Wall clock time and date at job start Sun Mar 7 2021 01:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.37647 * 125.68136 * 2 1 4 4 C 1.46679 * 126.23232 * 359.97438 * 3 2 1 5 5 O 1.21691 * 119.99831 * 5.28858 * 4 3 2 6 6 N 1.34772 * 120.00268 * 185.28930 * 4 3 2 7 7 C 1.46502 * 120.00431 * 174.95071 * 6 4 3 8 8 H 1.09003 * 112.84826 * 23.80579 * 7 6 4 9 9 C 1.53783 * 113.61805 * 154.99840 * 7 6 4 10 10 C 1.53777 * 87.08043 * 139.98529 * 9 7 6 11 11 H 1.08999 * 113.61432 * 89.20161 * 10 9 7 12 12 C 1.53003 * 113.61368 * 220.02364 * 10 9 7 13 13 N 1.46501 * 109.47060 * 183.47333 * 12 10 9 14 14 C 1.36883 * 126.39791 * 89.99509 * 13 12 10 15 15 C 1.34674 * 106.81724 * 180.02562 * 14 13 12 16 16 N 1.34130 * 108.01854 * 0.02562 * 15 14 13 17 17 C 1.30493 * 109.25694 * 359.97438 * 16 15 14 18 18 C 1.53784 * 87.17675 * 334.61299 * 10 9 7 19 19 C 1.37872 * 107.53938 * 180.24727 * 3 2 1 20 20 C 1.39836 * 107.08214 * 359.58419 * 19 3 2 21 21 C 1.35460 * 107.86475 * 0.41757 * 20 19 3 22 22 C 1.50698 * 125.56527 * 179.75501 * 21 20 19 23 23 O 1.42901 * 109.46918 * 149.97870 * 22 21 20 24 24 Si 1.86303 * 109.46752 * 29.98428 * 22 21 20 25 25 H 1.08999 * 109.47623 * 95.78296 * 1 2 3 26 26 H 1.09004 * 109.46819 * 215.78488 * 1 2 3 27 27 H 1.09008 * 109.46877 * 335.78315 * 1 2 3 28 28 H 0.96998 * 120.00038 * 354.95862 * 6 4 3 29 29 H 1.09001 * 113.61089 * 25.43419 * 9 7 6 30 30 H 1.08992 * 113.61315 * 254.53364 * 9 7 6 31 31 H 1.08990 * 109.47155 * 63.47173 * 12 10 9 32 32 H 1.09000 * 109.46632 * 303.46669 * 12 10 9 33 33 H 1.07992 * 126.59325 * 0.02562 * 14 13 12 34 34 H 1.07996 * 125.99255 * 180.02562 * 15 14 13 35 35 H 1.08008 * 125.65016 * 179.97438 * 17 16 15 36 36 H 1.08996 * 113.61855 * 139.94003 * 18 10 9 37 37 H 1.09005 * 113.61230 * 270.84381 * 18 10 9 38 38 H 1.08001 * 126.46168 * 179.74255 * 19 3 2 39 39 H 1.07995 * 126.07273 * 180.16218 * 20 19 3 40 40 H 1.08998 * 109.47544 * 269.98119 * 22 21 20 41 41 H 0.96707 * 114.00038 * 300.00306 * 23 22 21 42 42 H 1.48499 * 110.00182 * 58.67637 * 24 22 21 43 43 H 1.48504 * 109.99810 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8124 2.5124 -0.0005 5 8 0.6259 2.7650 0.0961 6 7 2.7080 3.5138 -0.1081 7 6 2.2471 4.8999 -0.2200 8 1 1.2506 5.0495 0.1956 9 6 3.2780 5.9330 0.2647 10 6 2.8536 6.8011 -0.9315 11 1 2.0235 7.4723 -0.7112 12 6 4.0223 7.5079 -1.6211 13 7 3.5101 8.3702 -2.6890 14 6 3.1425 9.6831 -2.5669 15 6 2.7325 10.0877 -3.7842 16 7 2.8462 9.0500 -4.6264 17 6 3.3115 8.0180 -3.9775 18 6 2.4245 5.4985 -1.6273 19 6 3.5780 0.6888 -0.0057 20 6 3.5521 -0.7093 0.0006 21 6 2.2554 -1.1010 0.0004 22 6 1.7708 -2.5279 0.0009 23 8 0.5128 -2.6035 0.6746 24 14 3.0115 -3.6047 0.8795 25 1 -0.3634 -0.1035 -1.0224 26 1 -0.3633 -0.8337 0.6010 27 1 -0.3633 0.9373 0.4216 28 1 3.6577 3.3168 -0.1114 29 1 4.3084 5.5822 0.2060 30 1 3.0340 6.3727 1.2317 31 1 4.6966 6.7647 -2.0462 32 1 4.5616 8.1134 -0.8925 33 1 3.1749 10.2797 -1.6673 34 1 2.3749 11.0747 -4.0378 35 1 3.5051 7.0433 -4.4005 36 1 1.4926 5.5881 -2.1854 37 1 3.2212 5.0288 -2.2043 38 1 4.4583 1.3144 -0.0111 39 1 4.4131 -1.3612 0.0010 40 1 1.6539 -2.8724 -1.0267 41 1 0.5420 -2.3117 1.5961 42 1 3.2036 -3.1260 2.2720 43 1 2.5449 -5.0146 0.8874 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:25:42 Heat of formation + Delta-G solvation = 80.742618 kcal Electronic energy + Delta-G solvation = -25810.813107 eV Core-core repulsion = 22053.854306 eV Total energy + Delta-G solvation = -3756.958801 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.93721 -42.60626 -40.93957 -39.33632 -37.95145 -35.53957 -34.29511 -33.56907 -31.38908 -30.37355 -28.85943 -27.54869 -26.89149 -26.70253 -24.26639 -22.91805 -22.25714 -21.78884 -21.39374 -21.01648 -20.25972 -18.85445 -18.45926 -18.12611 -17.38668 -16.97208 -16.52386 -16.21003 -16.10648 -15.95945 -15.46280 -15.35905 -15.19340 -14.89123 -14.82235 -14.52975 -14.27580 -14.24464 -14.05097 -13.82910 -13.50510 -13.42990 -13.23434 -12.96053 -12.93957 -12.38075 -12.23270 -11.98259 -11.95352 -11.50151 -11.23582 -10.89801 -10.82243 -10.48203 -10.15531 -9.74702 -9.43355 -9.10300 -4.87762 0.34470 1.16147 1.18366 1.53377 1.73020 1.77321 1.94265 2.02976 2.24472 2.30316 2.36255 3.13323 3.37288 3.47307 3.56148 3.67915 3.70272 3.80617 3.89925 3.96434 4.08528 4.13063 4.20666 4.25693 4.35235 4.43986 4.48250 4.54872 4.62145 4.66177 4.71036 4.73756 4.78125 4.82142 4.95223 5.02716 5.09737 5.16434 5.20489 5.37200 5.51391 5.73458 5.84329 5.99484 6.12149 6.28319 6.33781 6.48463 7.12020 7.17908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.409 5.409 3 C -0.087 4.087 4 C 0.584 3.416 5 O -0.593 6.593 6 N -0.691 5.691 7 C 0.116 3.884 8 H 0.088 0.912 9 C -0.115 4.115 10 C -0.116 4.116 11 H 0.086 0.914 12 C 0.115 3.885 13 N -0.453 5.453 14 C -0.048 4.048 15 C -0.068 4.068 16 N -0.548 5.548 17 C 0.176 3.824 18 C -0.145 4.145 19 C -0.122 4.122 20 C -0.201 4.201 21 C 0.004 3.996 22 C -0.069 4.069 23 O -0.548 6.548 24 Si 0.820 3.180 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.420 0.580 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.200 0.800 34 H 0.171 0.829 35 H 0.224 0.776 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.180 0.820 39 H 0.186 0.814 40 H 0.130 0.870 41 H 0.386 0.614 42 H -0.290 1.290 43 H -0.299 1.299 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.135 -2.124 4.028 10.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.082 5.082 3 C -0.200 4.200 4 C 0.374 3.626 5 O -0.476 6.476 6 N -0.342 5.342 7 C 0.011 3.989 8 H 0.106 0.894 9 C -0.153 4.153 10 C -0.136 4.136 11 H 0.104 0.896 12 C -0.006 4.006 13 N -0.135 5.135 14 C -0.182 4.182 15 C -0.215 4.215 16 N -0.267 5.267 17 C -0.107 4.107 18 C -0.184 4.184 19 C -0.148 4.148 20 C -0.224 4.224 21 C -0.113 4.113 22 C -0.177 4.177 23 O -0.356 6.356 24 Si 0.722 3.278 25 H 0.085 0.915 26 H 0.129 0.871 27 H 0.104 0.896 28 H 0.259 0.741 29 H 0.140 0.860 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.217 0.783 34 H 0.188 0.812 35 H 0.240 0.760 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.197 0.803 39 H 0.203 0.797 40 H 0.148 0.852 41 H 0.236 0.764 42 H -0.217 1.217 43 H -0.226 1.226 Dipole moment (debyes) X Y Z Total from point charges 7.702 -2.713 3.449 8.864 hybrid contribution -1.254 0.586 1.224 1.847 sum 6.448 -2.128 4.672 8.242 Atomic orbital electron populations 1.22496 0.76309 1.05711 1.03979 1.43919 1.06964 1.04813 1.52518 1.20267 0.91686 0.87179 1.20876 1.17338 0.85383 0.84620 0.75252 1.90762 1.18413 1.85411 1.53010 1.45458 1.10057 1.05225 1.73418 1.22535 0.99613 0.79238 0.97526 0.89429 1.23301 1.00285 0.93714 0.98006 1.22627 0.98441 0.95362 0.97126 0.89554 1.22199 0.95763 0.94219 0.88468 1.45759 1.47478 1.10175 1.10042 1.23152 1.07226 0.86158 1.01657 1.22633 1.08383 0.99547 0.90926 1.70234 1.20358 1.01072 1.35049 1.25406 1.03070 1.00713 0.81501 1.23627 1.02240 0.95890 0.96600 1.21748 0.94208 0.95808 1.03063 1.21036 0.95290 0.95687 1.10412 1.21482 0.91678 0.89219 1.08935 1.25301 0.93355 0.94374 1.04624 1.86564 1.30797 1.88359 1.29897 0.93298 0.82686 0.73148 0.78619 0.91470 0.87144 0.89620 0.74149 0.85995 0.89639 0.86264 0.86644 0.78266 0.81190 0.76020 0.93264 0.87438 0.80258 0.79728 0.85224 0.76430 1.21660 1.22646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.27 10.32 127.77 1.32 1.59 16 2 N -0.41 -1.83 3.16 -519.71 -1.64 -3.47 16 3 C -0.09 -0.30 6.88 40.35 0.28 -0.02 16 4 C 0.58 3.12 7.77 86.45 0.67 3.79 16 5 O -0.59 -8.15 14.12 -4.32 -0.06 -8.21 16 6 N -0.69 2.38 5.34 -443.71 -2.37 0.01 16 7 C 0.12 -0.43 4.27 45.58 0.19 -0.24 16 8 H 0.09 0.26 7.42 -2.39 -0.02 0.24 16 9 C -0.11 1.27 7.40 31.12 0.23 1.50 16 10 C -0.12 1.00 3.96 -10.27 -0.04 0.96 16 11 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 12 C 0.11 -1.20 5.98 86.38 0.52 -0.69 16 13 N -0.45 0.97 2.75 -529.07 -1.46 -0.49 16 14 C -0.05 -0.01 11.58 83.09 0.96 0.95 16 15 C -0.07 -0.45 11.87 83.52 0.99 0.54 16 16 N -0.55 -5.73 11.25 -200.31 -2.25 -7.98 16 17 C 0.18 0.48 12.56 180.26 2.26 2.74 16 18 C -0.14 0.78 7.45 31.18 0.23 1.01 16 19 C -0.12 0.39 10.35 22.57 0.23 0.62 16 20 C -0.20 0.74 9.37 22.01 0.21 0.94 16 21 C 0.00 0.00 6.14 41.34 0.25 0.25 16 22 C -0.07 0.16 2.99 71.24 0.21 0.37 16 23 O -0.55 -0.22 10.11 -148.98 -1.51 -1.73 16 24 Si 0.82 -4.11 31.10 68.60 2.13 -1.98 16 25 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.11 0.19 5.25 -2.39 -0.01 0.18 16 27 H 0.09 0.75 5.92 -2.38 -0.01 0.74 16 28 H 0.42 -4.42 7.63 -92.71 -0.71 -5.12 16 29 H 0.12 -1.98 8.08 -2.39 -0.02 -2.00 16 30 H 0.08 -0.89 8.14 -2.39 -0.02 -0.91 16 31 H 0.12 -1.72 7.87 -2.39 -0.02 -1.74 16 32 H 0.12 -1.57 8.14 -2.39 -0.02 -1.59 16 33 H 0.20 -1.26 8.06 -2.91 -0.02 -1.28 16 34 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 35 H 0.22 -0.84 8.06 -2.91 -0.02 -0.86 16 36 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.11 -0.96 7.92 -2.38 -0.02 -0.97 16 38 H 0.18 -1.98 7.45 -2.91 -0.02 -2.00 16 39 H 0.19 -2.00 6.85 -2.91 -0.02 -2.02 16 40 H 0.13 -0.49 7.96 -2.39 -0.02 -0.51 16 41 H 0.39 -1.58 8.31 -74.05 -0.62 -2.20 16 42 H -0.29 -0.14 7.11 99.48 0.71 0.57 16 43 H -0.30 -0.70 7.11 99.48 0.71 0.01 16 Total: 0.00 -29.60 356.48 1.13 -28.47 By element: Atomic # 1 Polarization: -18.72 SS G_CDS: -0.24 Total: -18.95 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 8.53 Total: 14.34 kcal Atomic # 7 Polarization: -4.21 SS G_CDS: -7.72 Total: -11.93 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -1.57 Total: -9.94 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.13 Total: -1.98 kcal Total: -29.60 1.13 -28.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.214 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds