Wall clock time and date at job start Sun Mar 7 2021 02:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37794 * 119.84947 * 2 1 4 4 C 1.39712 * 119.90616 * 180.30040 * 3 2 1 5 5 C 1.47535 * 120.18976 * 179.70145 * 4 3 2 6 6 O 1.21595 * 119.99815 * 179.72293 * 5 4 3 7 7 N 1.34769 * 120.00320 * 359.71711 * 5 4 3 8 8 C 1.46500 * 120.00241 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46998 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 11 11 H 1.08998 * 112.85433 * 316.19520 * 10 9 8 12 12 C 1.53780 * 113.61156 * 87.50652 * 10 9 8 13 13 C 1.53789 * 87.08347 * 139.97730 * 12 10 9 14 14 H 1.08998 * 113.61259 * 220.01705 * 13 12 10 15 15 F 1.39898 * 113.61254 * 89.11575 * 13 12 10 16 16 C 1.53784 * 87.07690 * 334.56585 * 13 12 10 17 17 C 1.40136 * 119.61526 * 359.42268 * 4 3 2 18 18 O 1.35654 * 120.14896 * 180.29981 * 17 4 3 19 19 C 1.38713 * 119.70369 * 0.27766 * 17 4 3 20 20 C 1.50693 * 119.96144 * 180.02562 * 19 17 4 21 21 O 1.42902 * 109.47267 * 74.99568 * 20 19 17 22 22 Si 1.86294 * 109.47204 * 194.99919 * 20 19 17 23 23 C 1.38054 * 120.07957 * 0.02562 * 19 17 4 24 24 H 1.09000 * 109.46917 * 270.30113 * 1 2 3 25 25 H 1.09000 * 109.46626 * 30.29964 * 1 2 3 26 26 H 1.08996 * 109.46987 * 150.29562 * 1 2 3 27 27 H 1.08001 * 120.04913 * 0.02562 * 3 2 1 28 28 H 0.97010 * 119.99849 * 0.02562 * 7 5 4 29 29 H 1.09000 * 109.47175 * 60.00333 * 8 7 5 30 30 H 1.09001 * 109.47297 * 299.99840 * 8 7 5 31 31 H 1.08993 * 109.46955 * 300.00226 * 9 8 7 32 32 H 1.09000 * 109.47050 * 60.00054 * 9 8 7 33 33 H 1.09003 * 113.61649 * 254.52794 * 12 10 9 34 34 H 1.08998 * 113.61947 * 25.43097 * 12 10 9 35 35 H 1.09001 * 113.61609 * 270.88057 * 16 13 12 36 36 H 1.09002 * 113.68788 * 139.99411 * 16 13 12 37 37 H 0.96703 * 113.99867 * 90.00300 * 18 17 4 38 38 H 1.08996 * 109.46990 * 315.00269 * 20 19 17 39 39 H 0.96705 * 113.99111 * 60.00310 * 21 20 19 40 40 H 1.48495 * 109.99925 * 58.68183 * 22 20 19 41 41 H 1.48502 * 110.00258 * 179.97438 * 22 20 19 42 42 H 1.08002 * 119.80110 * 180.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5899 1.1965 -0.0063 5 6 4.3305 2.4725 -0.0130 6 8 5.5465 2.4697 -0.0135 7 7 3.6594 3.6412 -0.0188 8 6 4.3949 4.9082 -0.0260 9 6 3.4033 6.0734 -0.0309 10 6 4.1714 7.3966 -0.0377 11 1 5.0113 7.4021 0.6569 12 6 4.5327 7.8918 -1.4481 13 6 4.1845 9.3064 -0.9553 14 1 3.6480 9.9053 -1.6912 15 9 5.2683 9.9843 -0.3871 16 6 3.2667 8.6347 0.0797 17 6 4.2837 -0.0210 -0.0004 18 8 5.6402 -0.0323 -0.0003 19 6 3.5771 -1.2147 0.0059 20 6 4.3172 -2.5273 0.0129 21 8 4.8550 -2.7641 1.3155 22 14 3.1445 -3.9039 -0.4345 23 6 2.1966 -1.2016 0.0057 24 1 -0.3633 0.0054 1.0277 25 1 -0.3632 0.8873 -0.5185 26 1 -0.3633 -0.8926 -0.5092 27 1 1.6512 2.1295 0.0004 28 1 2.6893 3.6435 -0.0182 29 1 5.0210 4.9598 -0.9167 30 1 5.0223 4.9693 0.8633 31 1 2.7756 6.0126 -0.9198 32 1 2.7774 6.0217 0.8601 33 1 5.5856 7.7638 -1.6995 34 1 3.8631 7.5231 -2.2252 35 1 2.2511 8.4690 -0.2796 36 1 3.2965 9.1055 1.0624 37 1 6.0335 -0.0313 0.8831 38 1 5.1287 -2.4907 -0.7139 39 1 4.1878 -2.8090 2.0141 40 1 2.5543 -3.6532 -1.7738 41 1 3.8624 -5.2039 -0.4317 42 1 1.6510 -2.1337 0.0110 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_13422088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:34:20 Heat of formation + Delta-G solvation = -116.920860 kcal Electronic energy + Delta-G solvation = -25261.083256 eV Core-core repulsion = 21315.684588 eV Total energy + Delta-G solvation = -3945.398667 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.68333 -41.76086 -40.20153 -39.31935 -38.07196 -37.65395 -36.11182 -33.30245 -33.01072 -31.37217 -27.52323 -26.91567 -26.77999 -26.40277 -24.47826 -22.87555 -21.97774 -21.49707 -20.42518 -19.65729 -18.41009 -18.02197 -17.44693 -17.21427 -16.96458 -16.76254 -16.60030 -16.29443 -16.11617 -15.92401 -15.58617 -15.42828 -14.92491 -14.86754 -14.53625 -14.33342 -14.22931 -13.80927 -13.66560 -13.48477 -13.27573 -13.10756 -12.86481 -12.60205 -12.51000 -12.18725 -12.13105 -11.97448 -11.81894 -11.75212 -11.23152 -11.15090 -10.90303 -10.43969 -10.32828 -10.03060 -9.50052 -5.06534 -0.35699 0.05893 1.24092 1.62535 1.69541 1.94160 2.04711 2.54182 3.17865 3.27443 3.34011 3.41457 3.53218 3.59623 3.60226 3.71434 3.79141 3.86531 4.08059 4.13478 4.18920 4.22674 4.37485 4.42586 4.53160 4.57889 4.60965 4.71790 4.73238 4.81394 4.83668 4.92141 4.94210 4.99602 5.01466 5.09857 5.16297 5.19570 5.28929 5.33646 5.43440 5.48523 5.69507 6.43108 6.66999 6.74891 7.12559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.061 4.061 4 C -0.182 4.182 5 C 0.551 3.449 6 O -0.570 6.570 7 N -0.712 5.712 8 C 0.120 3.880 9 C -0.106 4.106 10 C -0.110 4.110 11 H 0.080 0.920 12 C -0.159 4.159 13 C 0.044 3.956 14 H 0.113 0.887 15 F -0.222 7.222 16 C -0.146 4.146 17 C 0.157 3.843 18 O -0.497 6.497 19 C -0.159 4.159 20 C -0.076 4.076 21 O -0.554 6.554 22 Si 0.797 3.203 23 C -0.070 4.070 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.162 0.838 28 H 0.415 0.585 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.075 0.925 37 H 0.402 0.598 38 H 0.090 0.910 39 H 0.396 0.604 40 H -0.284 1.284 41 H -0.300 1.300 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.058 0.085 2.145 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.080 4.080 4 C -0.186 4.186 5 C 0.339 3.661 6 O -0.450 6.450 7 N -0.365 5.365 8 C -0.003 4.003 9 C -0.144 4.144 10 C -0.129 4.129 11 H 0.099 0.901 12 C -0.197 4.197 13 C 0.008 3.992 14 H 0.131 0.869 15 F -0.203 7.203 16 C -0.183 4.183 17 C 0.110 3.890 18 O -0.309 6.309 19 C -0.160 4.160 20 C -0.185 4.185 21 O -0.362 6.362 22 Si 0.702 3.298 23 C -0.088 4.088 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.179 0.821 28 H 0.254 0.746 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.094 0.906 37 H 0.261 0.739 38 H 0.108 0.892 39 H 0.246 0.754 40 H -0.210 1.210 41 H -0.229 1.229 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.841 -0.479 0.682 11.870 hybrid contribution 1.298 0.615 0.238 1.456 sum -10.542 0.135 0.919 10.583 Atomic orbital electron populations 1.20938 0.87596 1.04611 1.04210 1.20176 0.98338 0.91615 0.99127 1.21454 0.90704 1.00128 0.95669 1.20419 0.95276 0.92331 1.10540 1.18417 0.86908 0.84633 0.76153 1.90815 1.15273 1.88061 1.50820 1.45787 1.11114 1.04844 1.74794 1.21372 0.95352 0.82334 1.01278 1.21693 0.97161 0.90757 1.04740 1.22473 0.98886 0.94253 0.97263 0.90119 1.23739 1.03228 0.94446 0.98245 1.22740 0.85685 0.93351 0.97449 0.86879 1.92775 1.58435 1.82113 1.86985 1.23608 0.99752 0.95235 0.99748 1.18627 0.83462 0.91110 0.95765 1.84651 1.15770 1.96109 1.34386 1.20752 0.94974 0.94965 1.05341 1.25253 1.04147 1.00151 0.88935 1.86503 1.38688 1.94465 1.16527 0.94014 0.80365 0.72793 0.82633 1.21325 0.91646 0.99600 0.96182 0.89106 0.90014 0.89969 0.82062 0.74621 0.92900 0.92893 0.88844 0.89205 0.91674 0.86179 0.85676 0.90649 0.73872 0.89219 0.75446 1.21031 1.22855 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.41 10.00 71.24 0.71 2.12 16 2 C -0.09 0.57 5.87 -19.90 -0.12 0.45 16 3 C -0.06 0.26 9.18 22.52 0.21 0.47 16 4 C -0.18 -0.73 5.89 -20.01 -0.12 -0.85 16 5 C 0.55 4.25 7.76 86.70 0.67 4.93 16 6 O -0.57 -9.89 15.16 16.90 0.26 -9.64 16 7 N -0.71 0.51 5.51 -466.26 -2.57 -2.05 16 8 C 0.12 -0.03 5.66 86.38 0.49 0.46 16 9 C -0.11 0.78 5.16 30.60 0.16 0.93 16 10 C -0.11 0.43 3.63 -10.27 -0.04 0.40 16 11 H 0.08 -0.02 8.13 -2.39 -0.02 -0.04 16 12 C -0.16 0.53 7.53 31.12 0.23 0.76 16 13 C 0.04 -0.07 5.69 31.12 0.18 0.10 16 14 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 15 F -0.22 -1.48 17.38 44.97 0.78 -0.69 16 16 C -0.15 0.81 7.54 31.12 0.23 1.04 16 17 C 0.16 1.10 6.69 22.84 0.15 1.25 16 18 O -0.50 -5.84 10.91 -68.77 -0.75 -6.59 16 19 C -0.16 -0.25 5.27 -19.80 -0.10 -0.35 16 20 C -0.08 -0.14 2.38 71.23 0.17 0.03 16 21 O -0.55 -0.74 12.88 -148.98 -1.92 -2.65 16 22 Si 0.80 -2.09 29.91 68.60 2.05 -0.03 16 23 C -0.07 0.32 8.30 22.30 0.19 0.50 16 24 H 0.09 -1.26 8.14 -2.39 -0.02 -1.27 16 25 H 0.08 -1.10 8.08 -2.39 -0.02 -1.12 16 26 H 0.08 -1.07 8.08 -2.39 -0.02 -1.09 16 27 H 0.16 -1.84 6.40 -2.91 -0.02 -1.86 16 28 H 0.42 -3.47 6.50 -92.70 -0.60 -4.08 16 29 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.09 -0.99 7.84 -2.39 -0.02 -1.01 16 32 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H 0.06 0.01 8.14 -2.39 -0.02 0.00 16 34 H 0.12 -0.90 7.90 -2.39 -0.02 -0.92 16 35 H 0.13 -1.31 8.10 -2.39 -0.02 -1.33 16 36 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.40 2.80 9.06 -74.06 -0.67 2.13 16 38 H 0.09 0.64 7.83 -2.39 -0.02 0.62 16 39 H 0.40 -3.25 8.70 -74.05 -0.64 -3.89 16 40 H -0.28 -0.58 7.11 99.48 0.71 0.13 16 41 H -0.30 -1.63 7.11 99.48 0.71 -0.92 16 42 H 0.17 -1.78 5.10 -2.91 -0.01 -1.79 16 Total: 0.00 -27.42 351.23 0.06 -27.36 By element: Atomic # 1 Polarization: -17.13 SS G_CDS: -0.81 Total: -17.94 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 3.02 Total: 12.25 kcal Atomic # 7 Polarization: 0.51 SS G_CDS: -2.57 Total: -2.05 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -2.41 Total: -18.88 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.78 Total: -0.69 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.05 Total: -0.03 kcal Total: -27.42 0.06 -27.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_13422088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.564 kcal (2) G-P(sol) polarization free energy of solvation -27.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds