Wall clock time and date at job start Sun Mar 7 2021 01:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47441 * 2 1 4 4 C 1.50702 * 109.47429 * 120.00375 * 2 1 3 5 5 C 1.38235 * 119.99676 * 64.99793 * 4 2 1 6 6 C 1.38235 * 119.99752 * 180.02562 * 5 4 2 7 7 C 1.38240 * 120.00119 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00153 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47111 * 90.00047 * 8 7 6 10 10 O 1.21281 * 119.99922 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99749 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99525 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.91148 * 23.75262 * 12 11 9 14 14 C 1.53786 * 113.61370 * 155.00031 * 12 11 9 15 15 C 1.53781 * 87.17350 * 140.02367 * 14 12 11 16 16 H 1.09003 * 113.61462 * 89.16045 * 15 14 12 17 17 C 1.52991 * 113.61529 * 219.97788 * 15 14 12 18 18 N 1.46508 * 109.47429 * 184.99923 * 17 15 14 19 19 C 1.36875 * 126.39229 * 90.00050 * 18 17 15 20 20 C 1.34670 * 106.81308 * 180.02562 * 19 18 17 21 21 N 1.34124 * 108.02291 * 359.97438 * 20 19 18 22 22 C 1.30503 * 109.25305 * 359.72773 * 21 20 19 23 23 C 1.53781 * 87.08070 * 334.52830 * 15 14 12 24 24 C 1.38242 * 119.99775 * 0.25553 * 7 6 5 25 25 C 1.38226 * 119.99761 * 245.01984 * 4 2 1 26 26 H 0.96701 * 113.99549 * 299.99317 * 1 2 3 27 27 H 1.09005 * 109.46774 * 239.99758 * 2 1 3 28 28 H 1.48498 * 109.99946 * 300.00679 * 3 2 1 29 29 H 1.48498 * 109.99685 * 61.32179 * 3 2 1 30 30 H 1.07997 * 120.00585 * 359.97438 * 5 4 2 31 31 H 1.07998 * 120.00127 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47391 * 330.00244 * 8 7 6 33 33 H 1.09005 * 109.47262 * 209.99980 * 8 7 6 34 34 H 0.97000 * 119.99938 * 359.97438 * 11 9 8 35 35 H 1.09002 * 113.61357 * 25.43283 * 14 12 11 36 36 H 1.09002 * 113.61608 * 254.61445 * 14 12 11 37 37 H 1.08997 * 109.47550 * 304.99814 * 17 15 14 38 38 H 1.09002 * 109.47334 * 65.00084 * 17 15 14 39 39 H 1.07997 * 126.60178 * 0.03448 * 19 18 17 40 40 H 1.08008 * 125.99120 * 179.97438 * 20 19 18 41 41 H 1.08001 * 125.64870 * 180.29125 * 22 21 20 42 42 H 1.09005 * 113.61471 * 139.98321 * 23 15 14 43 43 H 1.08996 * 113.61178 * 270.79663 * 23 15 14 44 44 H 1.07995 * 119.99872 * 179.72703 * 24 7 6 45 45 H 1.07999 * 120.00590 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.6848 -2.0603 1.3982 6 6 2.1452 -2.7119 2.5270 7 6 2.8517 -2.0136 3.4884 8 6 3.3531 -2.7238 4.7193 9 6 4.7349 -3.2659 4.4587 10 8 5.2606 -3.0929 3.3794 11 7 5.3865 -3.9429 5.4249 12 6 6.7295 -4.4703 5.1713 13 1 7.2530 -3.9351 4.3791 14 6 7.5686 -4.6579 6.4464 15 6 8.0799 -5.9686 5.8256 16 1 8.9726 -5.8426 5.2131 17 6 8.2064 -7.1146 6.8313 18 7 8.8097 -8.2768 6.1742 19 6 10.1461 -8.5613 6.0937 20 6 10.2581 -9.7148 5.4079 21 7 9.0238 -10.1237 5.0791 22 6 8.1507 -9.2704 5.5402 23 6 6.7737 -6.0021 5.0146 24 6 3.0933 -0.6625 3.3233 25 6 2.6384 -0.0123 2.1913 26 1 -0.3933 0.4416 0.7651 27 1 1.7923 -0.5139 -0.8900 28 1 1.5615 2.4679 -1.2084 29 1 1.5880 2.4584 1.2243 30 1 1.1317 -2.6056 0.6478 31 1 1.9521 -3.7663 2.6584 32 1 2.6805 -3.5459 4.9638 33 1 3.3891 -2.0233 5.5537 34 1 4.9662 -4.0808 6.2882 35 1 6.9699 -4.8048 7.3453 36 1 8.3446 -3.9030 6.5734 37 1 8.8364 -6.8000 7.6633 38 1 7.2176 -7.3811 7.2049 39 1 10.9552 -7.9739 6.5018 40 1 11.1804 -10.2219 5.1651 41 1 7.0789 -9.3449 5.4302 42 1 6.9078 -6.3321 3.9844 43 1 5.9582 -6.5179 5.5215 44 1 3.6415 -0.1160 4.0764 45 1 2.8305 1.0424 2.0606 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:25:58 Heat of formation + Delta-G solvation = 50.750911 kcal Electronic energy + Delta-G solvation = -26313.021755 eV Core-core repulsion = 22491.962187 eV Total energy + Delta-G solvation = -3821.059568 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.93568 -41.33350 -40.50257 -39.37789 -37.76844 -35.36856 -34.22515 -33.70944 -31.94357 -30.40906 -29.93211 -28.56658 -26.70121 -25.92747 -23.99633 -23.82789 -22.26224 -22.23638 -21.67142 -21.40018 -20.55848 -18.59650 -18.46288 -18.01519 -17.45390 -16.97549 -16.62438 -16.33104 -16.28080 -16.14089 -15.85937 -15.57667 -15.30152 -14.93628 -14.83566 -14.75659 -14.49873 -14.27341 -14.05826 -14.00201 -13.49208 -13.41517 -13.25772 -13.18751 -12.88970 -12.81421 -12.29358 -12.20490 -12.00305 -11.94427 -11.61183 -11.46331 -10.94194 -10.89702 -10.61882 -10.47600 -9.99783 -9.88134 -9.63191 -9.43627 -4.94491 0.23329 0.44765 1.16525 1.27959 1.55041 1.65068 1.90137 1.93919 2.22098 2.24737 2.78691 3.39731 3.40780 3.50199 3.61171 3.72266 3.77710 3.78910 3.89583 3.90192 4.03311 4.04882 4.09395 4.13358 4.25377 4.35659 4.45655 4.46900 4.54198 4.61933 4.62213 4.71891 4.72972 4.75920 4.80493 4.83191 4.98642 5.02275 5.05055 5.08127 5.25397 5.37136 5.37625 5.52792 5.58516 5.61076 5.84089 6.01408 6.33531 6.45815 6.60419 7.17612 7.31811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.085 4.085 3 Si 0.764 3.236 4 C -0.125 4.125 5 C -0.108 4.108 6 C -0.117 4.117 7 C -0.071 4.071 8 C -0.098 4.098 9 C 0.512 3.488 10 O -0.581 6.581 11 N -0.707 5.707 12 C 0.116 3.884 13 H 0.084 0.916 14 C -0.115 4.115 15 C -0.118 4.118 16 H 0.084 0.916 17 C 0.115 3.885 18 N -0.453 5.453 19 C -0.049 4.049 20 C -0.068 4.068 21 N -0.548 5.548 22 C 0.175 3.825 23 C -0.146 4.146 24 C -0.111 4.111 25 C -0.125 4.125 26 H 0.386 0.614 27 H 0.117 0.883 28 H -0.302 1.302 29 H -0.276 1.276 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.420 0.580 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.200 0.800 40 H 0.171 0.829 41 H 0.224 0.776 42 H 0.046 0.954 43 H 0.106 0.894 44 H 0.142 0.858 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 3.242 10.253 10.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.194 4.194 3 Si 0.669 3.331 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.135 4.135 7 C -0.072 4.072 8 C -0.138 4.138 9 C 0.300 3.700 10 O -0.460 6.460 11 N -0.359 5.359 12 C 0.011 3.989 13 H 0.103 0.897 14 C -0.154 4.154 15 C -0.138 4.138 16 H 0.102 0.898 17 C -0.007 4.007 18 N -0.135 5.135 19 C -0.182 4.182 20 C -0.214 4.214 21 N -0.267 5.267 22 C -0.107 4.107 23 C -0.184 4.184 24 C -0.128 4.128 25 C -0.143 4.143 26 H 0.235 0.765 27 H 0.135 0.865 28 H -0.230 1.230 29 H -0.203 1.203 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.258 0.742 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.217 0.783 40 H 0.188 0.812 41 H 0.240 0.760 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.160 0.840 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.300 3.299 8.592 9.208 hybrid contribution -0.932 0.216 0.574 1.115 sum -0.631 3.516 9.165 9.837 Atomic orbital electron populations 1.86566 1.18484 1.80466 1.50132 1.25234 0.83471 1.12070 0.98613 0.93924 0.90587 0.71992 0.76568 1.20316 1.00258 0.95010 0.96991 1.21106 0.99375 0.94222 0.97959 1.21244 0.98122 1.00247 0.93882 1.19616 0.97345 0.93981 0.96221 1.20770 0.92859 1.02790 0.97344 1.21046 0.88087 0.77138 0.83745 1.90752 1.69584 1.59299 1.26394 1.45851 1.17184 1.55896 1.16970 1.22406 0.83479 0.93662 0.99400 0.89743 1.23289 0.99223 0.95713 0.97176 1.22641 0.98089 0.95294 0.97796 0.89801 1.22202 1.01467 0.82043 0.94942 1.45760 1.06381 1.19887 1.41434 1.23152 0.86826 1.00848 1.07414 1.22634 0.96189 0.97798 1.04829 1.70237 1.01540 1.30168 1.24755 1.25407 1.00422 0.86665 0.98253 1.23628 0.98015 0.96466 1.00319 1.21238 0.99170 0.94336 0.98103 1.21201 0.98538 1.00299 0.94219 0.76505 0.86486 1.23022 1.20256 0.85990 0.85087 0.85332 0.84848 0.74207 0.86187 0.89887 0.86782 0.86376 0.78271 0.81171 0.76008 0.93525 0.87528 0.84005 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.66 12.83 -148.98 -1.91 -4.57 16 2 C -0.09 -0.21 2.80 71.24 0.20 -0.01 16 3 Si 0.76 0.20 29.88 68.60 2.05 2.25 16 4 C -0.13 -0.42 5.35 -19.87 -0.11 -0.53 16 5 C -0.11 -0.48 9.69 22.27 0.22 -0.27 16 6 C -0.12 -0.30 9.70 22.27 0.22 -0.09 16 7 C -0.07 -0.03 4.37 -19.86 -0.09 -0.12 16 8 C -0.10 0.66 5.83 29.10 0.17 0.83 16 9 C 0.51 -0.52 7.82 87.66 0.69 0.16 16 10 O -0.58 -5.94 15.64 -3.03 -0.05 -5.98 16 11 N -0.71 5.49 5.36 -439.60 -2.36 3.14 16 12 C 0.12 -0.65 4.25 45.61 0.19 -0.46 16 13 H 0.08 0.13 7.47 -2.39 -0.02 0.11 16 14 C -0.12 1.40 7.39 31.12 0.23 1.63 16 15 C -0.12 1.08 3.96 -10.27 -0.04 1.04 16 16 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 17 C 0.11 -1.23 5.99 86.37 0.52 -0.72 16 18 N -0.45 1.06 2.75 -529.08 -1.46 -0.40 16 19 C -0.05 -0.01 11.58 83.09 0.96 0.96 16 20 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 21 N -0.55 -5.61 11.25 -200.31 -2.25 -7.86 16 22 C 0.18 0.43 12.56 180.26 2.26 2.70 16 23 C -0.15 0.94 7.44 31.21 0.23 1.17 16 24 C -0.11 -0.06 9.70 22.27 0.22 0.15 16 25 C -0.13 -0.19 8.67 22.27 0.19 0.00 16 26 H 0.39 -0.47 8.70 -74.06 -0.64 -1.11 16 27 H 0.12 0.23 7.96 -2.38 -0.02 0.21 16 28 H -0.30 -2.32 7.11 99.48 0.71 -1.61 16 29 H -0.28 -0.77 7.01 99.48 0.70 -0.07 16 30 H 0.12 0.48 8.06 -2.91 -0.02 0.46 16 31 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 32 H 0.13 -1.48 8.09 -2.39 -0.02 -1.50 16 33 H 0.13 -1.65 8.08 -2.38 -0.02 -1.67 16 34 H 0.42 -6.41 8.73 -92.71 -0.81 -7.22 16 35 H 0.12 -2.07 8.08 -2.39 -0.02 -2.09 16 36 H 0.08 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.11 -1.57 8.14 -2.39 -0.02 -1.59 16 38 H 0.12 -1.74 7.84 -2.39 -0.02 -1.76 16 39 H 0.20 -1.29 8.06 -2.91 -0.02 -1.31 16 40 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 41 H 0.22 -0.91 8.06 -2.91 -0.02 -0.94 16 42 H 0.05 0.00 8.14 -2.38 -0.02 -0.02 16 43 H 0.11 -1.08 7.89 -2.39 -0.02 -1.10 16 44 H 0.14 -0.55 8.06 -2.91 -0.02 -0.58 16 45 H 0.14 -0.29 4.85 -2.91 -0.01 -0.30 16 Total: 0.00 -30.04 379.41 0.66 -29.38 By element: Atomic # 1 Polarization: -22.57 SS G_CDS: -0.41 Total: -22.99 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 7.05 Total: 7.03 kcal Atomic # 7 Polarization: 0.94 SS G_CDS: -6.07 Total: -5.12 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -1.96 Total: -10.55 kcal Atomic # 14 Polarization: 0.20 SS G_CDS: 2.05 Total: 2.25 kcal Total: -30.04 0.66 -29.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.130 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds