Wall clock time and date at job start Sun Mar 7 2021 02:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47374 * 2 1 4 4 C 1.50701 * 109.47245 * 239.99623 * 2 1 3 5 5 C 1.38899 * 119.67317 * 119.98364 * 4 2 1 6 6 C 1.36469 * 120.61598 * 180.02562 * 5 4 2 7 7 C 1.40067 * 119.82656 * 359.97438 * 6 5 4 8 8 C 1.41597 * 133.37966 * 180.32290 * 7 6 5 9 9 C 1.35862 * 107.72694 * 180.13435 * 8 7 6 10 10 C 1.47067 * 125.42439 * 179.84512 * 9 8 7 11 11 O 1.21643 * 119.99799 * 359.69523 * 10 9 8 12 12 N 1.34775 * 119.99826 * 179.69516 * 10 9 8 13 13 C 1.46502 * 119.99982 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47117 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.46905 * 180.02562 * 14 13 12 16 16 H 1.09002 * 112.90771 * 316.25047 * 15 14 13 17 17 C 1.53779 * 113.61529 * 87.50451 * 15 14 13 18 18 C 1.53779 * 87.08402 * 139.98073 * 17 15 14 19 19 H 1.08997 * 113.61646 * 220.02209 * 18 17 15 20 20 F 1.39901 * 113.61703 * 89.11572 * 18 17 15 21 21 C 1.53784 * 113.61233 * 185.00038 * 15 14 13 22 22 N 1.38150 * 109.15026 * 359.58160 * 9 8 7 23 23 C 1.37495 * 108.78412 * 0.26538 * 22 9 8 24 24 C 1.37707 * 119.67765 * 300.00132 * 4 2 1 25 25 H 0.96694 * 114.00253 * 300.00533 * 1 2 3 26 26 H 1.09003 * 109.46651 * 119.99874 * 2 1 3 27 27 H 1.48501 * 110.00302 * 178.67627 * 3 2 1 28 28 H 1.48498 * 110.00289 * 299.99852 * 3 2 1 29 29 H 1.08001 * 119.69360 * 0.02562 * 5 4 2 30 30 H 1.07999 * 120.08755 * 179.97438 * 6 5 4 31 31 H 1.08005 * 126.13882 * 359.97438 * 8 7 6 32 32 H 0.97004 * 119.99989 * 0.02562 * 12 10 9 33 33 H 1.09000 * 109.46536 * 60.00477 * 13 12 10 34 34 H 1.08994 * 109.47226 * 300.00603 * 13 12 10 35 35 H 1.08994 * 109.46694 * 60.00154 * 14 13 12 36 36 H 1.09001 * 109.46897 * 300.00518 * 14 13 12 37 37 H 1.09006 * 113.61307 * 25.43275 * 17 15 14 38 38 H 1.08999 * 113.69146 * 254.53761 * 17 15 14 39 39 H 1.09004 * 113.61451 * 105.47254 * 21 15 14 40 40 H 1.08994 * 113.61477 * 334.56556 * 21 15 14 41 41 H 0.96993 * 125.60823 * 180.23512 * 22 9 8 42 42 H 1.08001 * 120.09506 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7292 -0.0289 -2.1404 6 6 3.1942 -0.6533 -3.2613 7 6 2.8660 -1.9941 -3.4986 8 6 3.1854 -2.9048 -4.5349 9 6 2.5832 -4.0879 -4.2460 10 6 2.6563 -5.3048 -5.0685 11 8 3.2922 -5.3007 -6.1055 12 7 2.0188 -6.4246 -4.6733 13 6 2.0911 -7.6367 -5.4930 14 6 1.2867 -8.7533 -4.8243 15 6 1.3627 -10.0193 -5.6800 16 1 1.2342 -9.8206 -6.7440 17 6 2.5780 -10.9061 -5.3614 18 6 1.6412 -12.1141 -5.5282 19 1 1.8118 -12.9033 -4.7960 20 9 1.5739 -12.5942 -6.8405 21 6 0.4857 -11.1694 -5.1577 22 7 1.8962 -3.9675 -3.0535 23 6 2.0571 -2.6878 -2.5771 24 6 1.5946 -2.0289 -1.4417 25 1 -0.3933 0.4417 0.7649 26 1 1.7923 -0.5138 0.8900 27 1 3.5347 1.7702 0.0322 28 1 1.5616 2.4679 -1.2085 29 1 2.9840 1.0049 -1.9594 30 1 3.8136 -0.1151 -3.9634 31 1 3.7958 -2.6956 -5.4010 32 1 1.5114 -6.4277 -3.8466 33 1 3.1313 -7.9469 -5.5917 34 1 1.6775 -7.4327 -6.4806 35 1 0.2465 -8.4428 -4.7259 36 1 1.7000 -8.9573 -3.8366 37 1 2.9545 -10.7824 -4.3459 38 1 3.3653 -10.8570 -6.1137 39 1 -0.4172 -11.3322 -5.7464 40 1 0.2902 -11.1178 -4.0867 41 1 1.3842 -4.6700 -2.6232 42 1 0.9738 -2.5503 -0.7281 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_13158378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:34 Heat of formation + Delta-G solvation = -34.373785 kcal Electronic energy + Delta-G solvation = -25160.692744 eV Core-core repulsion = 21215.677587 eV Total energy + Delta-G solvation = -3945.015157 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.69106 -42.82222 -40.76634 -39.42830 -38.88545 -37.01406 -36.34646 -33.47014 -32.31501 -31.00388 -30.56276 -27.39640 -26.82812 -25.81530 -24.26228 -23.20061 -22.86734 -22.05056 -21.29738 -20.46484 -19.69758 -18.38928 -18.05823 -17.45254 -17.33801 -17.00050 -16.94045 -16.59036 -16.38369 -16.11833 -15.73668 -15.58498 -15.19360 -15.09774 -14.88527 -14.76340 -14.54505 -14.43714 -14.06731 -13.84397 -13.52884 -13.43395 -13.14732 -12.80164 -12.60504 -12.35732 -12.24767 -12.03907 -11.89088 -11.85412 -11.57623 -11.21652 -11.08198 -11.00769 -10.40579 -10.26253 -9.47025 -8.94860 -4.90003 -0.49457 0.33639 0.83128 1.33094 1.64383 1.68766 1.89228 2.03465 2.07963 2.59810 3.25836 3.32129 3.39190 3.46216 3.55281 3.57595 3.69792 3.81612 3.83378 3.85455 4.05704 4.12323 4.18578 4.21082 4.31254 4.35214 4.39203 4.55392 4.56071 4.68982 4.71361 4.75684 4.80091 4.84799 4.89321 5.00227 5.04162 5.11790 5.13739 5.22020 5.23541 5.37477 5.43273 5.47044 5.81598 6.16756 6.35317 6.86868 6.94334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.073 4.073 3 Si 0.772 3.228 4 C -0.062 4.062 5 C -0.167 4.167 6 C -0.060 4.060 7 C -0.137 4.137 8 C -0.120 4.120 9 C 0.016 3.984 10 C 0.584 3.416 11 O -0.561 6.561 12 N -0.710 5.710 13 C 0.118 3.882 14 C -0.108 4.108 15 C -0.109 4.109 16 H 0.083 0.917 17 C -0.158 4.158 18 C 0.043 3.957 19 H 0.113 0.887 20 F -0.222 7.222 21 C -0.148 4.148 22 N -0.558 5.558 23 C 0.111 3.889 24 C -0.100 4.100 25 H 0.404 0.596 26 H 0.101 0.899 27 H -0.289 1.289 28 H -0.301 1.301 29 H 0.119 0.881 30 H 0.142 0.858 31 H 0.155 0.845 32 H 0.413 0.587 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.435 0.565 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 -0.886 10.208 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.183 4.183 3 Si 0.679 3.321 4 C -0.064 4.064 5 C -0.185 4.185 6 C -0.079 4.079 7 C -0.142 4.142 8 C -0.147 4.147 9 C -0.094 4.094 10 C 0.371 3.629 11 O -0.440 6.440 12 N -0.361 5.361 13 C -0.005 4.005 14 C -0.145 4.145 15 C -0.128 4.128 16 H 0.101 0.899 17 C -0.195 4.195 18 C 0.007 3.993 19 H 0.130 0.870 20 F -0.203 7.203 21 C -0.186 4.186 22 N -0.164 5.164 23 C 0.000 4.000 24 C -0.120 4.120 25 H 0.256 0.744 26 H 0.118 0.882 27 H -0.217 1.217 28 H -0.229 1.229 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.250 0.750 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.276 0.724 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.816 -0.848 8.490 8.985 hybrid contribution -0.120 -0.762 -0.419 0.878 sum -2.936 -1.610 8.071 8.738 Atomic orbital electron populations 1.86438 1.16984 1.82357 1.51507 1.24752 0.85997 1.10609 0.96991 0.94567 0.77271 0.75584 0.84659 1.19431 0.97273 0.93647 0.96031 1.20507 1.02361 0.99458 0.96211 1.20525 0.98107 0.92416 0.96825 1.18377 1.03601 0.95174 0.97003 1.21082 1.02430 0.91146 1.00062 1.19984 1.03236 0.96129 0.90034 1.17253 0.79178 0.82325 0.84157 1.90868 1.43543 1.84305 1.25272 1.45759 1.52331 1.10903 1.27141 1.21487 1.01319 0.83286 0.94432 1.21704 1.01170 0.92139 0.99520 1.22469 0.96493 0.93740 1.00105 0.89909 1.23732 0.96990 0.94297 1.04486 1.22739 1.00033 0.97151 0.79383 0.86962 1.92777 1.97197 1.90000 1.40303 1.23618 0.96892 0.93987 1.04067 1.41731 1.44849 1.10927 1.18935 1.18427 0.99868 0.85207 0.96503 1.20040 1.01953 0.94011 0.96039 0.74431 0.88160 1.21680 1.22897 0.86325 0.84003 0.82716 0.74973 0.91809 0.92299 0.89461 0.88781 0.86147 0.91365 0.90770 0.85820 0.72364 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.26 12.73 -148.98 -1.90 -0.63 16 2 C -0.07 0.15 2.80 71.24 0.20 0.35 16 3 Si 0.77 -1.87 29.75 68.60 2.04 0.17 16 4 C -0.06 -0.25 5.43 -19.83 -0.11 -0.36 16 5 C -0.17 -1.02 8.59 22.01 0.19 -0.83 16 6 C -0.06 -0.38 10.06 22.30 0.22 -0.15 16 7 C -0.14 -0.98 6.16 -21.36 -0.13 -1.11 16 8 C -0.12 -0.88 10.53 22.55 0.24 -0.64 16 9 C 0.02 0.07 6.97 39.91 0.28 0.35 16 10 C 0.58 3.14 7.80 86.56 0.68 3.82 16 11 O -0.56 -7.99 16.84 -4.17 -0.07 -8.06 16 12 N -0.71 2.07 5.55 -466.72 -2.59 -0.52 16 13 C 0.12 -0.31 5.67 86.38 0.49 0.18 16 14 C -0.11 0.94 5.17 30.59 0.16 1.10 16 15 C -0.11 0.56 3.63 -10.27 -0.04 0.53 16 16 H 0.08 -0.13 8.13 -2.39 -0.02 -0.15 16 17 C -0.16 0.74 7.53 31.12 0.23 0.97 16 18 C 0.04 -0.11 5.69 31.12 0.18 0.07 16 19 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 20 F -0.22 -1.31 17.38 44.97 0.78 -0.53 16 21 C -0.15 0.90 7.54 31.12 0.23 1.13 16 22 N -0.56 0.54 6.07 -177.18 -1.08 -0.53 16 23 C 0.11 0.43 7.25 39.13 0.28 0.72 16 24 C -0.10 -0.25 9.61 22.37 0.22 -0.04 16 25 H 0.40 -5.16 8.74 -74.06 -0.65 -5.81 16 26 H 0.10 -0.69 7.96 -2.39 -0.02 -0.71 16 27 H -0.29 -0.93 7.11 99.48 0.71 -0.22 16 28 H -0.30 -1.78 7.11 99.48 0.71 -1.07 16 29 H 0.12 0.62 4.82 -2.91 -0.01 0.60 16 30 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 31 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 32 H 0.41 -4.16 7.53 -92.71 -0.70 -4.86 16 33 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 36 H 0.09 -1.13 7.84 -2.39 -0.02 -1.15 16 37 H 0.12 -1.07 7.90 -2.38 -0.02 -1.09 16 38 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.12 -1.33 8.10 -2.39 -0.02 -1.35 16 41 H 0.43 -3.88 8.12 -92.71 -0.75 -4.63 16 42 H 0.15 -0.31 8.06 -2.91 -0.02 -0.33 16 Total: 0.00 -24.98 355.11 -0.47 -25.45 By element: Atomic # 1 Polarization: -20.45 SS G_CDS: -0.98 Total: -21.43 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 3.32 Total: 6.09 kcal Atomic # 7 Polarization: 2.61 SS G_CDS: -3.67 Total: -1.06 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -1.97 Total: -8.69 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.78 Total: -0.53 kcal Atomic # 14 Polarization: -1.87 SS G_CDS: 2.04 Total: 0.17 kcal Total: -24.98 -0.47 -25.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_13158378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.919 kcal (2) G-P(sol) polarization free energy of solvation -24.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds