Wall clock time and date at job start Sun Mar 7 2021 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47144 * 2 1 4 4 C 1.50696 * 109.47281 * 120.00368 * 2 1 3 5 5 C 1.34196 * 126.53915 * 255.02169 * 4 2 1 6 6 N 1.36866 * 109.96795 * 179.97438 * 5 4 2 7 7 C 1.37394 * 109.97890 * 0.27239 * 6 5 4 8 8 C 1.39336 * 133.24548 * 180.50887 * 7 6 5 9 9 C 1.36357 * 120.23409 * 179.60018 * 8 7 6 10 10 C 1.40166 * 120.66946 * 359.67228 * 9 8 7 11 11 C 1.47649 * 119.97038 * 180.02562 * 10 9 8 12 12 O 1.21586 * 119.99966 * 179.97438 * 11 10 9 13 13 N 1.34781 * 120.00408 * 359.97438 * 11 10 9 14 14 C 1.46496 * 120.00019 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46732 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.46976 * 179.97438 * 15 14 13 17 17 H 1.09001 * 112.85170 * 316.19558 * 16 15 14 18 18 C 1.53781 * 113.61665 * 87.49944 * 16 15 14 19 19 C 1.53775 * 87.08101 * 139.97919 * 18 16 15 20 20 H 1.09003 * 113.61322 * 220.01613 * 19 18 16 21 21 F 1.39905 * 113.61309 * 89.12027 * 19 18 16 22 22 C 1.53774 * 87.08487 * 334.57002 * 19 18 16 23 23 C 1.39187 * 120.05307 * 359.97438 * 10 9 8 24 24 C 1.39227 * 119.39666 * 0.02608 * 23 10 9 25 25 H 0.96695 * 113.99618 * 299.99710 * 1 2 3 26 26 H 1.09004 * 109.47045 * 240.00111 * 2 1 3 27 27 H 1.48502 * 110.00168 * 178.68047 * 3 2 1 28 28 H 1.48500 * 110.00240 * 300.00211 * 3 2 1 29 29 H 1.08001 * 125.01765 * 0.02562 * 5 4 2 30 30 H 0.97001 * 125.00715 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.88138 * 359.26533 * 8 7 6 32 32 H 1.08002 * 119.66010 * 179.69278 * 9 8 7 33 33 H 0.96999 * 119.99809 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.47257 * 299.99115 * 14 13 11 35 35 H 1.08997 * 109.47325 * 59.99987 * 14 13 11 36 36 H 1.09002 * 109.46988 * 299.99348 * 15 14 13 37 37 H 1.08997 * 109.47252 * 59.99910 * 15 14 13 38 38 H 1.08998 * 113.61822 * 254.53301 * 18 16 15 39 39 H 1.09006 * 113.61463 * 25.42944 * 18 16 15 40 40 H 1.09001 * 113.61385 * 270.88547 * 22 19 18 41 41 H 1.08999 * 113.61852 * 139.98215 * 22 19 18 42 42 H 1.08003 * 120.30024 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.4605 -0.1387 2.3231 6 7 2.8021 -1.1005 3.2349 7 6 2.5004 -2.3458 2.7391 8 6 2.6331 -3.6350 3.2508 9 6 2.2303 -4.7104 2.5156 10 6 1.6722 -4.5369 1.2416 11 6 1.2407 -5.7123 0.4591 12 8 0.7562 -5.5624 -0.6459 13 7 1.3839 -6.9514 0.9696 14 6 0.9563 -8.1176 0.1930 15 6 1.2269 -9.3919 0.9954 16 6 0.7797 -10.6098 0.1845 17 1 -0.1883 -10.4665 -0.2955 18 6 1.8641 -11.1522 -0.7614 19 6 1.3974 -12.5616 -0.3611 20 1 2.2148 -13.2697 -0.2239 21 9 0.3723 -13.0634 -1.1702 22 6 0.8963 -11.9374 0.9519 23 6 1.5236 -3.2575 0.7140 24 6 1.9341 -2.1577 1.4625 25 1 -0.3932 0.4417 0.7651 26 1 1.7924 -0.5138 -0.8900 27 1 3.5346 1.7703 0.0321 28 1 1.5615 2.4679 -1.2084 29 1 2.5958 0.9237 2.4628 30 1 3.2026 -0.9285 4.1015 31 1 3.0616 -3.7833 4.2310 32 1 2.3421 -5.7059 2.9193 33 1 1.7708 -7.0710 1.8510 34 1 -0.1103 -8.0418 -0.0189 35 1 1.5113 -8.1533 -0.7444 36 1 2.2934 -9.4679 1.2076 37 1 0.6716 -9.3559 1.9326 38 1 1.6869 -10.9150 -1.8104 39 1 2.8796 -10.9206 -0.4399 40 1 1.6471 -11.9206 1.7419 41 1 -0.0624 -12.3342 1.2861 42 1 1.0937 -3.1192 -0.2671 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_13287722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:46 Heat of formation + Delta-G solvation = -39.027429 kcal Electronic energy + Delta-G solvation = -25390.261206 eV Core-core repulsion = 21445.044252 eV Total energy + Delta-G solvation = -3945.216954 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.67642 -42.45278 -40.89723 -39.39610 -37.96241 -37.43561 -36.20073 -33.27345 -32.23933 -30.72720 -30.25373 -26.87122 -26.48715 -26.28779 -24.32565 -23.48109 -22.80265 -21.61625 -20.78453 -20.40909 -19.31808 -18.50932 -17.52995 -17.50671 -17.17250 -16.87955 -16.78238 -16.55012 -16.18740 -15.94239 -15.58615 -15.55361 -15.28833 -15.14299 -14.88463 -14.77163 -14.53771 -14.08426 -13.84487 -13.77803 -13.60112 -13.47224 -13.10671 -12.66654 -12.50993 -12.36976 -12.19590 -11.97846 -11.93029 -11.81029 -11.28616 -11.17507 -10.91896 -10.80714 -10.33268 -10.23743 -9.32982 -8.80691 -5.01462 -0.17337 0.20103 1.35135 1.52823 1.70720 1.81729 2.02897 2.07946 2.14084 2.87199 3.28315 3.34892 3.60098 3.60985 3.63374 3.68137 3.75927 3.85250 3.88277 3.92517 4.10579 4.14320 4.24507 4.36655 4.43367 4.44810 4.55027 4.59026 4.60189 4.72643 4.73878 4.78771 4.82560 4.92976 4.99327 5.02349 5.11687 5.18143 5.26256 5.32901 5.36712 5.48996 5.49464 5.57535 5.98315 6.48041 6.61212 6.87296 7.15388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.055 4.055 3 Si 0.814 3.186 4 C -0.228 4.228 5 C 0.088 3.912 6 N -0.571 5.571 7 C 0.111 3.889 8 C -0.124 4.124 9 C -0.067 4.067 10 C -0.179 4.179 11 C 0.556 3.444 12 O -0.594 6.594 13 N -0.710 5.710 14 C 0.118 3.882 15 C -0.106 4.106 16 C -0.111 4.111 17 H 0.080 0.920 18 C -0.158 4.158 19 C 0.044 3.956 20 H 0.114 0.886 21 F -0.222 7.222 22 C -0.146 4.146 23 C -0.026 4.026 24 C -0.131 4.131 25 H 0.393 0.607 26 H 0.082 0.918 27 H -0.279 1.279 28 H -0.309 1.309 29 H 0.221 0.779 30 H 0.440 0.560 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.417 0.583 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 2.541 12.708 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.163 4.163 3 Si 0.718 3.282 4 C -0.235 4.235 5 C -0.039 4.039 6 N -0.174 5.174 7 C 0.001 3.999 8 C -0.144 4.144 9 C -0.087 4.087 10 C -0.184 4.184 11 C 0.345 3.655 12 O -0.476 6.476 13 N -0.363 5.363 14 C -0.005 4.005 15 C -0.143 4.143 16 C -0.130 4.130 17 H 0.098 0.902 18 C -0.196 4.196 19 C 0.008 3.992 20 H 0.132 0.868 21 F -0.203 7.203 22 C -0.184 4.184 23 C -0.046 4.046 24 C -0.135 4.135 25 H 0.243 0.757 26 H 0.099 0.901 27 H -0.205 1.205 28 H -0.237 1.237 29 H 0.238 0.762 30 H 0.282 0.718 31 H 0.182 0.818 32 H 0.180 0.820 33 H 0.256 0.744 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.905 2.912 11.092 12.898 hybrid contribution -0.149 -0.837 -0.546 1.011 sum 5.755 2.075 10.546 12.192 Atomic orbital electron populations 1.86489 1.18169 1.82437 1.50248 1.24780 0.84602 1.11390 0.95570 0.94036 0.76935 0.72263 0.84928 1.20855 1.11872 0.91505 0.99271 1.22244 0.97904 0.95911 0.87875 1.41776 1.53834 1.03059 1.18761 1.18638 0.99704 0.88029 0.93525 1.20094 1.04243 0.87950 1.02113 1.20894 0.95946 1.00393 0.91456 1.19578 1.09112 0.92048 0.97644 1.18574 0.77422 0.84279 0.85210 1.90769 1.47125 1.86939 1.22744 1.45744 1.63844 1.04789 1.21893 1.21388 0.99374 0.84581 0.95170 1.21694 1.03599 0.90430 0.98598 1.22480 0.99054 0.94306 0.97126 0.90202 1.23737 1.01042 0.94183 1.00636 1.22739 0.88486 0.96510 0.91470 0.86812 1.92776 1.62834 1.89176 1.75534 1.23610 1.03626 0.94713 0.96419 1.20586 0.94750 0.90987 0.98266 1.19230 1.05040 0.93633 0.95622 0.75683 0.90058 1.20530 1.23696 0.76241 0.71845 0.81811 0.81970 0.74438 0.93128 0.92703 0.88686 0.89308 0.91640 0.86092 0.85645 0.90706 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.89 12.88 -148.98 -1.92 -4.81 16 2 C -0.06 -0.17 3.06 71.23 0.22 0.05 16 3 Si 0.81 -2.47 30.76 68.60 2.11 -0.36 16 4 C -0.23 -0.45 5.58 -18.61 -0.10 -0.56 16 5 C 0.09 -0.54 10.43 82.98 0.87 0.32 16 6 N -0.57 3.86 6.05 -187.47 -1.13 2.72 16 7 C 0.11 0.00 7.27 39.19 0.28 0.28 16 8 C -0.12 0.44 10.00 22.10 0.22 0.66 16 9 C -0.07 0.11 9.46 22.30 0.21 0.32 16 10 C -0.18 -1.29 5.87 -20.10 -0.12 -1.41 16 11 C 0.56 5.80 7.76 86.73 0.67 6.47 16 12 O -0.59 -12.30 16.33 -3.99 -0.07 -12.37 16 13 N -0.71 -0.91 5.51 -466.15 -2.57 -3.47 16 14 C 0.12 0.17 5.66 86.38 0.49 0.66 16 15 C -0.11 0.64 5.16 30.60 0.16 0.80 16 16 C -0.11 0.32 3.63 -10.27 -0.04 0.28 16 17 H 0.08 0.08 8.13 -2.39 -0.02 0.06 16 18 C -0.16 0.42 7.53 31.12 0.23 0.65 16 19 C 0.04 -0.05 5.69 31.12 0.18 0.13 16 20 H 0.11 -0.57 8.14 -2.39 -0.02 -0.58 16 21 F -0.22 -1.62 17.38 44.97 0.78 -0.84 16 22 C -0.15 0.69 7.54 31.12 0.23 0.92 16 23 C -0.03 -0.30 9.64 22.74 0.22 -0.08 16 24 C -0.13 -0.87 6.34 -20.21 -0.13 -1.00 16 25 H 0.39 -1.83 8.70 -74.06 -0.64 -2.47 16 26 H 0.08 0.65 7.96 -2.39 -0.02 0.63 16 27 H -0.28 -0.19 7.11 99.48 0.71 0.51 16 28 H -0.31 -1.83 7.11 99.48 0.71 -1.13 16 29 H 0.22 -3.40 6.35 -2.91 -0.02 -3.42 16 30 H 0.44 -6.23 8.96 -92.71 -0.83 -7.06 16 31 H 0.16 -1.78 8.06 -2.91 -0.02 -1.80 16 32 H 0.16 -1.57 6.36 -2.91 -0.02 -1.59 16 33 H 0.42 -2.78 6.47 -92.71 -0.60 -3.38 16 34 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.09 -0.92 7.84 -2.39 -0.02 -0.94 16 37 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.12 -0.84 7.90 -2.38 -0.02 -0.86 16 40 H 0.13 -1.21 8.10 -2.39 -0.02 -1.23 16 41 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.10 1.73 7.64 -2.91 -0.02 1.70 16 Total: 0.00 -32.47 355.08 -0.15 -32.62 By element: Atomic # 1 Polarization: -21.04 SS G_CDS: -0.96 Total: -22.00 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 3.60 Total: 8.50 kcal Atomic # 7 Polarization: 2.95 SS G_CDS: -3.70 Total: -0.75 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.98 Total: -17.18 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.78 Total: -0.84 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 2.11 Total: -0.36 kcal Total: -32.47 -0.15 -32.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_13287722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.405 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds