Wall clock time and date at job start Sun Mar 7 2021 02:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86301 * 109.47067 * 2 1 4 4 C 1.50703 * 109.47257 * 120.00037 * 2 1 3 5 5 C 1.38579 * 120.32139 * 65.00053 * 4 2 1 6 6 C 1.38636 * 118.48186 * 180.02562 * 5 4 2 7 7 C 1.39269 * 119.06397 * 359.97438 * 6 5 4 8 8 C 1.48169 * 119.72018 * 179.97438 * 7 6 5 9 9 O 1.21506 * 120.00417 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99431 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99677 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46970 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47128 * 179.97438 * 12 11 10 14 14 H 1.09005 * 112.84987 * 43.80604 * 13 12 11 15 15 C 1.53781 * 113.61609 * 174.99788 * 13 12 11 16 16 C 1.53781 * 87.08070 * 139.98229 * 15 13 12 17 17 H 1.09002 * 113.61408 * 219.93560 * 16 15 13 18 18 F 1.39905 * 113.61459 * 89.11840 * 16 15 13 19 19 C 1.53780 * 87.17569 * 334.52628 * 16 15 13 20 20 N 1.32745 * 120.55484 * 0.25679 * 7 6 5 21 21 C 1.31494 * 121.64064 * 359.47095 * 20 7 6 22 22 H 0.96701 * 114.00413 * 299.99798 * 1 2 3 23 23 H 1.08998 * 109.47294 * 240.00216 * 2 1 3 24 24 H 1.48492 * 110.00341 * 178.68133 * 3 2 1 25 25 H 1.48503 * 110.00038 * 300.00089 * 3 2 1 26 26 H 1.07989 * 120.75909 * 0.02562 * 5 4 2 27 27 H 1.08002 * 120.46942 * 179.97438 * 6 5 4 28 28 H 0.97000 * 120.00624 * 359.97438 * 10 8 7 29 29 H 1.09000 * 109.47304 * 59.99954 * 11 10 8 30 30 H 1.08995 * 109.46811 * 299.99448 * 11 10 8 31 31 H 1.09002 * 109.47755 * 59.99959 * 12 11 10 32 32 H 1.09004 * 109.47220 * 299.99372 * 12 11 10 33 33 H 1.09001 * 113.61537 * 25.43683 * 15 13 12 34 34 H 1.09000 * 113.69133 * 254.54111 * 15 13 12 35 35 H 1.09000 * 113.61662 * 140.01589 * 19 16 15 36 36 H 1.08998 * 113.61573 * 270.93128 * 19 16 15 37 37 H 1.07999 * 119.54771 * 180.26782 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6879 -2.0634 1.4056 6 6 2.1671 -2.6784 2.5519 7 6 2.8730 -1.9195 3.4822 8 6 3.3911 -2.5619 4.7128 9 8 3.1992 -3.7459 4.9071 10 7 4.0745 -1.8326 5.6170 11 6 4.5874 -2.4678 6.8335 12 6 5.3194 -1.4267 7.6827 13 6 5.8545 -2.0900 8.9534 14 1 6.3185 -3.0577 8.7626 15 6 6.7137 -1.1553 9.8212 16 6 6.0238 -1.7845 11.0431 17 1 5.7807 -1.0655 11.8255 18 9 6.6779 -2.9200 11.5330 19 6 4.8417 -2.1073 10.1141 20 7 3.0805 -0.6243 3.2784 21 6 2.6418 -0.0171 2.1978 22 1 -0.3934 0.4417 0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 3.5345 1.7704 0.0321 25 1 1.5614 2.4679 -1.2085 26 1 1.1376 -2.6258 0.6660 27 1 1.9955 -3.7312 2.7212 28 1 4.2274 -0.8873 5.4621 29 1 5.2782 -3.2663 6.5629 30 1 3.7569 -2.8836 7.4040 31 1 4.6289 -0.6279 7.9534 32 1 6.1500 -1.0113 7.1119 33 1 6.4829 -0.0987 9.6854 34 1 7.7818 -1.3657 9.7663 35 1 4.3992 -3.0869 10.2947 36 1 4.1000 -1.3105 10.0582 37 1 2.8336 1.0373 2.0643 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_13287726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:33:50 Heat of formation + Delta-G solvation = -58.528597 kcal Electronic energy + Delta-G solvation = -20893.691021 eV Core-core repulsion = 17359.618332 eV Total energy + Delta-G solvation = -3534.072689 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.65869 -41.89181 -40.38822 -39.32084 -37.86814 -36.23817 -33.91495 -33.02751 -31.71098 -28.01130 -26.82012 -25.87682 -25.01443 -23.71690 -22.79227 -21.89429 -20.44294 -19.32298 -18.59570 -17.80068 -17.26712 -16.91968 -16.81303 -16.61389 -16.45285 -16.22885 -16.04452 -15.89298 -15.52552 -15.13053 -14.75085 -14.37090 -14.30947 -14.24519 -13.78726 -13.56487 -13.46448 -13.09145 -12.56006 -12.53527 -12.18746 -11.98502 -11.80710 -11.55373 -11.18376 -11.07352 -11.00049 -10.68673 -10.57151 -10.39182 -10.11178 -5.00042 -0.61756 0.06293 1.25441 1.51507 1.65278 1.93998 1.99040 2.64806 2.93212 3.29816 3.36260 3.43020 3.51737 3.61892 3.64272 3.74176 3.78582 3.87987 3.93400 4.09669 4.13725 4.24850 4.40634 4.44772 4.56959 4.59742 4.71136 4.75513 4.83901 4.86810 4.94163 4.97723 5.03955 5.12390 5.18635 5.30847 5.37371 5.51022 6.25052 6.59509 6.72118 7.01976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.070 4.070 3 Si 0.776 3.224 4 C -0.143 4.143 5 C -0.054 4.054 6 C -0.117 4.117 7 C 0.064 3.936 8 C 0.565 3.435 9 O -0.571 6.571 10 N -0.698 5.698 11 C 0.117 3.883 12 C -0.107 4.107 13 C -0.109 4.109 14 H 0.083 0.917 15 C -0.149 4.149 16 C 0.044 3.956 17 H 0.113 0.887 18 F -0.222 7.222 19 C -0.157 4.157 20 N -0.458 5.458 21 C 0.104 3.896 22 H 0.398 0.602 23 H 0.118 0.882 24 H -0.279 1.279 25 H -0.297 1.297 26 H 0.159 0.841 27 H 0.147 0.853 28 H 0.421 0.579 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 7.517 0.125 7.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.181 4.181 3 Si 0.681 3.319 4 C -0.145 4.145 5 C -0.080 4.080 6 C -0.138 4.138 7 C -0.073 4.073 8 C 0.350 3.650 9 O -0.450 6.450 10 N -0.350 5.350 11 C -0.007 4.007 12 C -0.145 4.145 13 C -0.128 4.128 14 H 0.101 0.899 15 C -0.186 4.186 16 C 0.008 3.992 17 H 0.131 0.869 18 F -0.203 7.203 19 C -0.194 4.194 20 N -0.169 5.169 21 C -0.056 4.056 22 H 0.248 0.752 23 H 0.135 0.865 24 H -0.205 1.205 25 H -0.225 1.225 26 H 0.177 0.823 27 H 0.165 0.835 28 H 0.259 0.741 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.317 7.368 0.028 7.375 hybrid contribution -0.179 -1.276 -0.881 1.561 sum -0.496 6.092 -0.853 6.171 Atomic orbital electron populations 1.86514 1.16667 1.82135 1.50581 1.25188 0.85621 1.11084 0.96172 0.93798 0.78092 0.74399 0.85563 1.21782 0.98780 0.95555 0.98423 1.21735 0.95595 0.94267 0.96365 1.22277 0.95712 1.02260 0.93551 1.21053 0.99624 0.90934 0.95725 1.18137 0.78229 0.85611 0.82982 1.90792 1.59695 1.16559 1.77917 1.45811 1.54226 1.14379 1.20533 1.21486 0.98187 0.96514 0.84477 1.21690 1.00610 0.97403 0.94798 1.22521 0.97099 0.99543 0.93604 0.89907 1.23613 1.00115 1.01369 0.93507 1.22730 0.94486 0.84902 0.97051 0.86933 1.92776 1.83071 1.54767 1.89670 1.23773 0.96760 1.04012 0.94875 1.67499 1.18460 1.08857 1.22074 1.23042 0.93520 1.00827 0.88188 0.75205 0.86465 1.20546 1.22470 0.82292 0.83531 0.74061 0.92461 0.91846 0.88934 0.89759 0.85886 0.90773 0.91280 0.86149 0.79304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.34 12.84 -148.98 -1.91 0.43 16 2 C -0.07 0.38 2.82 71.24 0.20 0.58 16 3 Si 0.78 -5.31 29.83 68.60 2.05 -3.27 16 4 C -0.14 0.52 5.37 -19.69 -0.11 0.41 16 5 C -0.05 0.08 9.83 22.45 0.22 0.30 16 6 C -0.12 -0.29 9.63 22.61 0.22 -0.07 16 7 C 0.06 0.26 6.75 41.89 0.28 0.54 16 8 C 0.57 4.00 7.81 86.88 0.68 4.68 16 9 O -0.57 -8.14 16.32 -3.73 -0.06 -8.20 16 10 N -0.70 -0.70 5.55 -465.66 -2.58 -3.28 16 11 C 0.12 -0.03 5.66 86.38 0.49 0.46 16 12 C -0.11 0.67 5.17 30.59 0.16 0.83 16 13 C -0.11 0.41 3.63 -10.17 -0.04 0.38 16 14 H 0.08 -0.04 8.13 -2.38 -0.02 -0.06 16 15 C -0.15 0.73 7.54 31.12 0.23 0.97 16 16 C 0.04 -0.08 5.68 31.12 0.18 0.10 16 17 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 18 F -0.22 -1.42 17.38 44.97 0.78 -0.64 16 19 C -0.16 0.59 7.55 31.21 0.24 0.83 16 20 N -0.46 -0.26 9.54 -184.91 -1.76 -2.03 16 21 C 0.10 -0.38 9.84 84.83 0.83 0.45 16 22 H 0.40 -4.86 8.70 -74.06 -0.64 -5.50 16 23 H 0.12 -0.55 7.96 -2.39 -0.02 -0.57 16 24 H -0.28 0.63 7.11 99.48 0.71 1.34 16 25 H -0.30 -0.41 7.11 99.48 0.71 0.30 16 26 H 0.16 -0.68 8.06 -2.92 -0.02 -0.71 16 27 H 0.15 0.44 7.64 -2.91 -0.02 0.42 16 28 H 0.42 -1.33 7.80 -92.71 -0.72 -2.06 16 29 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.09 -0.84 7.85 -2.39 -0.02 -0.86 16 32 H 0.08 -0.62 8.14 -2.38 -0.02 -0.64 16 33 H 0.12 -1.15 8.10 -2.39 -0.02 -1.17 16 34 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.12 -0.95 7.90 -2.39 -0.02 -0.96 16 37 H 0.19 -1.85 4.92 -2.91 -0.01 -1.86 16 Total: 0.00 -19.48 318.86 -0.13 -19.61 By element: Atomic # 1 Polarization: -12.84 SS G_CDS: -0.23 Total: -13.06 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 3.59 Total: 10.44 kcal Atomic # 7 Polarization: -0.96 SS G_CDS: -4.35 Total: -5.31 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -1.97 Total: -7.77 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.78 Total: -0.64 kcal Atomic # 14 Polarization: -5.31 SS G_CDS: 2.05 Total: -3.27 kcal Total: -19.48 -0.13 -19.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_13287726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.919 kcal (2) G-P(sol) polarization free energy of solvation -19.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds