Wall clock time and date at job start Sun Mar 7 2021 01:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86303 * 109.46872 * 2 1 4 4 C 1.50703 * 109.47106 * 119.99402 * 2 1 3 5 5 C 1.34458 * 126.48411 * 255.04477 * 4 2 1 6 6 N 1.36564 * 109.98179 * 179.97438 * 5 4 2 7 7 C 1.37826 * 109.86426 * 359.97438 * 6 5 4 8 8 C 1.38642 * 133.38249 * 180.28379 * 7 6 5 9 9 C 1.39316 * 119.66550 * 180.19377 * 8 7 6 10 10 C 1.47578 * 119.82928 * 179.76918 * 9 8 7 11 11 O 1.21591 * 120.00384 * 359.72687 * 10 9 8 12 12 N 1.34783 * 120.00079 * 179.72867 * 10 9 8 13 13 C 1.46497 * 120.00411 * 180.02562 * 12 10 9 14 14 H 1.08999 * 112.90332 * 23.74627 * 13 12 10 15 15 C 1.53779 * 113.61407 * 154.99736 * 13 12 10 16 16 C 1.53789 * 87.07725 * 139.98090 * 15 13 12 17 17 H 1.08997 * 113.61132 * 89.20370 * 16 15 13 18 18 C 1.52997 * 113.61182 * 220.01690 * 16 15 13 19 19 N 1.46504 * 109.47004 * 183.47119 * 18 16 15 20 20 C 1.36876 * 126.40093 * 270.32059 * 19 18 16 21 21 C 1.34665 * 106.82156 * 180.12098 * 20 19 18 22 22 N 1.34127 * 108.01668 * 359.58498 * 21 20 19 23 23 C 1.30500 * 109.25894 * 0.26753 * 22 21 20 24 24 C 1.53777 * 87.17423 * 334.60930 * 16 15 13 25 25 C 1.40198 * 120.33717 * 359.49790 * 9 8 7 26 26 C 1.36229 * 120.37931 * 0.24446 * 25 9 8 27 27 C 1.39876 * 119.95718 * 0.02562 * 26 25 9 28 28 H 0.96695 * 114.00095 * 60.00590 * 1 2 3 29 29 H 1.08997 * 109.47582 * 240.00047 * 2 1 3 30 30 H 1.48504 * 109.99718 * 298.67994 * 3 2 1 31 31 H 1.48500 * 110.00050 * 59.99688 * 3 2 1 32 32 H 1.07996 * 125.00519 * 359.94525 * 5 4 2 33 33 H 0.97003 * 125.06366 * 179.97438 * 6 5 4 34 34 H 1.08002 * 120.16903 * 359.94535 * 8 7 6 35 35 H 0.97004 * 119.99732 * 0.02562 * 12 10 9 36 36 H 1.08999 * 113.61812 * 25.43447 * 15 13 12 37 37 H 1.08997 * 113.61258 * 254.52468 * 15 13 12 38 38 H 1.08997 * 109.47636 * 63.47398 * 18 16 15 39 39 H 1.09003 * 109.47241 * 303.46748 * 18 16 15 40 40 H 1.08002 * 126.59064 * 0.02562 * 20 19 18 41 41 H 1.08002 * 125.99463 * 179.85418 * 21 20 19 42 42 H 1.07994 * 125.65001 * 179.97438 * 23 22 21 43 43 H 1.08995 * 113.61510 * 139.93947 * 24 16 15 44 44 H 1.09000 * 113.61476 * 270.84338 * 24 16 15 45 45 H 1.08003 * 119.80784 * 180.27369 * 25 9 8 46 46 H 1.07998 * 120.02342 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.4608 -0.1360 2.3250 6 7 2.8024 -1.0944 3.2359 7 6 2.4937 -2.3429 2.7403 8 6 2.6253 -3.6273 3.2455 9 6 2.2128 -4.7152 2.4792 10 6 2.3560 -6.0843 3.0113 11 8 2.8375 -6.2608 4.1138 12 7 1.9530 -7.1390 2.2752 13 6 2.0946 -8.4980 2.8036 14 1 2.1359 -8.5276 3.8924 15 6 1.0995 -9.5014 2.1972 16 6 2.2550 -10.5161 2.1789 17 1 2.3392 -11.0986 3.0963 18 6 2.2888 -11.3837 0.9191 19 7 3.3679 -12.3680 1.0329 20 6 4.6655 -12.2009 0.6308 21 6 5.3130 -13.3463 0.9174 22 7 4.4367 -14.1866 1.4875 23 6 3.2695 -13.6075 1.5599 24 6 3.2103 -9.3123 2.1236 25 6 1.6572 -4.5157 1.2076 26 6 1.5193 -3.2568 0.7058 27 6 1.9340 -2.1546 1.4607 28 1 -0.3933 0.4416 -0.7650 29 1 1.7924 -0.5138 -0.8899 30 1 1.5877 2.4585 -1.2243 31 1 1.5613 2.4679 1.2084 32 1 2.5965 0.9264 2.4630 33 1 3.2026 -0.9221 4.1026 34 1 3.0492 -3.7839 4.2264 35 1 1.5692 -6.9981 1.3955 36 1 0.7480 -9.2219 1.2040 37 1 0.2890 -9.7749 2.8727 38 1 2.4632 -10.7525 0.0477 39 1 1.3356 -11.9007 0.8083 40 1 5.0885 -11.3201 0.1705 41 1 6.3560 -13.5509 0.7260 42 1 2.3734 -14.0467 1.9726 43 1 4.1013 -9.4333 2.7397 44 1 3.4370 -8.9809 1.1102 45 1 1.3362 -5.3650 0.6227 46 1 1.0901 -3.1097 -0.2743 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:26:01 Heat of formation + Delta-G solvation = 90.907214 kcal Electronic energy + Delta-G solvation = -29316.610463 eV Core-core repulsion = 25175.414011 eV Total energy + Delta-G solvation = -4141.196452 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.92476 -42.45757 -41.23130 -39.64526 -37.89527 -37.52238 -35.45157 -34.01054 -33.35904 -30.81769 -30.69861 -30.35885 -28.65784 -26.73234 -26.47307 -25.30359 -23.64839 -23.44457 -22.24553 -21.77965 -21.51187 -20.75794 -20.48990 -19.22678 -18.49645 -18.43248 -18.12945 -17.50690 -17.14110 -16.45108 -16.21884 -16.12086 -15.83901 -15.55683 -15.38633 -15.14493 -15.00917 -14.88200 -14.78699 -14.77073 -14.45782 -14.23717 -14.13020 -13.84944 -13.52477 -13.42439 -13.15890 -12.91231 -12.65752 -12.58626 -12.28750 -12.17870 -11.95585 -11.86616 -11.45163 -11.10291 -10.89644 -10.77838 -10.46741 -10.33172 -10.11877 -9.42251 -9.36493 -8.80235 -4.85297 -0.32923 0.37913 1.17883 1.34764 1.39123 1.65277 1.85666 1.90760 1.97216 2.01484 2.25265 2.27170 2.85902 3.39005 3.48707 3.55989 3.59667 3.70402 3.72075 3.78618 3.84120 3.91713 4.04472 4.05147 4.10590 4.17958 4.22539 4.29376 4.37404 4.44352 4.53221 4.58895 4.61397 4.71323 4.73972 4.78850 4.81152 4.83045 4.96827 4.97599 5.04062 5.18150 5.22513 5.38580 5.41215 5.48414 5.56856 5.61224 5.85217 5.97948 6.34937 6.47876 6.50786 6.70911 7.14696 7.18786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.049 4.049 3 Si 0.767 3.233 4 C -0.189 4.189 5 C 0.087 3.913 6 N -0.578 5.578 7 C 0.066 3.934 8 C -0.070 4.070 9 C -0.136 4.136 10 C 0.561 3.439 11 O -0.586 6.586 12 N -0.698 5.698 13 C 0.113 3.887 14 H 0.088 0.912 15 C -0.116 4.116 16 C -0.116 4.116 17 H 0.088 0.912 18 C 0.115 3.885 19 N -0.452 5.452 20 C -0.045 4.045 21 C -0.069 4.069 22 N -0.547 5.547 23 C 0.173 3.827 24 C -0.143 4.143 25 C -0.105 4.105 26 C -0.082 4.082 27 C -0.081 4.081 28 H 0.391 0.609 29 H 0.086 0.914 30 H -0.290 1.290 31 H -0.288 1.288 32 H 0.202 0.798 33 H 0.434 0.566 34 H 0.126 0.874 35 H 0.417 0.583 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.197 0.803 41 H 0.170 0.830 42 H 0.228 0.772 43 H 0.050 0.950 44 H 0.104 0.896 45 H 0.158 0.842 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.479 5.805 -6.444 9.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.157 4.157 3 Si 0.671 3.329 4 C -0.196 4.196 5 C -0.043 4.043 6 N -0.181 5.181 7 C -0.041 4.041 8 C -0.091 4.091 9 C -0.140 4.140 10 C 0.350 3.650 11 O -0.468 6.468 12 N -0.350 5.350 13 C 0.008 3.992 14 H 0.107 0.893 15 C -0.155 4.155 16 C -0.136 4.136 17 H 0.106 0.894 18 C -0.007 4.007 19 N -0.134 5.134 20 C -0.178 4.178 21 C -0.215 4.215 22 N -0.266 5.266 23 C -0.110 4.110 24 C -0.182 4.182 25 C -0.124 4.124 26 C -0.100 4.100 27 C -0.086 4.086 28 H 0.241 0.759 29 H 0.104 0.896 30 H -0.217 1.217 31 H -0.215 1.215 32 H 0.219 0.781 33 H 0.274 0.726 34 H 0.144 0.856 35 H 0.256 0.744 36 H 0.138 0.862 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.213 0.787 41 H 0.187 0.813 42 H 0.244 0.756 43 H 0.069 0.931 44 H 0.122 0.878 45 H 0.176 0.824 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.145 5.529 -4.752 7.600 hybrid contribution -0.961 0.737 -0.215 1.230 sum -3.106 6.266 -4.968 8.578 Atomic orbital electron populations 1.86591 1.19210 1.80585 1.50751 1.24282 0.83331 1.11126 0.97003 0.94231 0.90096 0.71591 0.77001 1.19802 1.10574 0.91166 0.98083 1.22198 0.98393 0.95415 0.88253 1.41775 1.54348 1.03382 1.18643 1.18146 1.03978 0.86758 0.95172 1.20136 1.00075 0.88845 1.00044 1.19486 1.06106 0.91671 0.96785 1.18434 0.76810 0.85588 0.84151 1.90770 1.46749 1.86880 1.22382 1.45738 1.63031 1.05145 1.21055 1.22546 0.98085 0.79628 0.98980 0.89337 1.23309 0.96058 0.92590 1.03514 1.22648 0.97734 0.94678 0.98558 0.89354 1.22192 0.89539 0.90075 0.98847 1.45750 1.09663 1.13618 1.44378 1.23070 0.84738 1.02247 1.07786 1.22612 1.00633 0.92280 1.06016 1.70235 1.01745 1.33690 1.20933 1.25509 0.99197 0.83882 1.02404 1.23591 0.97128 0.95353 1.02148 1.20921 0.99412 0.98178 0.93919 1.20431 0.98822 0.90489 1.00257 1.19569 1.01030 0.94097 0.93936 0.75900 0.89621 1.21677 1.21530 0.78132 0.72590 0.85605 0.74365 0.86225 0.89528 0.86787 0.86253 0.78654 0.81279 0.75615 0.93111 0.87764 0.82444 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.68 12.86 -148.98 -1.92 -2.59 16 2 C -0.05 0.10 3.05 71.24 0.22 0.31 16 3 Si 0.77 -3.69 30.79 68.60 2.11 -1.58 16 4 C -0.19 -0.25 5.60 -18.64 -0.10 -0.35 16 5 C 0.09 -0.17 10.43 83.09 0.87 0.69 16 6 N -0.58 0.71 6.07 -187.72 -1.14 -0.43 16 7 C 0.07 0.26 7.26 38.96 0.28 0.55 16 8 C -0.07 -0.40 9.61 22.63 0.22 -0.18 16 9 C -0.14 -0.53 5.87 -20.08 -0.12 -0.65 16 10 C 0.56 3.27 7.76 86.71 0.67 3.95 16 11 O -0.59 -8.70 15.91 -4.00 -0.06 -8.76 16 12 N -0.70 1.83 5.31 -442.87 -2.35 -0.52 16 13 C 0.11 -0.33 4.24 45.58 0.19 -0.14 16 14 H 0.09 0.31 7.47 -2.39 -0.02 0.29 16 15 C -0.12 1.19 7.40 31.12 0.23 1.42 16 16 C -0.12 0.94 3.96 -10.27 -0.04 0.90 16 17 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 18 C 0.11 -1.14 5.97 86.38 0.52 -0.63 16 19 N -0.45 0.83 2.75 -529.07 -1.46 -0.63 16 20 C -0.04 -0.03 11.58 83.09 0.96 0.93 16 21 C -0.07 -0.48 11.87 83.52 0.99 0.51 16 22 N -0.55 -5.76 11.25 -200.32 -2.25 -8.01 16 23 C 0.17 0.47 12.56 180.26 2.26 2.74 16 24 C -0.14 0.68 7.45 31.18 0.23 0.91 16 25 C -0.10 0.15 9.46 22.28 0.21 0.36 16 26 C -0.08 -0.05 10.03 22.20 0.22 0.17 16 27 C -0.08 -0.32 6.35 -20.14 -0.13 -0.44 16 28 H 0.39 -2.67 8.74 -74.06 -0.65 -3.32 16 29 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 30 H -0.29 -0.04 7.11 99.48 0.71 0.67 16 31 H -0.29 -0.20 7.04 99.48 0.70 0.50 16 32 H 0.20 -1.63 6.30 -2.91 -0.02 -1.65 16 33 H 0.43 -2.95 8.96 -92.71 -0.83 -3.79 16 34 H 0.13 0.84 7.62 -2.91 -0.02 0.81 16 35 H 0.42 -3.99 6.72 -92.71 -0.62 -4.61 16 36 H 0.12 -1.83 8.08 -2.39 -0.02 -1.85 16 37 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.11 -1.52 7.87 -2.39 -0.02 -1.54 16 39 H 0.12 -1.62 8.14 -2.39 -0.02 -1.64 16 40 H 0.20 -1.04 8.06 -2.91 -0.02 -1.06 16 41 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.23 -0.97 8.06 -2.91 -0.02 -0.99 16 43 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.10 -0.83 7.92 -2.39 -0.02 -0.85 16 45 H 0.16 -1.46 6.36 -2.91 -0.02 -1.48 16 46 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 Total: 0.00 -33.06 388.33 -0.39 -33.45 By element: Atomic # 1 Polarization: -20.95 SS G_CDS: -1.02 Total: -21.97 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 7.69 Total: 11.05 kcal Atomic # 7 Polarization: -2.39 SS G_CDS: -7.20 Total: -9.59 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.98 Total: -11.36 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: 2.11 Total: -1.58 kcal Total: -33.06 -0.39 -33.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.356 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds