -14.04616 -13.80127 -13.57366 -13.48958 -13.20000 -13.08393 -12.74137 -12.56745 -12.50887 -12.11374 -11.97263 -11.94039 -11.81071 -11.59915 -11.28657 -11.17253 -10.91850 -10.77436 -10.41669 -10.20586 -10.06283 -9.95241 -9.07267 -5.01243 -0.69135 0.35099 0.40871 0.50176 1.30549 1.62348 1.77999 1.95744 2.05733 2.60871 3.01425 3.28627 3.35222 3.40496 3.54380 3.60519 3.63663 3.66325 3.72847 3.80376 3.86317 3.89350 4.01769 4.04592 4.12387 4.24764 4.27237 4.29551 4.37448 4.43846 4.47874 4.59231 4.64972 4.67959 4.73135 4.74447 4.83071 4.89280 4.91962 4.93255 5.02897 5.09021 5.10687 5.14398 5.18337 5.20870 5.26629 5.35136 5.41831 5.49778 5.50448 5.65661 5.79829 5.93609 6.43651 6.75863 7.10822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.771 3.229 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.107 4.107 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.122 4.122 10 C -0.072 4.072 11 C -0.153 4.153 12 C 0.552 3.448 13 O -0.585 6.585 14 N -0.711 5.711 15 C 0.118 3.882 16 C -0.107 4.107 17 C -0.110 4.110 18 H 0.081 0.919 19 C -0.157 4.157 20 C 0.043 3.957 21 H 0.113 0.887 22 F -0.222 7.222 23 C -0.148 4.148 24 C -0.073 4.073 25 C -0.120 4.120 26 C -0.107 4.107 27 C -0.119 4.119 28 H 0.395 0.605 29 H 0.107 0.893 30 H -0.287 1.287 31 H -0.301 1.301 32 H 0.131 0.869 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.416 0.584 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.073 0.927 45 H 0.159 0.841 46 H 0.157 0.843 47 H 0.147 0.853 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -2.542 -2.458 6.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.183 4.183 3 Si 0.678 3.322 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.140 4.140 10 C -0.091 4.091 11 C -0.156 4.156 12 C 0.341 3.659 13 O -0.466 6.466 14 N -0.364 5.364 15 C -0.005 4.005 16 C -0.145 4.145 17 C -0.129 4.129 18 H 0.099 0.901 19 C -0.195 4.195 20 C 0.007 3.993 21 H 0.131 0.869 22 F -0.203 7.203 23 C -0.185 4.185 24 C -0.092 4.092 25 C -0.138 4.138 26 C -0.125 4.125 27 C -0.136 4.136 28 H 0.245 0.755 29 H 0.124 0.876 30 H -0.214 1.214 31 H -0.229 1.229 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.145 0.855 36 H 0.255 0.745 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.092 0.908 45 H 0.177 0.823 46 H 0.174 0.826 47 H 0.164 0.836 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.256 -1.881 -2.778 5.420 hybrid contribution 0.407 -0.616 -0.164 0.756 sum -3.849 -2.496 -2.942 5.450 Atomic orbital electron populations 1.86476 1.17151 1.82153 1.50523 1.25145 0.85327 1.10575 0.97272 0.93779 0.77883 0.75648 0.84927 1.20529 0.99364 0.95226 0.96874 1.21107 0.99032 0.93987 0.97936 1.21520 0.96857 1.01022 0.93106 1.18937 0.99221 0.93892 0.93978 1.19156 0.96027 0.93973 0.93130 1.21388 0.98237 1.01297 0.93070 1.21262 0.96966 0.93460 0.97371 1.19996 1.04402 0.95224 0.95960 1.18620 0.78832 0.82479 0.85952 1.90776 1.42769 1.67322 1.45754 1.45813 1.57334 1.08643 1.24589 1.21403 0.98892 0.93163 0.87075 1.21696 1.02869 0.91517 0.98376 1.22477 0.99499 0.95757 0.95179 0.90086 1.23727 1.01929 0.95154 0.98669 1.22738 0.86490 0.99953 0.90081 0.86922 1.92775 1.57349 1.96863 1.73316 1.23614 1.04109 0.96116 0.94671 1.21479 0.94639 1.00889 0.92177 1.21479 1.00337 0.93512 0.98460 1.21490 0.99255 0.93718 0.98013 1.21137 0.98379 1.00193 0.93873 0.75474 0.87590 1.21432 1.22944 0.85077 0.83573 0.83363 0.85545 0.74523 0.92382 0.92890 0.88769 0.89454 0.91474 0.86097 0.85762 0.90775 0.82307 0.82582 0.83568 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.44 12.83 -148.98 -1.91 -1.48 16 2 C -0.07 0.11 2.80 71.23 0.20 0.31 16 3 Si 0.77 -2.10 29.79 68.60 2.04 -0.06 16 4 C -0.12 0.17 5.36 -19.82 -0.11 0.07 16 5 C -0.10 0.12 9.67 22.24 0.21 0.34 16 6 C -0.11 0.26 9.43 22.49 0.21 0.47 16 7 C -0.06 0.08 5.88 -20.05 -0.12 -0.04 16 8 C -0.02 0.02 5.88 -20.00 -0.12 -0.09 16 9 C -0.12 0.01 9.41 22.44 0.21 0.22 16 10 C -0.07 -0.25 9.58 22.49 0.22 -0.03 16 11 C -0.15 -0.36 5.88 -20.06 -0.12 -0.48 16 12 C 0.55 3.31 7.77 86.75 0.67 3.99 16 13 O -0.58 -8.98 16.33 -3.93 -0.06 -9.04 16 14 N -0.71 1.18 5.51 -466.09 -2.57 -1.39 16 15 C 0.12 -0.14 5.66 86.38 0.49 0.35 16 16 C -0.11 0.83 5.17 30.59 0.16 0.98 16 17 C -0.11 0.48 3.63 -10.27 -0.04 0.44 16 18 H 0.08 -0.06 8.13 -2.38 -0.02 -0.07 16 19 C -0.16 0.64 7.53 31.12 0.23 0.87 16 20 C 0.04 -0.09 5.69 31.12 0.18 0.09 16 21 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 22 F -0.22 -1.39 17.39 44.97 0.78 -0.61 16 23 C -0.15 0.83 7.54 31.12 0.23 1.06 16 24 C -0.07 0.29 9.52 22.49 0.21 0.51 16 25 C -0.12 0.48 9.41 22.44 0.21 0.69 16 26 C -0.11 0.26 9.43 22.49 0.21 0.48 16 27 C -0.12 0.35 8.65 22.24 0.19 0.54 16 28 H 0.40 -3.45 8.70 -74.06 -0.64 -4.09 16 29 H 0.11 -0.03 7.96 -2.39 -0.02 -0.05 16 30 H -0.29 -0.65 7.11 99.48 0.71 0.06 16 31 H -0.30 -1.55 7.11 99.48 0.71 -0.84 16 32 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 33 H 0.15 -1.00 6.19 -2.91 -0.02 -1.02 16 34 H 0.15 -0.60 6.19 -2.91 -0.02 -0.62 16 35 H 0.13 0.67 7.64 -2.91 -0.02 0.65 16 36 H 0.42 -3.71 6.49 -92.71 -0.60 -4.31 16 37 H 0.06 0.10 8.14 -2.39 -0.02 0.09 16 38 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.09 -1.04 7.84 -2.39 -0.02 -1.06 16 40 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.12 -1.01 7.89 -2.39 -0.02 -1.02 16 43 H 0.12 -1.29 8.10 -2.39 -0.02 -1.31 16 44 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 45 H 0.16 -1.79 6.39 -2.91 -0.02 -1.81 16 46 H 0.16 -1.41 6.19 -2.91 -0.02 -1.43 16 47 H 0.15 -0.90 6.19 -2.91 -0.02 -0.92 16 48 H 0.15 -1.02 4.89 -2.91 -0.01 -1.03 16 Total: 0.00 -24.13 395.61 1.44 -22.69 By element: Atomic # 1 Polarization: -20.68 SS G_CDS: -0.19 Total: -20.88 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 3.35 Total: 10.76 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -2.57 Total: -1.39 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -1.98 Total: -10.52 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.78 Total: -0.61 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: 2.04 Total: -0.06 kcal Total: -24.13 1.44 -22.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_13158362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.392 kcal (2) G-P(sol) polarization free energy of solvation -24.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds