Wall clock time and date at job start Sun Mar 7 2021 02:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.47091 * 2 1 4 4 C 1.50702 * 109.46756 * 240.00305 * 2 1 3 5 5 C 1.33740 * 125.11869 * 300.00258 * 4 2 1 6 6 C 1.37806 * 115.08243 * 180.02562 * 5 4 2 7 7 C 1.34982 * 114.69670 * 359.97438 * 6 5 4 8 8 C 1.47565 * 125.27143 * 180.02562 * 7 6 5 9 9 C 1.39827 * 119.99516 * 180.02562 * 8 7 6 10 10 C 1.36566 * 119.99819 * 179.97438 * 9 8 7 11 11 C 1.39831 * 119.99730 * 0.02562 * 10 9 8 12 12 C 1.47562 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21594 * 119.99873 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00001 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99801 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46888 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.46955 * 180.02562 * 16 15 14 18 18 H 1.08994 * 112.91116 * 43.75034 * 17 16 15 19 19 C 1.53787 * 113.61251 * 175.00343 * 17 16 15 20 20 C 1.53779 * 87.07963 * 139.97890 * 19 17 16 21 21 H 1.09007 * 113.61383 * 220.01369 * 20 19 17 22 22 F 1.39897 * 113.61427 * 89.11723 * 20 19 17 23 23 C 1.53779 * 87.08402 * 334.56577 * 20 19 17 24 24 C 1.39833 * 120.00235 * 0.27082 * 11 10 9 25 25 C 1.36569 * 119.99205 * 359.44877 * 24 11 10 26 26 S 1.75865 * 125.12054 * 120.32773 * 4 2 1 27 27 H 0.96704 * 113.99648 * 299.99950 * 1 2 3 28 28 H 1.08993 * 109.47142 * 120.00675 * 2 1 3 29 29 H 1.48502 * 110.00231 * 300.00001 * 3 2 1 30 30 H 1.48497 * 109.99888 * 61.32404 * 3 2 1 31 31 H 1.08001 * 122.46197 * 0.03212 * 5 4 2 32 32 H 1.07997 * 122.65024 * 180.02562 * 6 5 4 33 33 H 1.07997 * 119.99839 * 0.02562 * 9 8 7 34 34 H 1.08001 * 119.99887 * 180.02562 * 10 9 8 35 35 H 0.97000 * 119.99609 * 0.02562 * 14 12 11 36 36 H 1.09004 * 109.46928 * 60.00957 * 15 14 12 37 37 H 1.08994 * 109.47493 * 300.00321 * 15 14 12 38 38 H 1.08998 * 109.46831 * 60.00159 * 16 15 14 39 39 H 1.09003 * 109.46913 * 300.00244 * 16 15 14 40 40 H 1.08997 * 113.61028 * 254.52850 * 19 17 16 41 41 H 1.09000 * 113.61529 * 25.42990 * 19 17 16 42 42 H 1.09002 * 113.61557 * 270.88569 * 23 20 19 43 43 H 1.09004 * 113.61501 * 139.97990 * 23 20 19 44 44 H 1.07993 * 120.00291 * 179.70339 * 24 11 10 45 45 H 1.08003 * 119.99400 * 180.30010 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6720 -1.9846 -1.5430 6 6 2.2379 -2.4243 -2.7201 7 6 2.9673 -1.4971 -3.3760 8 6 3.6725 -1.7153 -4.6537 9 6 4.3993 -0.6733 -5.2379 10 6 5.0524 -0.8753 -6.4201 11 6 4.9938 -2.1240 -7.0467 12 6 5.6999 -2.3424 -8.3238 13 8 6.3323 -1.4364 -8.8316 14 7 5.6439 -3.5461 -8.9275 15 6 6.3446 -3.7628 -10.1957 16 6 6.1204 -5.2025 -10.6626 17 6 6.8526 -5.4290 -11.9868 18 1 7.8575 -5.0069 -11.9936 19 6 6.7920 -6.8833 -12.4833 20 6 6.5990 -6.3097 -13.8970 21 1 5.8727 -6.8593 -14.4958 22 9 7.7998 -6.0769 -14.5760 23 6 6.0188 -5.0548 -13.2236 24 6 4.2619 -3.1642 -6.4656 25 6 3.6136 -2.9637 -5.2804 26 16 2.9533 0.0091 -2.4678 27 1 -0.3933 0.4417 0.7651 28 1 1.7924 -0.5139 0.8899 29 1 1.5615 2.4679 -1.2085 30 1 1.5880 2.4585 1.2243 31 1 1.0636 -2.6223 -0.9188 32 1 2.1074 -3.4309 -3.0890 33 1 4.4448 0.2910 -4.7537 34 1 5.6140 -0.0705 -6.8711 35 1 5.1391 -4.2687 -8.5225 36 1 7.4113 -3.5878 -10.0560 37 1 5.9585 -3.0735 -10.9465 38 1 5.0537 -5.3772 -10.8024 39 1 6.5063 -5.8922 -9.9118 40 1 7.7280 -7.4272 -12.3568 41 1 5.9274 -7.4350 -12.1142 42 1 4.9429 -5.1067 -13.0568 43 1 6.3307 -4.1227 -13.6947 44 1 4.2128 -4.1271 -6.9519 45 1 3.0523 -3.7686 -4.8292 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_13308390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:12 Heat of formation + Delta-G solvation = -31.838299 kcal Electronic energy + Delta-G solvation = -27493.031589 eV Core-core repulsion = 23290.714636 eV Total energy + Delta-G solvation = -4202.316953 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.66591 -41.38802 -39.98036 -39.35422 -38.91549 -37.52683 -36.21497 -33.73020 -32.47271 -31.65076 -30.42841 -27.44800 -26.81403 -25.91868 -24.47512 -23.89006 -23.32088 -22.76181 -21.67388 -20.42275 -20.08909 -19.13813 -18.69542 -18.30719 -17.39354 -17.10995 -16.93591 -16.78408 -16.56967 -16.25025 -16.01962 -15.85951 -15.56990 -15.54342 -15.34401 -14.94126 -14.69358 -14.48791 -14.34782 -14.18161 -14.08988 -13.78568 -13.50452 -13.35308 -13.28794 -13.11829 -13.03100 -12.74931 -12.53460 -12.39153 -12.15995 -11.96231 -11.79858 -11.60030 -11.28817 -11.16360 -10.91415 -10.83717 -10.51011 -10.19549 -10.17622 -9.55010 -9.01430 -5.10261 -0.88362 0.24303 0.34599 0.38319 0.76121 1.17390 1.51256 1.57311 1.83922 1.96523 2.06085 2.83552 3.29569 3.30991 3.36109 3.42758 3.61799 3.67339 3.70569 3.74981 3.78373 3.85149 3.89135 4.12115 4.20812 4.25818 4.33095 4.37503 4.44645 4.47220 4.57054 4.60626 4.63612 4.74351 4.75635 4.83964 4.92790 4.94124 5.02131 5.03839 5.10331 5.13421 5.19450 5.23360 5.29224 5.33215 5.35559 5.49192 5.50852 5.73922 6.44758 6.51972 7.11753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.036 4.036 3 Si 0.702 3.298 4 C -0.184 4.184 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.161 4.161 8 C 0.007 3.993 9 C -0.130 4.130 10 C -0.065 4.065 11 C -0.151 4.151 12 C 0.553 3.447 13 O -0.585 6.585 14 N -0.710 5.710 15 C 0.118 3.882 16 C -0.107 4.107 17 C -0.110 4.110 18 H 0.081 0.919 19 C -0.147 4.147 20 C 0.043 3.957 21 H 0.113 0.887 22 F -0.222 7.222 23 C -0.158 4.158 24 C -0.066 4.066 25 C -0.108 4.108 26 S 0.119 5.881 27 H 0.399 0.601 28 H 0.113 0.887 29 H -0.285 1.285 30 H -0.252 1.252 31 H 0.156 0.844 32 H 0.170 0.830 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.417 0.583 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.066 0.934 44 H 0.166 0.834 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.288 -6.858 4.955 9.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.148 4.148 3 Si 0.604 3.396 4 C -0.301 4.301 5 C -0.143 4.143 6 C -0.145 4.145 7 C -0.278 4.278 8 C 0.005 3.995 9 C -0.149 4.149 10 C -0.084 4.084 11 C -0.155 4.155 12 C 0.342 3.658 13 O -0.466 6.466 14 N -0.363 5.363 15 C -0.006 4.006 16 C -0.144 4.144 17 C -0.129 4.129 18 H 0.099 0.901 19 C -0.185 4.185 20 C 0.007 3.993 21 H 0.131 0.869 22 F -0.203 7.203 23 C -0.196 4.196 24 C -0.084 4.084 25 C -0.128 4.128 26 S 0.386 5.614 27 H 0.250 0.750 28 H 0.130 0.870 29 H -0.212 1.212 30 H -0.176 1.176 31 H 0.173 0.827 32 H 0.188 0.812 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.256 0.744 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.183 0.817 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.286 -4.238 3.850 6.165 hybrid contribution -1.523 -1.055 0.586 1.943 sum -3.809 -5.293 4.436 7.886 Atomic orbital electron populations 1.86556 1.17884 1.80468 1.51394 1.24106 0.84191 1.09933 0.96588 0.94583 0.91088 0.74277 0.79604 1.24081 1.06477 0.98333 1.01239 1.20209 1.01126 0.95022 0.97926 1.20644 0.97654 1.01395 0.94783 1.23169 1.06960 0.98012 0.99663 1.18462 0.95017 0.94718 0.91293 1.21025 0.98407 0.99332 0.96091 1.20937 0.96669 0.96602 0.94172 1.20023 1.03103 0.96290 0.96057 1.18528 0.79967 0.82587 0.84698 1.90787 1.44663 1.44108 1.67080 1.45795 1.53186 1.12978 1.24298 1.21407 0.96486 0.98284 0.84374 1.21698 1.02300 0.93812 0.96636 1.22478 0.99513 0.96875 0.94032 0.90077 1.23613 1.04765 0.96593 0.93482 1.22744 0.82966 0.99847 0.93748 0.86940 1.92774 1.49652 1.95763 1.82124 1.23737 1.02073 0.97382 0.96373 1.21277 0.93661 0.98673 0.94820 1.21212 0.99972 0.96332 0.95242 1.84188 1.48620 1.13551 1.15023 0.74967 0.86970 1.21169 1.17629 0.82668 0.81234 0.84983 0.85466 0.74426 0.92820 0.92467 0.88754 0.89326 0.90741 0.85725 0.86126 0.91535 0.81667 0.81970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.36 12.83 -148.98 -1.91 -2.27 16 2 C -0.04 0.05 2.95 71.24 0.21 0.26 16 3 Si 0.70 -0.72 30.96 68.60 2.12 1.40 16 4 C -0.18 -0.30 5.76 24.66 0.14 -0.16 16 5 C -0.11 -0.03 10.00 21.15 0.21 0.18 16 6 C -0.11 0.13 9.64 21.42 0.21 0.34 16 7 C -0.16 -0.22 6.37 23.98 0.15 -0.07 16 8 C 0.01 0.01 5.88 -20.05 -0.12 -0.11 16 9 C -0.13 -0.39 9.54 22.26 0.21 -0.18 16 10 C -0.06 -0.32 9.53 22.26 0.21 -0.11 16 11 C -0.15 -0.41 5.88 -20.05 -0.12 -0.53 16 12 C 0.55 3.36 7.76 86.70 0.67 4.04 16 13 O -0.58 -9.15 16.33 -4.01 -0.07 -9.22 16 14 N -0.71 1.33 5.50 -466.23 -2.57 -1.24 16 15 C 0.12 -0.15 5.67 86.38 0.49 0.34 16 16 C -0.11 0.84 5.16 30.59 0.16 1.00 16 17 C -0.11 0.48 3.63 -10.27 -0.04 0.45 16 18 H 0.08 -0.06 8.13 -2.39 -0.02 -0.08 16 19 C -0.15 0.83 7.54 31.12 0.23 1.07 16 20 C 0.04 -0.08 5.69 31.12 0.18 0.09 16 21 H 0.11 -0.63 8.14 -2.38 -0.02 -0.65 16 22 F -0.22 -1.41 17.38 44.97 0.78 -0.63 16 23 C -0.16 0.62 7.53 31.12 0.23 0.86 16 24 C -0.07 0.28 9.48 22.27 0.21 0.49 16 25 C -0.11 0.40 9.48 22.26 0.21 0.61 16 26 S 0.12 0.26 19.46 -56.49 -1.10 -0.84 16 27 H 0.40 -3.08 8.74 -74.05 -0.65 -3.73 16 28 H 0.11 -0.72 7.96 -2.39 -0.02 -0.74 16 29 H -0.29 -1.99 7.11 99.48 0.71 -1.29 16 30 H -0.25 -0.28 7.11 99.48 0.71 0.43 16 31 H 0.16 -0.37 8.06 -2.91 -0.02 -0.39 16 32 H 0.17 -1.18 6.88 -2.91 -0.02 -1.20 16 33 H 0.13 0.20 7.26 -2.91 -0.02 0.18 16 34 H 0.13 0.87 7.64 -2.91 -0.02 0.85 16 35 H 0.42 -3.93 6.48 -92.71 -0.60 -4.53 16 36 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.09 -1.06 7.84 -2.39 -0.02 -1.08 16 39 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.12 -1.31 8.10 -2.39 -0.02 -1.33 16 42 H 0.12 -0.98 7.90 -2.39 -0.02 -1.00 16 43 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.17 -2.02 6.38 -2.91 -0.02 -2.03 16 45 H 0.16 -1.56 6.74 -2.91 -0.02 -1.58 16 Total: 0.00 -24.01 391.13 0.55 -23.46 By element: Atomic # 1 Polarization: -19.05 SS G_CDS: -0.17 Total: -19.22 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 3.46 Total: 8.57 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -2.57 Total: -1.24 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.98 Total: -11.49 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.78 Total: -0.63 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.12 Total: 1.40 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.10 Total: -0.84 kcal Total: -24.01 0.55 -23.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_13308390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.380 kcal (2) G-P(sol) polarization free energy of solvation -24.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds