Wall clock time and date at job start Sun Mar 7 2021 02:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86303 * 109.47319 * 2 1 4 4 C 1.50703 * 109.47383 * 119.99513 * 2 1 3 5 5 C 1.38325 * 119.87531 * 65.00134 * 4 2 1 6 6 C 1.38017 * 120.12122 * 180.25714 * 5 4 2 7 7 C 1.39341 * 119.87360 * 359.46811 * 6 5 4 8 8 C 1.48397 * 120.11602 * 180.25096 * 7 6 5 9 9 C 1.39308 * 120.12128 * 236.92455 * 8 7 6 10 10 C 1.50699 * 120.06404 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.47411 * 84.32861 * 10 9 8 12 12 O 1.21284 * 119.99704 * 5.62071 * 11 10 9 13 13 N 1.34770 * 120.00401 * 185.62656 * 11 10 9 14 14 C 1.46504 * 120.00394 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47411 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46780 * 179.97438 * 15 14 13 17 17 H 1.08993 * 112.85317 * 43.81023 * 16 15 14 18 18 C 1.53783 * 113.60966 * 175.00009 * 16 15 14 19 19 C 1.53787 * 87.08196 * 139.98288 * 18 16 15 20 20 H 1.08998 * 113.61052 * 220.01610 * 19 18 16 21 21 F 1.39901 * 113.61204 * 89.11636 * 19 18 16 22 22 C 1.53780 * 113.61584 * 272.49279 * 16 15 14 23 23 C 1.38041 * 119.87809 * 180.02562 * 9 8 7 24 24 C 1.38296 * 120.12160 * 0.02846 * 23 9 8 25 25 C 1.38345 * 120.24378 * 359.97438 * 24 23 9 26 26 C 1.38002 * 120.11828 * 359.67496 * 25 24 23 27 27 C 1.39329 * 119.76231 * 0.53125 * 7 6 5 28 28 C 1.38025 * 119.87450 * 359.72285 * 27 7 6 29 29 H 0.96705 * 113.99887 * 300.00415 * 1 2 3 30 30 H 1.08995 * 109.47472 * 239.99805 * 2 1 3 31 31 H 1.48501 * 110.00062 * 178.68292 * 3 2 1 32 32 H 1.48504 * 109.99743 * 299.99925 * 3 2 1 33 33 H 1.08000 * 119.93526 * 359.97438 * 5 4 2 34 34 H 1.07994 * 120.06132 * 179.70284 * 6 5 4 35 35 H 1.08997 * 109.47428 * 204.32826 * 10 9 8 36 36 H 1.08999 * 109.46877 * 324.32850 * 10 9 8 37 37 H 0.96998 * 119.99951 * 359.97438 * 13 11 10 38 38 H 1.09006 * 109.46707 * 299.99623 * 14 13 11 39 39 H 1.08999 * 109.47342 * 59.99305 * 14 13 11 40 40 H 1.08993 * 109.47063 * 299.99937 * 15 14 13 41 41 H 1.09008 * 109.46852 * 59.99913 * 15 14 13 42 42 H 1.09002 * 113.61582 * 254.53066 * 18 16 15 43 43 H 1.09001 * 113.61545 * 25.34986 * 18 16 15 44 44 H 1.08996 * 113.62017 * 334.57429 * 22 16 15 45 45 H 1.09004 * 113.60975 * 105.47461 * 22 16 15 46 46 H 1.08005 * 119.94022 * 179.97438 * 23 9 8 47 47 H 1.07998 * 119.88052 * 179.97438 * 24 23 9 48 48 H 1.07997 * 119.94281 * 179.97438 * 25 24 23 49 49 H 1.08000 * 120.05804 * 180.29993 * 26 25 24 50 50 H 1.07999 * 120.06457 * 179.75011 * 27 7 6 51 51 H 1.08007 * 119.93758 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6832 -2.0610 1.3960 6 6 2.1363 -2.7154 2.5235 7 6 2.8546 -2.0153 3.4907 8 6 3.3492 -2.7149 4.7024 9 6 2.9861 -2.2614 5.9686 10 6 2.0900 -1.0582 6.1114 11 6 0.6501 -1.4875 5.9955 12 8 0.3731 -2.6657 5.9171 13 7 -0.3297 -0.5624 5.9788 14 6 -1.7295 -0.9798 5.8666 15 6 -2.6321 0.2556 5.8714 16 6 -4.0939 -0.1804 5.7536 17 1 -4.3348 -1.0304 6.3919 18 6 -5.0946 0.9814 5.8714 19 6 -5.8964 0.3008 4.7494 20 1 -6.3101 0.9999 4.0226 21 9 -6.8391 -0.6222 5.2149 22 6 -4.5734 -0.3424 4.3015 23 6 3.4495 -2.9156 7.0924 24 6 4.2732 -4.0189 6.9629 25 6 4.6370 -4.4735 5.7080 26 6 4.1736 -3.8314 4.5777 27 6 3.1017 -0.6549 3.3190 28 6 2.6393 -0.0094 2.1900 29 1 -0.3933 0.4418 0.7651 30 1 1.7923 -0.5138 -0.8899 31 1 3.5346 1.7703 0.0321 32 1 1.5615 2.4679 -1.2086 33 1 1.1298 -2.6034 0.6437 34 1 1.9379 -3.7689 2.6540 35 1 2.2542 -0.5963 7.0849 36 1 2.3192 -0.3392 5.3249 37 1 -0.1082 0.3799 6.0417 38 1 -1.8711 -1.5301 4.9364 39 1 -1.9864 -1.6202 6.7104 40 1 -2.4904 0.8056 6.8017 41 1 -2.3753 0.8964 5.0277 42 1 -5.6189 1.0110 6.8266 43 1 -4.6773 1.9475 5.5875 44 1 -4.0142 0.2615 3.5870 45 1 -4.6769 -1.3817 3.9893 46 1 3.1690 -2.5646 8.0745 47 1 4.6338 -4.5275 7.8448 48 1 5.2808 -5.3353 5.6126 49 1 4.4543 -4.1901 3.5984 50 1 3.6544 -0.1067 4.0675 51 1 2.8306 1.0451 2.0556 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_13158394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:38 Heat of formation + Delta-G solvation = -44.460283 kcal Electronic energy + Delta-G solvation = -33390.314392 eV Core-core repulsion = 28942.760243 eV Total energy + Delta-G solvation = -4447.554149 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.64562 -41.48070 -40.44585 -39.62812 -39.21442 -37.54846 -36.00297 -34.30437 -33.49991 -31.98995 -31.76148 -30.71482 -28.75136 -26.79949 -26.59820 -25.68273 -23.99153 -23.48913 -22.94429 -22.54760 -21.77147 -21.21873 -20.36577 -18.60358 -18.02901 -17.93113 -17.24623 -17.07718 -16.95185 -16.77211 -16.61217 -16.40482 -16.16842 -16.07548 -15.81844 -15.61097 -15.45037 -15.32315 -14.78154 -14.75713 -14.57206 -14.44394 -14.16771 -14.02646 -13.73705 -13.67279 -13.43578 -13.35473 -13.20975 -13.07526 -12.87860 -12.44824 -12.36242 -12.24228 -12.02668 -11.92798 -11.90948 -11.74973 -11.61709 -11.17985 -11.09862 -10.81753 -10.44532 -10.15869 -10.04762 -9.95764 -9.74523 -9.22872 -5.00896 -0.10059 0.36660 0.40373 0.59887 1.32067 1.66540 1.71123 1.99480 2.24994 2.61826 2.88215 3.33131 3.40085 3.46917 3.59030 3.66519 3.70075 3.74994 3.75730 3.91470 3.93445 3.94904 3.99785 4.04903 4.16886 4.21173 4.32566 4.34469 4.38129 4.46113 4.50206 4.52749 4.57320 4.59070 4.64961 4.70997 4.78607 4.80935 4.85391 4.88057 4.97286 4.98565 5.00931 5.07567 5.09806 5.20435 5.25504 5.32496 5.39639 5.47932 5.51314 5.53693 5.54281 5.57243 5.65006 5.92318 6.04761 6.63040 6.77510 7.34824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.080 4.080 3 Si 0.788 3.212 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.116 4.116 7 C -0.042 4.042 8 C -0.053 4.053 9 C -0.062 4.062 10 C -0.109 4.109 11 C 0.513 3.487 12 O -0.582 6.582 13 N -0.716 5.716 14 C 0.123 3.877 15 C -0.105 4.105 16 C -0.110 4.110 17 H 0.075 0.925 18 C -0.146 4.146 19 C 0.042 3.958 20 H 0.113 0.887 21 F -0.224 7.224 22 C -0.156 4.156 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.122 4.122 27 C -0.108 4.108 28 C -0.107 4.107 29 H 0.395 0.605 30 H 0.100 0.900 31 H -0.285 1.285 32 H -0.302 1.302 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.419 0.581 38 H 0.048 0.952 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.061 0.939 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.124 0.876 50 H 0.155 0.845 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 9.463 3.099 10.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.189 4.189 3 Si 0.694 3.306 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.134 4.134 7 C -0.042 4.042 8 C -0.053 4.053 9 C -0.062 4.062 10 C -0.148 4.148 11 C 0.300 3.700 12 O -0.462 6.462 13 N -0.369 5.369 14 C -0.001 4.001 15 C -0.142 4.142 16 C -0.129 4.129 17 H 0.093 0.907 18 C -0.183 4.183 19 C 0.006 3.994 20 H 0.131 0.869 21 F -0.205 7.205 22 C -0.194 4.194 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.140 4.140 27 C -0.126 4.126 28 C -0.124 4.124 29 H 0.244 0.756 30 H 0.118 0.882 31 H -0.212 1.212 32 H -0.230 1.230 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.257 0.743 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.080 0.920 46 H 0.157 0.843 47 H 0.157 0.843 48 H 0.155 0.845 49 H 0.142 0.858 50 H 0.172 0.828 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.567 8.877 2.096 9.475 hybrid contribution -0.140 -1.419 -0.306 1.458 sum 2.427 7.458 1.789 8.044 Atomic orbital electron populations 1.86485 1.17264 1.82245 1.50360 1.25302 0.85326 1.11357 0.96895 0.93787 0.77723 0.74423 0.84657 1.20453 0.99897 0.94410 0.97284 1.20984 0.99040 0.94615 0.97220 1.21252 0.98252 0.99857 0.94059 1.18868 0.97876 0.94184 0.93294 1.18752 0.98286 0.96091 0.92131 1.19487 0.97269 0.97317 0.92124 1.20964 0.88822 0.97255 1.07772 1.20921 0.88376 0.85604 0.75081 1.90736 1.84916 1.19779 1.50740 1.45846 1.05824 1.10623 1.74657 1.21255 0.80431 0.97920 1.00536 1.21678 0.91685 0.96101 1.04741 1.22462 0.94912 0.98691 0.96859 0.90655 1.23612 0.96478 0.99560 0.98697 1.22772 0.87412 0.90454 0.98795 0.86896 1.92771 1.67738 1.69436 1.90545 1.23728 0.95538 1.02185 0.97914 1.21246 0.97568 0.96011 0.98690 1.21481 0.97972 0.96727 0.98156 1.21350 1.00389 1.00379 0.92489 1.21351 0.98050 0.95268 0.99358 1.21402 0.99891 0.92776 0.98493 1.21151 0.97667 1.00310 0.93319 0.75567 0.88228 1.21158 1.23027 0.86281 0.87205 0.84895 0.85189 0.74342 0.93316 0.93813 0.89497 0.88346 0.90977 0.85466 0.85722 0.91991 0.84329 0.84261 0.84489 0.85778 0.82762 0.82666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.29 12.83 -148.98 -1.91 -1.62 16 2 C -0.08 0.10 2.80 71.24 0.20 0.29 16 3 Si 0.79 -3.47 29.79 68.60 2.04 -1.43 16 4 C -0.12 0.03 5.36 -19.82 -0.11 -0.07 16 5 C -0.10 -0.38 9.67 22.24 0.21 -0.17 16 6 C -0.12 -0.65 9.63 22.48 0.22 -0.43 16 7 C -0.04 -0.13 4.90 -20.04 -0.10 -0.23 16 8 C -0.05 -0.26 5.40 -20.04 -0.11 -0.37 16 9 C -0.06 -0.17 4.38 -19.65 -0.09 -0.26 16 10 C -0.11 0.39 5.33 29.10 0.16 0.55 16 11 C 0.51 1.21 7.81 87.66 0.68 1.89 16 12 O -0.58 -7.95 16.05 -3.04 -0.05 -8.00 16 13 N -0.72 3.28 5.56 -463.05 -2.57 0.71 16 14 C 0.12 -0.27 5.66 86.38 0.49 0.22 16 15 C -0.10 0.94 5.17 30.59 0.16 1.09 16 16 C -0.11 0.53 3.63 -10.27 -0.04 0.49 16 17 H 0.08 -0.02 8.13 -2.39 -0.02 -0.04 16 18 C -0.15 0.90 7.54 31.12 0.23 1.14 16 19 C 0.04 -0.09 5.69 31.12 0.18 0.08 16 20 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 21 F -0.22 -1.46 17.38 44.97 0.78 -0.68 16 22 C -0.16 0.67 7.53 31.12 0.23 0.91 16 23 C -0.12 -0.31 9.67 22.24 0.21 -0.10 16 24 C -0.13 -0.36 10.04 22.31 0.22 -0.14 16 25 C -0.13 -0.48 10.03 22.24 0.22 -0.26 16 26 C -0.12 -0.65 9.63 22.48 0.22 -0.44 16 27 C -0.11 0.27 7.75 22.48 0.17 0.45 16 28 C -0.11 0.42 8.65 22.24 0.19 0.61 16 29 H 0.39 -3.67 8.70 -74.05 -0.64 -4.31 16 30 H 0.10 0.11 7.96 -2.39 -0.02 0.09 16 31 H -0.28 -0.09 7.11 99.48 0.71 0.62 16 32 H -0.30 -1.08 7.11 99.48 0.71 -0.38 16 33 H 0.12 0.50 8.06 -2.91 -0.02 0.48 16 34 H 0.11 0.83 8.06 -2.91 -0.02 0.80 16 35 H 0.13 -1.25 8.05 -2.39 -0.02 -1.27 16 36 H 0.13 -1.08 4.71 -2.39 -0.01 -1.09 16 37 H 0.42 -5.22 8.47 -92.71 -0.79 -6.01 16 38 H 0.05 0.10 8.14 -2.38 -0.02 0.08 16 39 H 0.04 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.10 -1.29 7.84 -2.38 -0.02 -1.31 16 42 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.13 -1.46 8.10 -2.39 -0.02 -1.48 16 44 H 0.12 -1.16 7.89 -2.39 -0.02 -1.17 16 45 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 46 H 0.14 -0.21 8.06 -2.91 -0.02 -0.24 16 47 H 0.14 -0.17 8.06 -2.91 -0.02 -0.20 16 48 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 49 H 0.12 0.47 8.06 -2.91 -0.02 0.44 16 50 H 0.15 -1.19 7.17 -2.91 -0.02 -1.21 16 51 H 0.16 -1.53 4.89 -2.91 -0.01 -1.54 16 Total: 0.00 -26.84 421.18 1.43 -25.41 By element: Atomic # 1 Polarization: -19.23 SS G_CDS: -0.43 Total: -19.66 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 3.57 Total: 5.28 kcal Atomic # 7 Polarization: 3.28 SS G_CDS: -2.57 Total: 0.71 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -1.96 Total: -9.63 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.78 Total: -0.68 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.04 Total: -1.43 kcal Total: -26.84 1.43 -25.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_13158394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.049 kcal (2) G-P(sol) polarization free energy of solvation -26.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds