Wall clock time and date at job start Sun Mar 7 2021 02:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86300 * 109.47370 * 2 1 4 4 C 1.50703 * 109.47021 * 120.00007 * 2 1 3 5 5 C 1.34845 * 125.90299 * 218.20106 * 4 2 1 6 6 C 1.40937 * 107.47196 * 179.97438 * 5 4 2 7 7 C 1.34849 * 107.46379 * 359.75475 * 6 5 4 8 8 N 1.36565 * 108.20504 * 0.39237 * 7 6 5 9 9 C 1.40191 * 125.67227 * 179.86568 * 8 7 6 10 10 C 1.38835 * 120.06570 * 56.07550 * 9 8 7 11 11 C 1.38117 * 119.93385 * 179.97438 * 10 9 8 12 12 C 1.38276 * 120.06841 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.93553 * 179.97438 * 12 11 10 14 14 C 1.50709 * 109.47006 * 89.99872 * 13 12 11 15 15 O 1.21276 * 119.99985 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99650 * 180.27664 * 14 13 12 17 17 C 1.46499 * 119.99650 * 179.72495 * 16 14 13 18 18 C 1.53008 * 109.47076 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47105 * 180.02562 * 18 17 16 20 20 H 1.09000 * 112.85070 * 316.19214 * 19 18 17 21 21 C 1.53774 * 113.61428 * 87.50619 * 19 18 17 22 22 C 1.53782 * 87.08282 * 139.98139 * 21 19 18 23 23 H 1.08998 * 113.68982 * 220.00790 * 22 21 19 24 24 F 1.39901 * 113.61603 * 89.11149 * 22 21 19 25 25 C 1.53785 * 113.61111 * 185.00417 * 19 18 17 26 26 C 1.38280 * 120.13088 * 0.27182 * 12 11 10 27 27 C 1.38129 * 120.06131 * 359.45047 * 26 12 11 28 28 H 0.96695 * 113.99433 * 305.22471 * 1 2 3 29 29 H 1.09004 * 109.46892 * 239.99773 * 2 1 3 30 30 H 1.48504 * 109.99834 * 299.99844 * 3 2 1 31 31 H 1.48498 * 110.00021 * 61.32066 * 3 2 1 32 32 H 1.08007 * 126.26301 * 359.97438 * 5 4 2 33 33 H 1.08002 * 126.26772 * 180.02562 * 6 5 4 34 34 H 1.08004 * 125.89817 * 180.24354 * 7 6 5 35 35 H 1.07995 * 120.03049 * 0.02562 * 10 9 8 36 36 H 1.08007 * 119.96770 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.46994 * 329.99967 * 13 12 11 38 38 H 1.08997 * 109.47316 * 209.99916 * 13 12 11 39 39 H 0.97001 * 120.00545 * 359.72319 * 16 14 13 40 40 H 1.08994 * 109.47100 * 299.99532 * 17 16 14 41 41 H 1.09003 * 109.47169 * 60.00449 * 17 16 14 42 42 H 1.09000 * 109.47244 * 300.00214 * 18 17 16 43 43 H 1.09000 * 109.46994 * 59.99718 * 18 17 16 44 44 H 1.09002 * 113.61241 * 254.52859 * 21 19 18 45 45 H 1.08996 * 113.61826 * 25.42809 * 21 19 18 46 46 H 1.08997 * 113.61627 * 334.56073 * 25 19 18 47 47 H 1.08997 * 113.61446 * 105.38759 * 25 19 18 48 48 H 1.08003 * 119.96772 * 179.70686 * 26 12 11 49 49 H 1.07998 * 120.02445 * 180.27239 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 3.0042 -0.3552 1.9661 6 6 3.1194 -1.2821 3.0215 7 6 2.1094 -2.1667 2.8952 8 7 1.3782 -1.8250 1.7936 9 6 0.2447 -2.5021 1.3224 10 6 -0.8463 -2.6975 2.1585 11 6 -1.9619 -3.3645 1.6913 12 6 -1.9926 -3.8381 0.3925 13 6 -3.2111 -4.5659 -0.1139 14 6 -4.1725 -3.5756 -0.7190 15 8 -3.8952 -2.3951 -0.7377 16 7 -5.3426 -4.0013 -1.2349 17 6 -6.2797 -3.0378 -1.8177 18 6 -7.5191 -3.7763 -2.3275 19 6 -8.4976 -2.7702 -2.9368 20 1 -8.6127 -1.8715 -2.3308 21 6 -8.2387 -2.4829 -4.4251 22 6 -9.7652 -2.4889 -4.6109 23 1 -10.0928 -2.9782 -5.5282 24 9 -10.3577 -1.2357 -4.4221 25 6 -9.8337 -3.3958 -3.3708 26 6 -0.9051 -3.6504 -0.4406 27 6 0.2111 -2.9790 0.0191 28 1 -0.3932 0.5095 0.7216 29 1 1.7924 -0.5139 -0.8900 30 1 1.5616 2.4678 -1.2086 31 1 1.5881 2.4585 1.2242 32 1 3.6560 0.4859 1.7805 33 1 3.8753 -1.2813 3.7929 34 1 1.9141 -3.0026 3.5506 35 1 -0.8230 -2.3275 3.1728 36 1 -2.8108 -3.5172 2.3414 37 1 -3.6956 -5.0832 0.7142 38 1 -2.9126 -5.2914 -0.8706 39 1 -5.5642 -4.9455 -1.2204 40 1 -6.5747 -2.3132 -1.0589 41 1 -5.7990 -2.5198 -2.6476 42 1 -7.2238 -4.5007 -3.0865 43 1 -7.9999 -4.2947 -1.4980 44 1 -7.7803 -1.5112 -4.6089 45 1 -7.7323 -3.2961 -4.9451 46 1 -9.7634 -4.4585 -3.6026 47 1 -10.6626 -3.1622 -2.7027 48 1 -0.9301 -4.0255 -1.4531 49 1 1.0584 -2.8289 -0.6335 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_13287746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:01 Heat of formation + Delta-G solvation = -10.953957 kcal Electronic energy + Delta-G solvation = -30887.650238 eV Core-core repulsion = 26504.349262 eV Total energy + Delta-G solvation = -4383.300976 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.70200 -42.68463 -41.06183 -39.79855 -39.28721 -37.88910 -36.10127 -34.87040 -32.42491 -32.17978 -31.28105 -31.04521 -28.00118 -26.85573 -26.08128 -25.71617 -23.99516 -23.39930 -22.75996 -21.54430 -21.40397 -20.64022 -20.43789 -19.32807 -18.14554 -17.64873 -17.38484 -17.16356 -17.15437 -16.77992 -16.58649 -16.30031 -16.03214 -15.91934 -15.82553 -15.46970 -15.30842 -14.97819 -14.64703 -14.59622 -14.49817 -14.38764 -14.17969 -13.91781 -13.83983 -13.51850 -13.37841 -13.21017 -13.15377 -12.94458 -12.65846 -12.50863 -12.36676 -12.13583 -11.99034 -11.90496 -11.82249 -11.25424 -11.17770 -10.97760 -10.88723 -10.24332 -10.13587 -10.03206 -9.24675 -9.08671 -4.95184 -0.01618 0.30988 1.04124 1.35321 1.62401 1.62469 1.80644 1.99297 2.09563 2.14913 2.69350 3.22935 3.26081 3.32900 3.58840 3.59423 3.66511 3.68426 3.72936 3.84994 3.86165 3.96408 4.12715 4.14593 4.20942 4.26249 4.28966 4.42717 4.44057 4.51454 4.51701 4.57451 4.60772 4.63034 4.70821 4.73333 4.80344 4.82768 4.91371 4.92970 5.00139 5.11623 5.16666 5.18098 5.19184 5.26362 5.34945 5.42831 5.46545 5.47009 5.76551 5.93074 6.18044 6.33508 6.49163 6.54817 7.26536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.066 4.066 3 Si 0.807 3.193 4 C -0.027 4.027 5 C -0.193 4.193 6 C -0.200 4.200 7 C -0.019 4.019 8 N -0.399 5.399 9 C 0.117 3.883 10 C -0.126 4.126 11 C -0.098 4.098 12 C -0.068 4.068 13 C -0.096 4.096 14 C 0.508 3.492 15 O -0.583 6.583 16 N -0.719 5.719 17 C 0.120 3.880 18 C -0.106 4.106 19 C -0.111 4.111 20 H 0.078 0.922 21 C -0.158 4.158 22 C 0.043 3.957 23 H 0.114 0.886 24 F -0.222 7.222 25 C -0.147 4.147 26 C -0.098 4.098 27 C -0.108 4.108 28 H 0.376 0.624 29 H 0.119 0.881 30 H -0.297 1.297 31 H -0.289 1.289 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.177 0.823 35 H 0.130 0.870 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.419 0.581 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.074 0.926 48 H 0.141 0.859 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 -8.672 -0.361 8.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.174 4.174 3 Si 0.710 3.290 4 C -0.137 4.137 5 C -0.217 4.217 6 C -0.224 4.224 7 C -0.147 4.147 8 N -0.073 5.073 9 C 0.027 3.973 10 C -0.145 4.145 11 C -0.116 4.116 12 C -0.068 4.068 13 C -0.136 4.136 14 C 0.295 3.705 15 O -0.462 6.462 16 N -0.372 5.372 17 C -0.004 4.004 18 C -0.143 4.143 19 C -0.130 4.130 20 H 0.097 0.903 21 C -0.195 4.195 22 C 0.007 3.993 23 H 0.131 0.869 24 F -0.203 7.203 25 C -0.185 4.185 26 C -0.117 4.117 27 C -0.127 4.127 28 H 0.224 0.776 29 H 0.136 0.864 30 H -0.224 1.224 31 H -0.216 1.216 32 H 0.186 0.814 33 H 0.176 0.824 34 H 0.194 0.806 35 H 0.148 0.852 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.257 0.743 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.139 0.861 46 H 0.143 0.857 47 H 0.092 0.908 48 H 0.158 0.842 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.704 -7.515 -1.008 7.615 hybrid contribution -1.244 0.067 0.584 1.376 sum -1.949 -7.448 -0.424 7.711 Atomic orbital electron populations 1.86650 1.18457 1.74969 1.54622 1.25087 0.83439 1.12419 0.96436 0.93557 0.89749 0.69520 0.76209 1.21243 0.99443 0.92219 1.00768 1.21043 0.99440 1.03587 0.97613 1.21231 1.01391 0.97606 1.02146 1.22372 0.95767 1.03886 0.92628 1.41575 1.21433 1.21569 1.22677 1.17756 0.86975 0.98092 0.94474 1.21146 0.92380 1.00773 1.00242 1.21095 0.97607 0.97007 0.95914 1.19598 0.94976 0.98536 0.93729 1.20766 0.91857 0.96862 1.04076 1.21085 0.82486 0.89387 0.77501 1.90772 1.76806 1.20184 1.58450 1.45906 1.18198 1.12234 1.60857 1.21283 0.89969 0.92048 0.97097 1.21679 0.93036 0.97640 1.01959 1.22479 0.95741 0.99023 0.95745 0.90339 1.23727 0.94800 1.03953 0.97042 1.22754 0.94763 0.80313 1.01457 0.86853 1.92775 1.85592 1.45181 1.96791 1.23613 0.97629 1.01090 0.96125 1.21081 0.92397 0.98175 1.00042 1.21000 0.99446 0.97863 0.94418 0.77581 0.86379 1.22430 1.21596 0.81386 0.82411 0.80582 0.85174 0.83787 0.84679 0.84801 0.74293 0.93508 0.93140 0.88834 0.89448 0.91698 0.86076 0.85697 0.90770 0.84168 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -5.07 11.01 -148.98 -1.64 -6.71 16 2 C -0.07 -0.31 2.49 71.24 0.18 -0.14 16 3 Si 0.81 1.22 30.80 68.60 2.11 3.34 16 4 C -0.03 -0.17 6.12 41.04 0.25 0.08 16 5 C -0.19 -0.75 9.39 22.15 0.21 -0.55 16 6 C -0.20 -0.80 10.86 22.15 0.24 -0.56 16 7 C -0.02 -0.10 11.21 83.18 0.93 0.84 16 8 N -0.40 -2.90 2.84 -333.41 -0.95 -3.84 16 9 C 0.12 0.85 4.66 38.09 0.18 1.03 16 10 C -0.13 -0.67 9.77 22.38 0.22 -0.45 16 11 C -0.10 -0.28 9.69 22.25 0.22 -0.06 16 12 C -0.07 -0.13 4.38 -19.85 -0.09 -0.22 16 13 C -0.10 0.49 5.83 29.10 0.17 0.66 16 14 C 0.51 0.95 7.82 87.66 0.69 1.64 16 15 O -0.58 -7.94 16.03 -3.02 -0.05 -7.99 16 16 N -0.72 3.07 5.56 -463.05 -2.57 0.50 16 17 C 0.12 -0.19 5.67 86.38 0.49 0.30 16 18 C -0.11 0.82 5.17 30.60 0.16 0.98 16 19 C -0.11 0.43 3.63 -10.27 -0.04 0.40 16 20 H 0.08 0.01 8.13 -2.39 -0.02 -0.01 16 21 C -0.16 0.55 7.53 31.12 0.23 0.78 16 22 C 0.04 -0.07 5.69 31.12 0.18 0.11 16 23 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 24 F -0.22 -1.51 17.38 44.97 0.78 -0.73 16 25 C -0.15 0.78 7.54 31.12 0.23 1.01 16 26 C -0.10 -0.39 9.69 22.25 0.22 -0.17 16 27 C -0.11 -0.73 8.62 22.38 0.19 -0.54 16 28 H 0.38 2.37 8.60 -74.06 -0.64 1.74 16 29 H 0.12 0.39 7.96 -2.38 -0.02 0.37 16 30 H -0.30 -2.40 7.11 99.48 0.71 -1.70 16 31 H -0.29 -1.97 7.11 99.48 0.71 -1.26 16 32 H 0.17 -0.29 6.59 -2.91 -0.02 -0.31 16 33 H 0.16 -0.02 8.06 -2.91 -0.02 -0.04 16 34 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 35 H 0.13 0.46 8.06 -2.91 -0.02 0.43 16 36 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 37 H 0.14 -1.47 8.08 -2.39 -0.02 -1.49 16 38 H 0.13 -1.42 8.08 -2.39 -0.02 -1.44 16 39 H 0.42 -5.01 8.47 -92.71 -0.79 -5.79 16 40 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.09 -1.04 7.84 -2.39 -0.02 -1.06 16 43 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H 0.06 0.00 8.14 -2.39 -0.02 -0.01 16 45 H 0.12 -0.95 7.89 -2.39 -0.02 -0.97 16 46 H 0.12 -1.27 8.10 -2.39 -0.02 -1.29 16 47 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 48 H 0.14 0.02 8.06 -2.91 -0.02 -0.01 16 49 H 0.12 0.78 8.06 -2.91 -0.02 0.75 16 Total: 0.00 -26.18 410.54 2.12 -24.05 By element: Atomic # 1 Polarization: -13.32 SS G_CDS: -0.42 Total: -13.74 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 4.85 Total: 5.13 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -3.52 Total: -3.34 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.69 Total: -14.70 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.78 Total: -0.73 kcal Atomic # 14 Polarization: 1.22 SS G_CDS: 2.11 Total: 3.34 kcal Total: -26.18 2.12 -24.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_13287746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.099 kcal (2) G-P(sol) polarization free energy of solvation -26.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds