Wall clock time and date at job start Sun Mar 7 2021 02:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.47091 * 2 1 4 4 C 1.50702 * 109.46756 * 240.00305 * 2 1 3 5 5 C 1.33740 * 125.11869 * 300.00258 * 4 2 1 6 6 C 1.37806 * 115.08243 * 180.02562 * 5 4 2 7 7 C 1.34982 * 114.69670 * 359.97438 * 6 5 4 8 8 C 1.47565 * 125.27143 * 180.02562 * 7 6 5 9 9 C 1.39827 * 119.99516 * 180.02562 * 8 7 6 10 10 C 1.36566 * 119.99819 * 179.97438 * 9 8 7 11 11 C 1.39831 * 119.99730 * 0.02562 * 10 9 8 12 12 C 1.47562 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21594 * 119.99873 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00001 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99801 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46888 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.46955 * 180.02562 * 16 15 14 18 18 H 1.08994 * 112.91116 * 43.75034 * 17 16 15 19 19 C 1.53787 * 113.61251 * 175.00343 * 17 16 15 20 20 C 1.53779 * 87.07963 * 139.97890 * 19 17 16 21 21 H 1.09007 * 113.61383 * 220.01369 * 20 19 17 22 22 F 1.39897 * 113.61427 * 89.11723 * 20 19 17 23 23 C 1.53779 * 87.08402 * 334.56577 * 20 19 17 24 24 C 1.39833 * 120.00235 * 0.27082 * 11 10 9 25 25 C 1.36569 * 119.99205 * 359.44877 * 24 11 10 26 26 S 1.75865 * 125.12054 * 120.32773 * 4 2 1 27 27 H 0.96704 * 113.99648 * 299.99950 * 1 2 3 28 28 H 1.08993 * 109.47142 * 120.00675 * 2 1 3 29 29 H 1.48502 * 110.00231 * 300.00001 * 3 2 1 30 30 H 1.48497 * 109.99888 * 61.32404 * 3 2 1 31 31 H 1.08001 * 122.46197 * 0.03212 * 5 4 2 32 32 H 1.07997 * 122.65024 * 180.02562 * 6 5 4 33 33 H 1.07997 * 119.99839 * 0.02562 * 9 8 7 34 34 H 1.08001 * 119.99887 * 180.02562 * 10 9 8 35 35 H 0.97000 * 119.99609 * 0.02562 * 14 12 11 36 36 H 1.09004 * 109.46928 * 60.00957 * 15 14 12 37 37 H 1.08994 * 109.47493 * 300.00321 * 15 14 12 38 38 H 1.08998 * 109.46831 * 60.00159 * 16 15 14 39 39 H 1.09003 * 109.46913 * 300.00244 * 16 15 14 40 40 H 1.08997 * 113.61028 * 254.52850 * 19 17 16 41 41 H 1.09000 * 113.61529 * 25.42990 * 19 17 16 42 42 H 1.09002 * 113.61557 * 270.88569 * 23 20 19 43 43 H 1.09004 * 113.61501 * 139.97990 * 23 20 19 44 44 H 1.07993 * 120.00291 * 179.70339 * 24 11 10 45 45 H 1.08003 * 119.99400 * 180.30010 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6720 -1.9846 -1.5430 6 6 2.2379 -2.4243 -2.7201 7 6 2.9673 -1.4971 -3.3760 8 6 3.6725 -1.7153 -4.6537 9 6 4.3993 -0.6733 -5.2379 10 6 5.0524 -0.8753 -6.4201 11 6 4.9938 -2.1240 -7.0467 12 6 5.6999 -2.3424 -8.3238 13 8 6.3323 -1.4364 -8.8316 14 7 5.6439 -3.5461 -8.9275 15 6 6.3446 -3.7628 -10.1957 16 6 6.1204 -5.2025 -10.6626 17 6 6.8526 -5.4290 -11.9868 18 1 7.8575 -5.0069 -11.9936 19 6 6.7920 -6.8833 -12.4833 20 6 6.5990 -6.3097 -13.8970 21 1 5.8727 -6.8593 -14.4958 22 9 7.7998 -6.0769 -14.5760 23 6 6.0188 -5.0548 -13.2236 24 6 4.2619 -3.1642 -6.4656 25 6 3.6136 -2.9637 -5.2804 26 16 2.9533 0.0091 -2.4678 27 1 -0.3933 0.4417 0.7651 28 1 1.7924 -0.5139 0.8899 29 1 1.5615 2.4679 -1.2085 30 1 1.5880 2.4585 1.2243 31 1 1.0636 -2.6223 -0.9188 32 1 2.1074 -3.4309 -3.0890 33 1 4.4448 0.2910 -4.7537 34 1 5.6140 -0.0705 -6.8711 35 1 5.1391 -4.2687 -8.5225 36 1 7.4113 -3.5878 -10.0560 37 1 5.9585 -3.0735 -10.9465 38 1 5.0537 -5.3772 -10.8024 39 1 6.5063 -5.8922 -9.9118 40 1 7.7280 -7.4272 -12.3568 41 1 5.9274 -7.4350 -12.1142 42 1 4.9429 -5.1067 -13.0568 43 1 6.3307 -4.1227 -13.6947 44 1 4.2128 -4.1271 -6.9519 45 1 3.0523 -3.7686 -4.8292 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14412250_13308390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:12 Heat of formation + Delta-G solvation = -35.884922 kcal Electronic energy + Delta-G solvation = -27493.207064 eV Core-core repulsion = 23290.714636 eV Total energy + Delta-G solvation = -4202.492428 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.61112 -41.31257 -39.98517 -39.44383 -38.91956 -37.54857 -36.12478 -33.72200 -32.50365 -31.70408 -30.46080 -27.46418 -26.98320 -25.96821 -24.50849 -23.90481 -23.36187 -22.84704 -21.60123 -20.55026 -20.10574 -19.13746 -18.73015 -18.30288 -17.41019 -17.13759 -16.94563 -16.80256 -16.57370 -16.26788 -16.01091 -15.85044 -15.56308 -15.54254 -15.33854 -14.95372 -14.72458 -14.51498 -14.35884 -14.16987 -14.06473 -13.80856 -13.65719 -13.38813 -13.30503 -13.17920 -13.04833 -12.72682 -12.63698 -12.38014 -12.17219 -12.13447 -11.92197 -11.60165 -11.32664 -11.23132 -10.87779 -10.82154 -10.53146 -10.20902 -10.12096 -9.53013 -9.01136 -5.14902 -0.87212 0.25662 0.32439 0.38272 0.74325 1.14319 1.49866 1.59941 1.83487 2.03529 2.08206 2.85794 3.15020 3.18959 3.19552 3.41665 3.45862 3.55188 3.62504 3.66746 3.73062 3.74811 3.79840 3.98338 4.14402 4.15684 4.24549 4.28299 4.30839 4.41411 4.45047 4.50941 4.51861 4.60039 4.64614 4.68749 4.79328 4.87679 4.89485 4.96635 4.98983 5.02030 5.09099 5.22132 5.27320 5.29852 5.34987 5.36363 5.46232 5.71693 6.28793 6.43030 7.19216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.034 4.034 3 Si 0.645 3.355 4 C -0.173 4.173 5 C -0.105 4.105 6 C -0.117 4.117 7 C -0.151 4.151 8 C 0.015 3.985 9 C -0.120 4.120 10 C -0.049 4.049 11 C -0.137 4.137 12 C 0.558 3.442 13 O -0.533 6.533 14 N -0.728 5.728 15 C 0.119 3.881 16 C -0.121 4.121 17 C -0.107 4.107 18 H 0.099 0.901 19 C -0.157 4.157 20 C 0.061 3.939 21 H 0.097 0.903 22 F -0.197 7.197 23 C -0.160 4.160 24 C -0.078 4.078 25 C -0.110 4.110 26 S 0.141 5.859 27 H 0.383 0.617 28 H 0.087 0.913 29 H -0.235 1.235 30 H -0.238 1.238 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.130 0.870 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 -4.081 3.806 5.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.146 4.146 3 Si 0.543 3.457 4 C -0.290 4.290 5 C -0.135 4.135 6 C -0.148 4.148 7 C -0.268 4.268 8 C 0.013 3.987 9 C -0.139 4.139 10 C -0.068 4.068 11 C -0.140 4.140 12 C 0.346 3.654 13 O -0.411 6.411 14 N -0.381 5.381 15 C -0.005 4.005 16 C -0.159 4.159 17 C -0.126 4.126 18 H 0.118 0.882 19 C -0.195 4.195 20 C 0.025 3.975 21 H 0.114 0.886 22 F -0.178 7.178 23 C -0.198 4.198 24 C -0.097 4.097 25 C -0.130 4.130 26 S 0.409 5.591 27 H 0.231 0.769 28 H 0.105 0.895 29 H -0.159 1.159 30 H -0.161 1.161 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.147 0.853 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.744 -1.416 2.674 3.116 hybrid contribution -1.952 -1.948 0.956 2.919 sum -2.696 -3.364 3.629 5.636 Atomic orbital electron populations 1.86605 1.17350 1.80062 1.49980 1.24010 0.84523 1.09992 0.96108 0.95280 0.91845 0.75392 0.83149 1.23824 1.06356 0.97926 1.00885 1.19972 1.01037 0.94999 0.97518 1.20359 0.98668 1.00511 0.95268 1.23071 1.06248 0.98076 0.99385 1.18290 0.95152 0.94085 0.91217 1.20983 0.97992 0.98756 0.96173 1.20949 0.95991 0.96258 0.93554 1.20009 1.02087 0.95632 0.96321 1.18218 0.80494 0.82371 0.84344 1.90816 1.42257 1.42316 1.65664 1.45919 1.53977 1.13504 1.24674 1.21408 0.97574 0.96713 0.84772 1.21778 1.01192 0.95701 0.97201 1.22514 1.00223 0.96498 0.93365 0.88230 1.23615 1.04105 0.96978 0.94805 1.22379 0.83595 0.98785 0.92771 0.88562 1.92829 1.47961 1.95531 1.81437 1.23696 1.00952 0.98521 0.96623 1.20949 0.95444 0.98125 0.95203 1.20866 1.00321 0.96382 0.95439 1.84108 1.48087 1.12637 1.14292 0.76852 0.89494 1.15909 1.16097 0.83771 0.83716 0.85113 0.84057 0.76463 0.91094 0.91066 0.90796 0.90691 0.89965 0.88169 0.88170 0.89940 0.85262 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.32 12.83 -35.23 -0.45 -0.77 16 2 C -0.03 0.02 2.95 36.01 0.11 0.12 16 3 Si 0.64 -0.54 30.96 -169.99 -5.26 -5.80 16 4 C -0.17 -0.17 5.76 -35.89 -0.21 -0.37 16 5 C -0.11 -0.08 10.00 -41.32 -0.41 -0.49 16 6 C -0.12 -0.02 9.64 -40.90 -0.39 -0.42 16 7 C -0.15 -0.13 6.37 -36.94 -0.24 -0.37 16 8 C 0.01 0.01 5.88 -104.91 -0.62 -0.61 16 9 C -0.12 -0.10 9.54 -39.59 -0.38 -0.48 16 10 C -0.05 -0.07 9.53 -39.59 -0.38 -0.45 16 11 C -0.14 -0.16 5.88 -104.90 -0.62 -0.78 16 12 C 0.56 1.43 7.76 -12.46 -0.10 1.33 16 13 O -0.53 -3.46 16.33 5.28 0.09 -3.38 16 14 N -0.73 0.48 5.50 -61.34 -0.34 0.14 16 15 C 0.12 -0.09 5.67 -4.04 -0.02 -0.12 16 16 C -0.12 0.38 5.16 -26.73 -0.14 0.25 16 17 C -0.11 0.22 3.63 -89.80 -0.33 -0.10 16 18 H 0.10 -0.11 8.13 -51.93 -0.42 -0.53 16 19 C -0.16 0.36 7.54 -25.92 -0.20 0.17 16 20 C 0.06 -0.06 5.69 -25.92 -0.15 -0.20 16 21 H 0.10 -0.23 8.14 -51.93 -0.42 -0.65 16 22 F -0.20 -0.50 17.38 2.25 0.04 -0.47 16 23 C -0.16 0.30 7.53 -25.92 -0.20 0.11 16 24 C -0.08 0.09 9.48 -39.59 -0.38 -0.28 16 25 C -0.11 0.09 9.48 -39.59 -0.38 -0.28 16 26 S 0.14 0.09 19.46 -107.50 -2.09 -2.00 16 27 H 0.38 -1.36 8.74 45.56 0.40 -0.96 16 28 H 0.09 -0.21 7.96 -51.93 -0.41 -0.62 16 29 H -0.24 -0.54 7.11 56.52 0.40 -0.13 16 30 H -0.24 -0.10 7.11 56.52 0.40 0.30 16 31 H 0.14 -0.05 8.06 -52.49 -0.42 -0.47 16 32 H 0.15 -0.29 6.88 -52.49 -0.36 -0.65 16 33 H 0.13 -0.05 7.26 -52.49 -0.38 -0.43 16 34 H 0.14 0.23 7.64 -52.49 -0.40 -0.17 16 35 H 0.40 -1.41 6.48 -40.82 -0.26 -1.68 16 36 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 37 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.07 -0.30 7.84 -51.93 -0.41 -0.70 16 39 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 40 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 41 H 0.10 -0.38 8.10 -51.93 -0.42 -0.80 16 42 H 0.10 -0.33 7.90 -51.93 -0.41 -0.74 16 43 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 44 H 0.13 -0.55 6.38 -52.49 -0.34 -0.88 16 45 H 0.13 -0.39 6.74 -52.48 -0.35 -0.75 16 LS Contribution 391.13 15.07 5.89 5.89 Total: 0.00 -8.74 391.13 -13.06 -21.80 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: -5.93 Total: -12.43 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -5.00 Total: -2.98 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -0.34 Total: 0.14 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.37 Total: -4.15 kcal Atomic # 9 Polarization: -0.50 SS G_CDS: 0.04 Total: -0.47 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: -5.26 Total: -5.80 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.09 Total: -2.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -8.74 -13.06 -21.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_13308390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.087 kcal (2) G-P(sol) polarization free energy of solvation -8.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds