Wall clock time and date at job start Sun Mar 7 2021 01:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47061 * 2 1 4 4 C 1.35901 * 116.99931 * 84.94973 * 3 2 1 5 5 C 1.38726 * 120.05360 * 174.27790 * 4 3 2 6 6 C 1.38150 * 119.94365 * 179.74200 * 5 4 3 7 7 C 1.38267 * 120.05022 * 0.50735 * 6 5 4 8 8 C 1.50701 * 119.94091 * 179.74083 * 7 6 5 9 9 O 1.42904 * 109.47090 * 120.02549 * 8 7 6 10 10 Si 1.86295 * 109.47413 * 0.02668 * 8 7 6 11 11 C 1.38262 * 120.11539 * 359.76717 * 7 6 5 12 12 C 1.38149 * 120.05407 * 359.97438 * 11 7 6 13 13 C 1.50706 * 109.47109 * 240.00430 * 2 1 3 14 14 O 1.21277 * 119.99914 * 119.99892 * 13 2 1 15 15 N 1.34777 * 119.99537 * 299.99688 * 13 2 1 16 16 C 1.46499 * 119.99778 * 180.02562 * 15 13 2 17 17 H 1.09000 * 112.85011 * 23.80831 * 16 15 13 18 18 C 1.53788 * 113.61551 * 155.00052 * 16 15 13 19 19 C 1.53779 * 87.08066 * 140.06722 * 18 16 15 20 20 H 1.08995 * 113.61750 * 89.20140 * 19 18 16 21 21 C 1.52999 * 113.60935 * 220.01805 * 19 18 16 22 22 N 1.46500 * 109.47119 * 184.99772 * 21 19 18 23 23 C 1.36882 * 126.39851 * 90.00069 * 22 21 19 24 24 C 1.34662 * 106.82001 * 179.74044 * 23 22 21 25 25 N 1.34129 * 108.02378 * 0.22853 * 24 23 22 26 26 C 1.30499 * 109.25314 * 359.97438 * 25 24 23 27 27 C 1.53776 * 113.69151 * 252.53546 * 16 15 13 28 28 H 1.08997 * 109.47604 * 299.99850 * 1 2 3 29 29 H 1.09002 * 109.47513 * 60.00468 * 1 2 3 30 30 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47205 * 120.00203 * 2 1 3 32 32 H 1.07999 * 120.03065 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.97721 * 180.27568 * 6 5 4 34 34 H 1.08996 * 109.47646 * 240.02070 * 8 7 6 35 35 H 0.96696 * 114.00199 * 180.02562 * 9 8 7 36 36 H 1.48501 * 110.00180 * 59.99240 * 10 8 7 37 37 H 1.48492 * 110.00280 * 181.31789 * 10 8 7 38 38 H 1.07995 * 119.97375 * 179.97438 * 11 7 6 39 39 H 1.08001 * 120.02407 * 179.97438 * 12 11 7 40 40 H 0.96999 * 120.00208 * 359.97438 * 15 13 2 41 41 H 1.08998 * 113.61310 * 25.51322 * 18 16 15 42 42 H 1.09002 * 113.60847 * 254.61799 * 18 16 15 43 43 H 1.09002 * 109.47444 * 65.00146 * 21 19 18 44 44 H 1.08996 * 109.47349 * 305.00030 * 21 19 18 45 45 H 1.08005 * 126.58843 * 359.97438 * 23 22 21 46 46 H 1.08005 * 125.99009 * 180.22435 * 24 23 22 47 47 H 1.07996 * 125.65104 * 180.02562 * 26 25 24 48 48 H 1.08997 * 113.61764 * 105.45940 * 27 16 15 49 49 H 1.09004 * 113.61642 * 334.55215 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1115 1.9645 1.2062 5 6 2.6775 3.2280 1.2931 6 6 2.7784 3.8556 2.5197 7 6 2.3253 3.2209 3.6615 8 6 2.4419 3.9054 4.9990 9 8 1.1405 4.0658 5.5671 10 14 3.2317 5.5776 4.7742 11 6 1.7660 1.9593 3.5783 12 6 1.6580 1.3297 2.3533 13 6 2.0323 -0.7103 -1.2306 14 8 2.7296 -0.1209 -2.0288 15 7 1.7067 -2.0007 -1.4438 16 6 2.1955 -2.6914 -2.6397 17 1 3.1011 -2.2423 -3.0476 18 6 2.2849 -4.2180 -2.4762 19 6 1.7535 -4.3244 -3.9153 20 1 2.5381 -4.3230 -4.6718 21 6 0.7401 -5.4536 -4.1123 22 7 0.3856 -5.5496 -5.5306 23 6 1.0141 -6.3157 -6.4749 24 6 0.3655 -6.1113 -7.6372 25 7 -0.6288 -5.2402 -7.4100 26 6 -0.6213 -4.8975 -6.1509 27 6 1.1059 -2.9471 -3.6943 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8899 32 1 3.0356 3.7223 0.4021 33 1 3.2149 4.8411 2.5873 34 1 3.0567 3.2998 5.6648 35 1 1.1392 4.5008 6.4307 36 1 2.4031 6.4131 3.8684 37 1 3.3814 6.2496 6.0899 38 1 1.4132 1.4655 4.4716 39 1 1.2213 0.3440 2.2890 40 1 1.1494 -2.4722 -0.8051 41 1 1.6011 -4.6176 -1.7274 42 1 3.3044 -4.5854 -2.3589 43 1 -0.1555 -5.2444 -3.5274 44 1 1.1775 -6.3959 -3.7826 45 1 1.8643 -6.9629 -6.3172 46 1 0.6042 -6.5686 -8.5861 47 1 -1.3087 -4.2093 -5.6817 48 1 1.1734 -2.2889 -4.5604 49 1 0.0996 -2.9995 -3.2786 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:25:33 Heat of formation + Delta-G solvation = 23.717758 kcal Electronic energy + Delta-G solvation = -30519.161153 eV Core-core repulsion = 26222.709528 eV Total energy + Delta-G solvation = -4296.451625 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.93485 -41.85008 -40.96320 -39.74918 -38.83355 -37.34917 -35.53128 -34.34600 -32.93854 -32.10011 -31.44986 -30.37548 -28.77120 -26.73972 -26.70908 -25.69112 -24.40035 -23.61105 -22.31275 -22.25509 -21.72329 -21.49867 -20.63034 -19.49950 -18.67308 -18.49133 -18.27403 -17.47038 -16.86377 -16.82833 -16.75817 -16.29891 -16.07646 -15.86004 -15.78302 -15.44106 -15.27731 -15.01490 -14.81690 -14.42288 -14.36355 -14.28045 -14.07980 -13.98549 -13.90600 -13.54329 -13.49665 -13.42256 -13.32204 -12.95741 -12.91739 -12.38386 -12.25709 -12.23177 -11.96967 -11.86243 -11.73248 -11.49055 -10.93163 -10.89523 -10.49240 -10.47337 -10.14285 -10.04691 -9.43413 -9.21305 -4.93112 0.23287 0.32254 1.16360 1.30978 1.37305 1.51585 1.58846 1.94532 1.95261 2.24558 2.49654 2.60857 3.36346 3.40306 3.45512 3.47148 3.65023 3.69962 3.75560 3.81059 3.83480 3.88364 3.89891 3.92472 4.08976 4.13066 4.20185 4.24954 4.32585 4.43456 4.48527 4.57463 4.62136 4.62778 4.67314 4.71272 4.73443 4.78992 4.82592 4.95077 4.98213 5.03685 5.07897 5.15725 5.17688 5.27610 5.36851 5.48953 5.50730 5.66644 5.84279 6.25698 6.33945 6.45142 6.60506 7.09824 7.17943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.063 3.937 3 O -0.313 6.313 4 C 0.119 3.881 5 C -0.160 4.160 6 C -0.079 4.079 7 C -0.124 4.124 8 C -0.074 4.074 9 O -0.558 6.558 10 Si 0.750 3.250 11 C -0.057 4.057 12 C -0.206 4.206 13 C 0.516 3.484 14 O -0.573 6.573 15 N -0.694 5.694 16 C 0.114 3.886 17 H 0.085 0.915 18 C -0.114 4.114 19 C -0.118 4.118 20 H 0.085 0.915 21 C 0.115 3.885 22 N -0.453 5.453 23 C -0.048 4.048 24 C -0.068 4.068 25 N -0.549 5.549 26 C 0.176 3.824 27 C -0.146 4.146 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.395 0.605 36 H -0.303 1.303 37 H -0.285 1.285 38 H 0.142 0.858 39 H 0.158 0.842 40 H 0.422 0.578 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.201 0.799 46 H 0.170 0.830 47 H 0.224 0.776 48 H 0.047 0.953 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 -6.901 9.415 11.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 O -0.227 6.227 4 C 0.074 3.926 5 C -0.179 4.179 6 C -0.097 4.097 7 C -0.125 4.125 8 C -0.183 4.183 9 O -0.368 6.368 10 Si 0.656 3.344 11 C -0.075 4.075 12 C -0.225 4.225 13 C 0.302 3.698 14 O -0.451 6.451 15 N -0.348 5.348 16 C 0.009 3.991 17 H 0.104 0.896 18 C -0.152 4.152 19 C -0.138 4.138 20 H 0.103 0.897 21 C -0.006 4.006 22 N -0.135 5.135 23 C -0.182 4.182 24 C -0.215 4.215 25 N -0.268 5.268 26 C -0.107 4.107 27 C -0.184 4.184 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.162 0.838 34 H 0.116 0.884 35 H 0.245 0.755 36 H -0.231 1.231 37 H -0.212 1.212 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.261 0.739 41 H 0.142 0.858 42 H 0.104 0.896 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.217 0.783 46 H 0.188 0.812 47 H 0.240 0.760 48 H 0.066 0.934 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.891 -5.565 7.780 9.607 hybrid contribution -0.466 -0.062 1.181 1.271 sum 0.425 -5.626 8.962 10.590 Atomic orbital electron populations 1.22379 0.90604 1.05864 1.04153 1.22459 0.97091 0.82143 0.97961 1.86189 1.81504 1.27143 1.27846 1.19236 0.95921 0.93113 0.84324 1.20553 1.04045 0.94286 0.99014 1.20920 0.98281 0.99441 0.91044 1.19428 1.03236 0.95925 0.93864 1.24815 0.88902 1.10133 0.94483 1.86537 1.27853 1.82339 1.40037 0.94275 0.87399 0.73851 0.78864 1.21007 0.95021 0.93744 0.97721 1.21528 1.06484 1.02722 0.91724 1.20580 0.79534 0.82902 0.86783 1.90757 1.39172 1.67027 1.48114 1.45678 1.53164 1.10265 1.25682 1.22488 0.97767 0.93192 0.85633 0.89635 1.23310 1.03785 0.92266 0.95854 1.22643 0.98289 0.94233 0.98615 0.89700 1.22208 1.00564 1.00942 0.76934 1.45761 1.24255 1.33068 1.10370 1.23153 1.03166 1.02669 0.89214 1.22624 0.96686 1.02330 0.99817 1.70237 1.23572 1.16380 1.16589 1.25408 0.95006 1.01369 0.88928 1.23607 0.99956 0.96333 0.98536 0.89976 0.92342 0.86732 0.85383 0.84708 0.83793 0.88360 0.75505 1.23114 1.21165 0.84024 0.82458 0.73902 0.85829 0.89648 0.86226 0.86666 0.78251 0.81232 0.75999 0.93364 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.17 9.07 71.98 0.65 1.82 16 2 C 0.06 -0.12 2.64 29.85 0.08 -0.04 16 3 O -0.31 -2.16 9.33 -73.40 -0.69 -2.84 16 4 C 0.12 0.56 6.60 22.50 0.15 0.71 16 5 C -0.16 -0.82 9.99 22.37 0.22 -0.60 16 6 C -0.08 -0.21 8.66 22.26 0.19 -0.02 16 7 C -0.12 -0.26 5.42 -19.85 -0.11 -0.37 16 8 C -0.07 0.08 2.81 71.24 0.20 0.28 16 9 O -0.56 -0.68 12.74 -148.98 -1.90 -2.58 16 10 Si 0.75 -1.00 29.78 68.60 2.04 1.04 16 11 C -0.06 -0.04 9.60 22.25 0.21 0.18 16 12 C -0.21 0.04 8.24 22.37 0.18 0.22 16 13 C 0.52 1.17 7.23 87.66 0.63 1.80 16 14 O -0.57 -8.25 16.10 16.02 0.26 -7.99 16 15 N -0.69 4.78 5.25 -440.03 -2.31 2.47 16 16 C 0.11 -0.62 4.24 45.52 0.19 -0.42 16 17 H 0.09 0.16 7.46 -2.39 -0.02 0.14 16 18 C -0.11 1.44 7.39 31.12 0.23 1.67 16 19 C -0.12 1.13 3.96 -10.27 -0.04 1.09 16 20 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 21 C 0.11 -1.30 5.99 86.38 0.52 -0.78 16 22 N -0.45 1.21 2.75 -529.07 -1.46 -0.25 16 23 C -0.05 0.00 11.58 83.08 0.96 0.97 16 24 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 25 N -0.55 -5.59 11.25 -200.31 -2.25 -7.85 16 26 C 0.18 0.40 12.56 180.26 2.26 2.67 16 27 C -0.15 0.97 7.43 31.12 0.23 1.20 16 28 H 0.08 -0.55 6.91 -2.39 -0.02 -0.56 16 29 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.11 -1.65 7.56 -2.39 -0.02 -1.67 16 31 H 0.13 -1.01 6.31 -2.39 -0.02 -1.03 16 32 H 0.14 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.14 -0.13 4.87 -2.91 -0.01 -0.14 16 34 H 0.10 -0.55 7.96 -2.39 -0.02 -0.57 16 35 H 0.39 -2.62 8.74 -74.06 -0.65 -3.27 16 36 H -0.30 -2.04 7.11 99.48 0.71 -1.34 16 37 H -0.28 -0.70 7.11 99.48 0.71 0.01 16 38 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 39 H 0.16 -1.06 5.43 -2.91 -0.02 -1.07 16 40 H 0.42 -6.45 8.15 -92.71 -0.76 -7.20 16 41 H 0.12 -2.26 8.08 -2.39 -0.02 -2.28 16 42 H 0.08 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.12 -1.85 7.84 -2.39 -0.02 -1.87 16 44 H 0.12 -1.66 8.14 -2.39 -0.02 -1.68 16 45 H 0.20 -1.33 8.06 -2.91 -0.02 -1.36 16 46 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 47 H 0.22 -0.96 8.06 -2.91 -0.02 -0.98 16 48 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 49 H 0.11 -1.20 7.90 -2.38 -0.02 -1.22 16 Total: 0.00 -35.12 404.94 1.09 -34.03 By element: Atomic # 1 Polarization: -26.60 SS G_CDS: -0.38 Total: -26.97 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 7.77 Total: 10.95 kcal Atomic # 7 Polarization: 0.39 SS G_CDS: -6.02 Total: -5.63 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -2.33 Total: -13.41 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: 2.04 Total: 1.04 kcal Total: -35.12 1.09 -34.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.744 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds