Wall clock time and date at job start Sun Mar 7 2021 01:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86302 * 109.46929 * 2 1 4 4 C 1.50701 * 109.46996 * 119.99602 * 2 1 3 5 5 C 1.38186 * 119.84454 * 255.02315 * 4 2 1 6 6 C 1.38313 * 120.14535 * 179.72641 * 5 4 2 7 7 F 1.35099 * 120.08937 * 180.28100 * 6 5 4 8 8 C 1.39808 * 119.82985 * 0.52558 * 6 5 4 9 9 C 1.47699 * 120.15693 * 179.74864 * 8 6 5 10 10 O 1.21566 * 119.99852 * 359.72820 * 9 8 6 11 11 N 1.34769 * 120.00242 * 179.72673 * 9 8 6 12 12 C 1.46497 * 120.00274 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.90477 * 336.24972 * 12 11 9 14 14 C 1.53779 * 113.61581 * 107.50145 * 12 11 9 15 15 C 1.53779 * 87.08402 * 139.98450 * 14 12 11 16 16 H 1.09000 * 113.61527 * 89.11480 * 15 14 12 17 17 C 1.53005 * 113.69064 * 220.00975 * 15 14 12 18 18 N 1.46499 * 109.46872 * 272.52979 * 17 15 14 19 19 C 1.36870 * 126.39918 * 269.71291 * 18 17 15 20 20 C 1.34672 * 106.81802 * 179.84735 * 19 18 17 21 21 N 1.34126 * 108.01702 * 0.41858 * 20 19 18 22 22 C 1.30494 * 109.25617 * 359.73817 * 21 20 19 23 23 C 1.53784 * 113.61569 * 204.99925 * 12 11 9 24 24 C 1.39661 * 119.69012 * 359.47648 * 8 6 5 25 25 C 1.38070 * 119.85090 * 0.25479 * 24 8 6 26 26 F 1.35104 * 119.91635 * 179.97438 * 25 24 8 27 27 H 0.96705 * 114.00329 * 60.00320 * 1 2 3 28 28 H 1.08993 * 109.47324 * 240.00102 * 2 1 3 29 29 H 1.48496 * 110.00177 * 298.68048 * 3 2 1 30 30 H 1.48500 * 109.99949 * 60.00103 * 3 2 1 31 31 H 1.08003 * 119.92957 * 359.97438 * 5 4 2 32 32 H 0.97009 * 120.00192 * 0.02562 * 11 9 8 33 33 H 1.09006 * 113.61307 * 25.43652 * 14 12 11 34 34 H 1.08999 * 113.69146 * 254.54138 * 14 12 11 35 35 H 1.08995 * 109.46809 * 32.53527 * 17 15 14 36 36 H 1.09006 * 109.46737 * 152.53023 * 17 15 14 37 37 H 1.08007 * 126.59396 * 359.97438 * 19 18 17 38 38 H 1.08006 * 125.98956 * 180.12315 * 20 19 18 39 39 H 1.08007 * 125.64769 * 179.97438 * 22 21 20 40 40 H 1.09004 * 113.61451 * 105.47149 * 23 12 11 41 41 H 1.08994 * 113.61477 * 334.56451 * 23 12 11 42 42 H 1.07997 * 120.07264 * 180.22211 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9312 -0.7103 1.2305 5 6 2.4525 0.0199 2.2815 6 6 2.9101 -0.6252 3.4161 7 9 3.4142 0.0902 4.4453 8 6 2.8542 -2.0201 3.4933 9 6 3.3460 -2.7168 4.6992 10 8 3.8052 -2.0776 5.6257 11 7 3.2856 -4.0611 4.7725 12 6 3.7729 -4.7521 5.9689 13 1 4.5064 -4.1695 6.5262 14 6 2.6502 -5.3306 6.8463 15 6 3.5507 -6.5603 7.0506 16 1 4.2235 -6.4720 7.9037 17 6 2.7918 -7.8887 7.0275 18 7 2.3053 -8.1966 8.3746 19 6 2.9699 -8.9108 9.3346 20 6 2.1672 -8.9519 10.4152 21 7 1.0393 -8.2890 10.1197 22 6 1.1149 -7.8338 8.8990 23 6 4.2090 -6.2035 5.7073 24 6 2.3261 -2.7513 2.4270 25 6 1.8678 -2.0936 1.3028 26 9 1.3571 -2.7996 0.2704 27 1 -0.3934 0.4417 -0.7651 28 1 1.7923 -0.5138 -0.8899 29 1 1.5878 2.4586 -1.2242 30 1 1.5613 2.4679 1.2085 31 1 2.4990 1.0971 2.2185 32 1 2.9196 -4.5713 4.0331 33 1 1.7340 -5.5468 6.2968 34 1 2.4721 -4.7633 7.7599 35 1 1.9460 -7.8119 6.3443 36 1 3.4591 -8.6825 6.6918 37 1 3.9505 -9.3542 9.2438 38 1 2.3904 -9.4381 11.3535 39 1 0.3517 -7.2620 8.3920 40 1 5.2904 -6.3401 5.7011 41 1 3.7189 -6.6583 4.8465 42 1 2.2767 -3.8287 2.4815 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:26:35 Heat of formation + Delta-G solvation = -23.995715 kcal Electronic energy + Delta-G solvation = -29725.173587 eV Core-core repulsion = 25117.502429 eV Total energy + Delta-G solvation = -4607.671158 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.123 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.13559 -50.10276 -42.93788 -41.55542 -40.31227 -39.34941 -37.77725 -35.55295 -34.34703 -33.10925 -31.40623 -30.38468 -28.98259 -27.75640 -26.72691 -24.72126 -24.39794 -23.17868 -22.25998 -21.97005 -21.64443 -20.85862 -19.46148 -18.80790 -18.72215 -18.45932 -18.32354 -17.50254 -17.16520 -17.10583 -16.53282 -16.34599 -16.23774 -16.00904 -15.90543 -15.65185 -15.53083 -15.34573 -15.18974 -14.82840 -14.53766 -14.28476 -14.07083 -14.00040 -13.74934 -13.61936 -13.50749 -13.41835 -13.13333 -12.93408 -12.40778 -12.26213 -12.00662 -11.95978 -11.50320 -11.20940 -10.89725 -10.64718 -10.61458 -10.48621 -10.16587 -9.83148 -9.43415 -4.98648 -0.82799 -0.31978 1.13973 1.16495 1.35331 1.53882 1.83722 1.87494 1.97177 2.20878 2.24438 2.74263 2.83100 3.05378 3.30346 3.37657 3.42915 3.47204 3.62858 3.69380 3.73183 3.77550 3.89686 4.08597 4.11806 4.12970 4.20357 4.30060 4.32740 4.43350 4.54771 4.62163 4.67176 4.70942 4.71448 4.74727 4.78881 4.82679 4.94578 5.04081 5.12965 5.35990 5.36798 5.49574 5.84332 6.31489 6.34082 6.47624 6.99655 7.17830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.090 4.090 3 Si 0.765 3.235 4 C -0.055 4.055 5 C -0.133 4.133 6 C 0.137 3.863 7 F -0.126 7.126 8 C -0.148 4.148 9 C 0.558 3.442 10 O -0.565 6.565 11 N -0.693 5.693 12 C 0.114 3.886 13 H 0.092 0.908 14 C -0.147 4.147 15 C -0.117 4.117 16 H 0.087 0.913 17 C 0.114 3.886 18 N -0.453 5.453 19 C -0.047 4.047 20 C -0.068 4.068 21 N -0.548 5.548 22 C 0.175 3.825 23 C -0.114 4.114 24 C -0.073 4.073 25 C 0.104 3.896 26 F -0.125 7.125 27 H 0.402 0.598 28 H 0.107 0.893 29 H -0.275 1.275 30 H -0.291 1.291 31 H 0.164 0.836 32 H 0.419 0.581 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.201 0.799 38 H 0.171 0.829 39 H 0.223 0.777 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.507 -3.794 -10.176 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.198 4.198 3 Si 0.668 3.332 4 C -0.057 4.057 5 C -0.151 4.151 6 C 0.116 3.884 7 F -0.104 7.104 8 C -0.152 4.152 9 C 0.345 3.655 10 O -0.444 6.444 11 N -0.345 5.345 12 C 0.009 3.991 13 H 0.110 0.890 14 C -0.186 4.186 15 C -0.137 4.137 16 H 0.105 0.895 17 C -0.007 4.007 18 N -0.135 5.135 19 C -0.181 4.181 20 C -0.215 4.215 21 N -0.267 5.267 22 C -0.108 4.108 23 C -0.153 4.153 24 C -0.092 4.092 25 C 0.085 3.915 26 F -0.103 7.103 27 H 0.253 0.747 28 H 0.124 0.876 29 H -0.202 1.202 30 H -0.218 1.218 31 H 0.181 0.819 32 H 0.258 0.742 33 H 0.126 0.874 34 H 0.069 0.931 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.218 0.782 38 H 0.188 0.812 39 H 0.239 0.761 40 H 0.106 0.894 41 H 0.140 0.860 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.110 -2.717 -8.603 9.543 hybrid contribution -0.729 -0.022 -0.748 1.045 sum 2.381 -2.738 -9.351 10.030 Atomic orbital electron populations 1.86535 1.17444 1.80945 1.51446 1.24955 0.85032 1.12436 0.97366 0.93980 0.90185 0.71643 0.77360 1.19496 0.97942 0.92264 0.95953 1.21038 1.00699 1.02127 0.91224 1.17798 0.96440 0.88699 0.85426 1.91597 1.84135 1.77697 1.56952 1.19843 1.06455 0.92128 0.96806 1.18091 0.78223 0.83408 0.85747 1.90874 1.46689 1.66991 1.39835 1.45711 1.62929 1.05001 1.20892 1.22554 0.97221 0.92984 0.86315 0.89002 1.23617 0.98628 0.96534 0.99830 1.22641 0.98232 0.93348 0.99448 0.89481 1.22209 1.01076 0.97732 0.79688 1.45756 1.14485 1.39453 1.13760 1.23159 1.01574 1.03438 0.89947 1.22636 0.92187 1.05790 1.00903 1.70232 1.25773 1.15846 1.14886 1.25395 0.90373 1.03629 0.91388 1.23318 1.02615 0.92040 0.97303 1.21359 0.95682 1.02528 0.89633 1.17315 0.99149 0.88815 0.86264 1.91565 1.84477 1.78027 1.56237 0.74688 0.87557 1.20152 1.21835 0.81857 0.74190 0.87444 0.93140 0.86379 0.86585 0.78186 0.81192 0.76084 0.89362 0.85969 0.79465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.53 12.86 -148.98 -1.92 -1.38 16 2 C -0.09 0.35 2.43 71.24 0.17 0.52 16 3 Si 0.76 -3.78 30.19 68.60 2.07 -1.71 16 4 C -0.06 0.07 5.30 -19.78 -0.10 -0.03 16 5 C -0.13 -0.02 8.62 22.28 0.19 0.18 16 6 C 0.14 0.55 7.28 22.67 0.17 0.72 16 7 F -0.13 -1.28 15.55 44.97 0.70 -0.58 16 8 C -0.15 -0.08 5.88 -20.05 -0.12 -0.20 16 9 C 0.56 1.82 7.77 86.74 0.67 2.49 16 10 O -0.56 -7.57 14.94 -3.92 -0.06 -7.63 16 11 N -0.69 3.91 5.30 -443.06 -2.35 1.56 16 12 C 0.11 -0.59 4.24 45.52 0.19 -0.40 16 13 H 0.09 0.11 7.47 -2.39 -0.02 0.10 16 14 C -0.15 0.92 7.43 31.12 0.23 1.15 16 15 C -0.12 1.10 3.96 -10.26 -0.04 1.06 16 16 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 17 C 0.11 -1.25 5.99 86.38 0.52 -0.73 16 18 N -0.45 1.06 2.75 -529.06 -1.46 -0.39 16 19 C -0.05 0.00 11.58 83.09 0.96 0.96 16 20 C -0.07 -0.45 11.87 83.52 0.99 0.55 16 21 N -0.55 -5.75 11.25 -200.31 -2.25 -8.00 16 22 C 0.17 0.47 12.56 180.27 2.26 2.74 16 23 C -0.11 1.42 7.39 31.12 0.23 1.65 16 24 C -0.07 0.41 9.52 22.57 0.21 0.62 16 25 C 0.10 -0.25 7.23 22.33 0.16 -0.08 16 26 F -0.12 0.13 16.73 44.97 0.75 0.89 16 27 H 0.40 -3.61 8.74 -74.05 -0.65 -4.26 16 28 H 0.11 -0.83 7.89 -2.39 -0.02 -0.85 16 29 H -0.28 0.33 7.11 99.48 0.71 1.03 16 30 H -0.29 -0.57 6.74 99.48 0.67 0.10 16 31 H 0.16 -0.32 4.87 -2.91 -0.01 -0.33 16 32 H 0.42 -5.62 6.76 -92.70 -0.63 -6.24 16 33 H 0.11 -1.06 7.90 -2.38 -0.02 -1.08 16 34 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.12 -1.75 7.85 -2.39 -0.02 -1.77 16 36 H 0.12 -1.65 8.14 -2.38 -0.02 -1.66 16 37 H 0.20 -1.33 8.06 -2.91 -0.02 -1.35 16 38 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 39 H 0.22 -0.82 8.06 -2.91 -0.02 -0.84 16 40 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 41 H 0.12 -2.18 8.08 -2.39 -0.02 -2.20 16 42 H 0.19 -2.61 6.40 -2.91 -0.02 -2.63 16 Total: 0.00 -31.04 365.17 2.03 -29.01 By element: Atomic # 1 Polarization: -22.78 SS G_CDS: -0.17 Total: -22.96 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 6.71 Total: 11.19 kcal Atomic # 7 Polarization: -0.77 SS G_CDS: -6.06 Total: -6.83 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -1.97 Total: -9.01 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 1.45 Total: 0.31 kcal Atomic # 14 Polarization: -3.78 SS G_CDS: 2.07 Total: -1.71 kcal Total: -31.04 2.03 -29.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.014 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds