Wall clock time and date at job start Sun Mar 7 2021 01:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86298 * 109.46789 * 2 1 4 4 C 1.50700 * 109.47318 * 120.00238 * 2 1 3 5 5 C 1.34705 * 125.66350 * 64.99702 * 4 2 1 6 6 C 1.40964 * 107.02731 * 179.73000 * 5 4 2 7 7 C 1.35933 * 106.74043 * 0.40897 * 6 5 4 8 8 C 1.47825 * 125.92784 * 179.85514 * 7 6 5 9 9 C 1.39806 * 120.00152 * 359.69442 * 8 7 6 10 10 C 1.37801 * 120.24339 * 180.02562 * 9 8 7 11 11 C 1.38771 * 120.24867 * 359.97438 * 10 9 8 12 12 O 1.35654 * 120.00797 * 180.27634 * 11 10 9 13 13 C 1.40255 * 119.99413 * 0.02562 * 11 10 9 14 14 C 1.47567 * 120.12048 * 179.97438 * 13 11 10 15 15 O 1.21586 * 120.00052 * 0.02562 * 14 13 11 16 16 N 1.34779 * 119.99966 * 180.02562 * 14 13 11 17 17 C 1.46495 * 119.99987 * 180.02562 * 16 14 13 18 18 H 1.09005 * 112.85153 * 336.18944 * 17 16 14 19 19 C 1.53776 * 113.61719 * 107.50294 * 17 16 14 20 20 C 1.53783 * 87.08465 * 139.97797 * 19 17 16 21 21 H 1.08997 * 113.61117 * 89.11273 * 20 19 17 22 22 C 1.52995 * 113.68770 * 220.00603 * 20 19 17 23 23 N 1.46496 * 109.47234 * 272.53159 * 22 20 19 24 24 C 1.36880 * 126.39682 * 90.00743 * 23 22 20 25 25 C 1.34671 * 106.81872 * 180.02562 * 24 23 22 26 26 N 1.34124 * 108.02147 * 359.97438 * 25 24 23 27 27 C 1.30501 * 109.25647 * 359.72785 * 26 25 24 28 28 C 1.53778 * 87.07707 * 334.56642 * 20 19 17 29 29 C 1.39209 * 119.99793 * 179.71257 * 8 7 6 30 30 O 1.34332 * 125.66430 * 244.97980 * 4 2 1 31 31 H 0.96698 * 114.00312 * 299.99659 * 1 2 3 32 32 H 1.09005 * 109.46828 * 240.00547 * 2 1 3 33 33 H 1.48504 * 109.99626 * 178.68136 * 3 2 1 34 34 H 1.48498 * 110.00596 * 300.00267 * 3 2 1 35 35 H 1.08008 * 126.48468 * 0.02562 * 5 4 2 36 36 H 1.08001 * 126.62950 * 180.26166 * 6 5 4 37 37 H 1.08003 * 119.87396 * 0.02648 * 9 8 7 38 38 H 1.08005 * 119.87740 * 180.02562 * 10 9 8 39 39 H 0.96703 * 113.99501 * 269.73010 * 12 11 10 40 40 H 0.96999 * 119.99788 * 359.97438 * 16 14 13 41 41 H 1.09010 * 113.61181 * 254.52837 * 19 17 16 42 42 H 1.09002 * 113.61543 * 25.42345 * 19 17 16 43 43 H 1.08997 * 109.47271 * 32.54029 * 22 20 19 44 44 H 1.09010 * 109.46847 * 152.53641 * 22 20 19 45 45 H 1.08002 * 126.59062 * 0.02934 * 24 23 22 46 46 H 1.08001 * 125.98669 * 179.97438 * 25 24 23 47 47 H 1.07998 * 125.65288 * 180.29225 * 27 26 25 48 48 H 1.08996 * 113.61528 * 270.87761 * 28 20 19 49 49 H 1.09005 * 113.61195 * 139.98068 * 28 20 19 50 50 H 1.08003 * 120.12211 * 359.96371 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7571 -2.0168 1.5092 6 6 2.3873 -2.2625 2.7459 7 6 2.9088 -1.0781 3.1619 8 6 3.6597 -0.8534 4.4152 9 6 3.8813 -1.9152 5.2973 10 6 4.5802 -1.7112 6.4673 11 6 5.0697 -0.4505 6.7785 12 8 5.7619 -0.2564 7.9289 13 6 4.8533 0.6219 5.9009 14 6 5.3721 1.9638 6.2292 15 8 5.9888 2.1412 7.2619 16 7 5.1623 2.9928 5.3844 17 6 5.6778 4.3248 5.7101 18 1 5.8323 4.4690 6.7795 19 6 6.8800 4.7475 4.8495 20 6 6.2541 6.1514 4.8045 21 1 6.5675 6.7957 5.6259 22 6 6.3683 6.8318 3.4389 23 7 7.6421 7.5507 3.3564 24 6 8.8308 7.0473 2.9015 25 6 9.7366 8.0392 2.9982 26 7 9.1176 9.1190 3.4980 27 6 7.8613 8.8357 3.7093 28 6 4.8969 5.4681 5.0408 29 6 4.1459 0.4156 4.7173 30 8 2.6277 -0.1463 2.2311 31 1 -0.3934 0.4416 0.7650 32 1 1.7923 -0.5138 -0.8901 33 1 3.5346 1.7703 0.0321 34 1 1.5614 2.4680 -1.2084 35 1 1.2374 -2.7401 0.8982 36 1 2.4428 -3.2085 3.2641 37 1 3.5034 -2.8989 5.0609 38 1 4.7483 -2.5357 7.1443 39 1 5.2098 -0.0076 8.6828 40 1 4.6706 2.8511 4.5604 41 1 7.8315 4.7103 5.3802 42 1 6.9166 4.2543 3.8781 43 1 6.3248 6.0781 2.6527 44 1 5.5452 7.5354 3.3136 45 1 9.0083 6.0469 2.5353 46 1 10.7787 7.9762 2.7217 47 1 7.1205 9.5153 4.1038 48 1 4.3913 5.1720 4.1217 49 1 4.2473 6.0128 5.7259 50 1 3.9761 1.2372 4.0371 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:27:14 Heat of formation + Delta-G solvation = 37.185482 kcal Electronic energy + Delta-G solvation = -35857.012649 eV Core-core repulsion = 31013.322034 eV Total energy + Delta-G solvation = -4843.690615 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.69501 -42.94240 -41.67637 -40.46523 -39.09071 -38.09611 -37.77160 -35.44196 -34.34584 -34.00427 -32.73575 -32.22781 -30.41409 -30.03435 -28.73429 -26.73609 -26.37850 -25.66824 -24.09832 -23.40861 -22.76700 -22.26384 -21.90634 -21.56574 -21.33002 -20.70455 -19.56482 -19.11874 -18.44888 -18.25398 -17.73160 -17.47269 -17.17812 -16.75000 -16.53144 -16.46207 -16.20382 -15.95397 -15.77565 -15.69091 -15.40693 -15.16843 -14.87004 -14.65465 -14.48833 -14.31639 -14.23654 -14.14686 -13.96152 -13.87135 -13.55746 -13.51994 -13.43587 -13.20250 -13.11674 -12.85351 -12.75705 -12.28890 -12.19290 -12.00955 -11.83102 -11.44862 -11.05977 -10.94431 -10.88670 -10.64378 -10.48567 -10.45616 -10.31173 -10.02691 -9.44583 -8.90388 -5.01731 -0.56154 -0.20394 0.77500 1.15720 1.18137 1.44272 1.50482 1.77673 1.86276 1.92038 1.93699 2.07686 2.23527 2.62919 3.10929 3.24669 3.37100 3.41141 3.47845 3.52589 3.65270 3.70388 3.78569 3.89836 3.91290 4.01596 4.03713 4.05920 4.17226 4.20909 4.22458 4.32349 4.39939 4.44588 4.58727 4.63847 4.66545 4.70552 4.73913 4.78158 4.80904 4.81234 4.88283 4.95193 5.02410 5.04368 5.13810 5.18408 5.21564 5.36446 5.43639 5.50322 5.53780 5.82570 5.99011 6.33460 6.44013 6.64089 6.71884 7.13579 7.16755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.034 4.034 3 Si 0.786 3.214 4 C -0.054 4.054 5 C -0.186 4.186 6 C -0.192 4.192 7 C 0.026 3.974 8 C -0.041 4.041 9 C -0.046 4.046 10 C -0.148 4.148 11 C 0.161 3.839 12 O -0.496 6.496 13 C -0.179 4.179 14 C 0.556 3.444 15 O -0.562 6.562 16 N -0.703 5.703 17 C 0.116 3.884 18 H 0.092 0.908 19 C -0.147 4.147 20 C -0.116 4.116 21 H 0.089 0.911 22 C 0.113 3.887 23 N -0.453 5.453 24 C -0.047 4.047 25 C -0.068 4.068 26 N -0.547 5.547 27 C 0.175 3.825 28 C -0.115 4.115 29 C -0.048 4.048 30 O -0.168 6.168 31 H 0.399 0.601 32 H 0.132 0.868 33 H -0.285 1.285 34 H -0.284 1.284 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.410 0.590 40 H 0.414 0.586 41 H 0.048 0.952 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.194 0.806 46 H 0.169 0.831 47 H 0.230 0.770 48 H 0.120 0.880 49 H 0.090 0.910 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.303 -3.142 -1.677 9.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.144 4.144 3 Si 0.689 3.311 4 C -0.104 4.104 5 C -0.205 4.205 6 C -0.211 4.211 7 C -0.024 4.024 8 C -0.041 4.041 9 C -0.064 4.064 10 C -0.167 4.167 11 C 0.115 3.885 12 O -0.310 6.310 13 C -0.183 4.183 14 C 0.345 3.655 15 O -0.442 6.442 16 N -0.355 5.355 17 C 0.011 3.989 18 H 0.110 0.890 19 C -0.186 4.186 20 C -0.136 4.136 21 H 0.108 0.892 22 C -0.008 4.008 23 N -0.135 5.135 24 C -0.181 4.181 25 C -0.214 4.214 26 N -0.266 5.266 27 C -0.108 4.108 28 C -0.154 4.154 29 C -0.066 4.066 30 O -0.066 6.066 31 H 0.250 0.750 32 H 0.149 0.851 33 H -0.212 1.212 34 H -0.211 1.211 35 H 0.176 0.824 36 H 0.189 0.811 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.271 0.729 40 H 0.252 0.748 41 H 0.067 0.933 42 H 0.118 0.882 43 H 0.129 0.871 44 H 0.140 0.860 45 H 0.211 0.789 46 H 0.186 0.814 47 H 0.246 0.754 48 H 0.138 0.862 49 H 0.109 0.891 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.521 -1.872 -2.061 8.019 hybrid contribution -0.320 -1.625 -0.162 1.664 sum -7.840 -3.496 -2.223 8.868 Atomic orbital electron populations 1.86541 1.16124 1.82196 1.50302 1.24591 0.85349 1.11971 0.92499 0.93412 0.77942 0.74691 0.85016 1.23106 1.00786 0.94079 0.92407 1.21792 1.04112 0.96099 0.98472 1.22146 1.02284 0.99135 0.97535 1.20393 1.03443 0.87645 0.90922 1.17680 1.00415 0.94558 0.91489 1.21408 0.94515 0.99261 0.91223 1.21555 0.98974 0.96973 0.99149 1.18924 0.89806 0.91861 0.87912 1.84715 1.36410 1.91053 1.18799 1.20273 1.05641 0.93749 0.98636 1.18310 0.79039 0.84803 0.83384 1.90814 1.41790 1.84751 1.26833 1.45801 1.57265 1.08264 1.24204 1.22498 0.95595 0.80993 0.99834 0.88984 1.23584 0.97734 0.96165 1.01143 1.22648 0.98202 0.95286 0.97440 0.89241 1.22209 0.82792 0.97812 0.97950 1.45754 1.10124 1.11089 1.46488 1.23041 0.85774 1.01697 1.07558 1.22598 1.01093 0.90461 1.07292 1.70236 1.06481 1.30354 1.19493 1.25538 0.95386 0.85946 1.03897 1.23319 0.95467 0.94064 1.02510 1.21426 0.93434 0.97306 0.94463 1.83878 1.58017 1.38071 1.26586 0.74998 0.85088 1.21192 1.21062 0.82387 0.81056 0.81944 0.82118 0.72917 0.74770 0.93295 0.88223 0.87091 0.85960 0.78938 0.81352 0.75425 0.86189 0.89089 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.25 12.88 -148.98 -1.92 0.33 16 2 C -0.03 0.15 2.98 71.24 0.21 0.37 16 3 Si 0.79 -4.87 32.11 68.60 2.20 -2.67 16 4 C -0.05 0.12 6.20 24.88 0.15 0.27 16 5 C -0.19 0.27 10.78 22.13 0.24 0.50 16 6 C -0.19 0.50 10.26 22.40 0.23 0.73 16 7 C 0.03 -0.05 7.03 24.27 0.17 0.12 16 8 C -0.04 0.12 5.87 -20.13 -0.12 0.00 16 9 C -0.05 0.23 9.54 22.55 0.22 0.44 16 10 C -0.15 0.46 9.96 22.29 0.22 0.68 16 11 C 0.16 0.30 6.72 22.89 0.15 0.45 16 12 O -0.50 -2.28 11.55 -68.71 -0.79 -3.08 16 13 C -0.18 -0.19 5.88 -20.04 -0.12 -0.31 16 14 C 0.56 2.21 7.76 86.70 0.67 2.88 16 15 O -0.56 -7.03 14.74 17.00 0.25 -6.78 16 16 N -0.70 2.63 5.30 -443.18 -2.35 0.28 16 17 C 0.12 -0.46 4.24 45.52 0.19 -0.27 16 18 H 0.09 0.17 7.46 -2.38 -0.02 0.16 16 19 C -0.15 0.69 7.43 31.12 0.23 0.92 16 20 C -0.12 1.00 3.96 -10.27 -0.04 0.95 16 21 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 22 C 0.11 -1.15 5.99 86.38 0.52 -0.63 16 23 N -0.45 0.79 2.75 -529.07 -1.46 -0.66 16 24 C -0.05 -0.06 11.58 83.09 0.96 0.90 16 25 C -0.07 -0.49 11.87 83.52 0.99 0.50 16 26 N -0.55 -5.75 11.25 -200.31 -2.25 -8.00 16 27 C 0.17 0.44 12.56 180.26 2.26 2.71 16 28 C -0.12 1.33 7.39 31.12 0.23 1.56 16 29 C -0.05 0.16 9.20 22.79 0.21 0.37 16 30 O -0.17 0.36 8.80 -6.41 -0.06 0.31 16 31 H 0.40 -4.82 8.70 -74.06 -0.64 -5.46 16 32 H 0.13 -0.59 7.96 -2.38 -0.02 -0.61 16 33 H -0.29 0.19 7.11 99.48 0.71 0.90 16 34 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 35 H 0.16 -0.47 8.06 -2.91 -0.02 -0.49 16 36 H 0.17 -1.23 7.24 -2.91 -0.02 -1.25 16 37 H 0.16 -1.63 6.96 -2.91 -0.02 -1.65 16 38 H 0.16 -1.08 8.06 -2.91 -0.02 -1.10 16 39 H 0.41 -1.06 9.06 -74.06 -0.67 -1.73 16 40 H 0.41 -4.17 6.75 -92.71 -0.63 -4.80 16 41 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 42 H 0.10 -0.71 7.90 -2.39 -0.02 -0.73 16 43 H 0.11 -1.44 7.85 -2.39 -0.02 -1.46 16 44 H 0.12 -1.75 8.14 -2.38 -0.02 -1.76 16 45 H 0.19 -0.83 8.06 -2.91 -0.02 -0.85 16 46 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 47 H 0.23 -1.10 8.06 -2.91 -0.02 -1.12 16 48 H 0.12 -1.99 8.08 -2.39 -0.02 -2.01 16 49 H 0.09 -1.07 8.14 -2.38 -0.02 -1.09 16 50 H 0.16 -1.33 6.24 -2.91 -0.02 -1.35 16 Total: 0.00 -32.81 427.88 0.34 -32.47 By element: Atomic # 1 Polarization: -24.48 SS G_CDS: -0.88 Total: -25.36 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 7.59 Total: 13.16 kcal Atomic # 7 Polarization: -2.32 SS G_CDS: -6.06 Total: -8.38 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -2.52 Total: -9.23 kcal Atomic # 14 Polarization: -4.87 SS G_CDS: 2.20 Total: -2.67 kcal Total: -32.81 0.34 -32.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.654 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds