Wall clock time and date at job start Sun Mar 7 2021 01:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34662 * 124.84978 * 2 1 4 4 C 1.36767 * 108.39604 * 180.02562 * 3 2 1 5 5 C 1.47269 * 126.94379 * 179.97438 * 4 3 2 6 6 O 1.21626 * 120.00025 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99535 * 0.03848 * 5 4 3 8 8 C 1.46499 * 119.99594 * 180.02562 * 7 5 4 9 9 H 1.09005 * 112.85378 * 23.80498 * 8 7 5 10 10 C 1.53780 * 113.61690 * 155.00083 * 8 7 5 11 11 C 1.53775 * 87.08250 * 139.97810 * 10 8 7 12 12 H 1.09000 * 113.61343 * 89.20377 * 11 10 8 13 13 C 1.53003 * 113.61309 * 220.01735 * 11 10 8 14 14 N 1.46501 * 109.46935 * 185.00014 * 13 11 10 15 15 C 1.36876 * 126.39787 * 269.71742 * 14 13 11 16 16 C 1.34680 * 106.81646 * 179.84326 * 15 14 13 17 17 N 1.34126 * 108.01623 * 0.41866 * 16 15 14 18 18 C 1.30497 * 109.25871 * 359.73409 * 17 16 15 19 19 C 1.53776 * 87.08111 * 334.56836 * 11 10 8 20 20 C 1.46686 * 106.11560 * 359.97438 * 4 3 2 21 21 C 1.34490 * 106.33531 * 0.02562 * 20 4 3 22 22 C 1.50696 * 125.57471 * 180.02562 * 21 20 4 23 23 O 1.42900 * 109.46994 * 150.02271 * 22 21 20 24 24 Si 1.86301 * 109.47100 * 30.02109 * 22 21 20 25 25 H 1.09005 * 109.47290 * 89.97228 * 1 2 3 26 26 H 1.08999 * 109.47321 * 209.97485 * 1 2 3 27 27 H 1.08999 * 109.47047 * 329.97739 * 1 2 3 28 28 H 1.07997 * 125.80507 * 0.04371 * 3 2 1 29 29 H 0.96995 * 120.00306 * 0.02562 * 7 5 4 30 30 H 1.09005 * 113.61346 * 254.53270 * 10 8 7 31 31 H 1.08999 * 113.61246 * 25.34503 * 10 8 7 32 32 H 1.08993 * 109.47330 * 304.99923 * 13 11 10 33 33 H 1.08997 * 109.46722 * 65.00627 * 13 11 10 34 34 H 1.07993 * 126.59619 * 359.97438 * 15 14 13 35 35 H 1.07996 * 125.98970 * 180.11865 * 16 15 14 36 36 H 1.08004 * 125.64495 * 179.97438 * 18 17 16 37 37 H 1.08996 * 113.61464 * 270.87619 * 19 11 10 38 38 H 1.09005 * 113.61197 * 139.98151 * 19 11 10 39 39 H 1.08004 * 126.83660 * 179.73912 * 20 4 3 40 40 H 1.08998 * 109.47262 * 270.02256 * 22 21 20 41 41 H 0.96699 * 113.99871 * 299.99169 * 23 22 21 42 42 H 1.48496 * 110.00195 * 58.68422 * 24 22 21 43 43 H 1.48508 * 109.99786 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2344 1.1051 0.0000 4 6 3.5461 0.7177 -0.0006 5 6 4.7284 1.5958 -0.0013 6 8 5.8446 1.1128 -0.0023 7 7 4.5733 2.9346 -0.0007 8 6 5.7494 3.8082 -0.0020 9 1 6.6367 3.3229 -0.4088 10 6 5.4817 5.2008 -0.5966 11 6 6.3676 5.7644 0.5269 12 1 7.4245 5.8160 0.2652 13 6 5.8400 7.0690 1.1274 14 7 6.8071 7.5856 2.0990 15 6 6.8410 7.3062 3.4385 16 6 7.8866 7.9827 3.9513 17 7 8.4694 8.6640 2.9537 18 6 7.8282 8.4310 1.8413 19 6 5.9930 4.5152 1.3417 20 6 3.5375 -0.7491 -0.0003 21 6 2.2446 -1.1197 -0.0002 22 6 1.7397 -2.5396 0.0006 23 8 0.4804 -2.5969 0.6737 24 14 2.9644 -3.6337 0.8802 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5142 28 1 1.8767 2.1241 0.0007 29 1 3.6831 3.3198 0.0006 30 1 5.9008 5.3378 -1.5936 31 1 4.4390 5.5112 -0.5295 32 1 5.6953 7.8019 0.3338 33 1 4.8892 6.8809 1.6261 34 1 6.1614 6.6647 3.9798 35 1 8.1979 7.9810 4.9854 36 1 8.0733 8.8459 0.8747 37 1 5.0904 4.6388 1.9401 38 1 6.8249 4.0988 1.9097 39 1 4.3980 -1.4017 -0.0046 40 1 1.6184 -2.8827 -1.0268 41 1 0.5134 -2.3053 1.5951 42 1 3.1626 -3.1574 2.2726 43 1 2.4783 -5.0370 0.8873 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_13287730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:27:24 Heat of formation + Delta-G solvation = 81.853397 kcal Electronic energy + Delta-G solvation = -25546.404273 eV Core-core repulsion = 21789.493639 eV Total energy + Delta-G solvation = -3756.910634 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.92389 -42.45911 -40.89723 -39.23839 -37.95414 -35.35699 -34.07570 -33.59368 -31.39046 -30.39231 -28.81658 -27.49779 -26.69872 -26.35048 -24.55241 -23.00197 -22.24594 -21.68455 -21.26572 -20.74824 -20.33784 -18.97704 -18.40127 -17.48832 -17.24388 -16.86877 -16.78154 -16.31026 -15.95127 -15.86197 -15.62572 -15.37549 -15.12335 -14.97212 -14.82994 -14.54381 -14.20754 -14.14888 -14.10085 -13.50099 -13.47737 -13.40011 -13.22127 -13.03498 -12.81771 -12.37401 -12.24215 -11.98627 -11.92549 -11.41404 -10.99314 -10.90710 -10.89376 -10.45938 -10.05486 -9.55267 -9.42443 -9.20636 -4.90559 0.74491 1.02211 1.17720 1.44281 1.61815 1.80041 1.95012 2.06596 2.25073 2.33709 2.55641 3.15073 3.42164 3.51638 3.56128 3.74002 3.82135 3.89356 3.91485 3.96448 4.06314 4.18020 4.21875 4.34147 4.43475 4.45619 4.49136 4.51454 4.61071 4.72888 4.75186 4.80634 4.83778 4.84782 4.95612 4.98673 5.00842 5.06794 5.27355 5.39106 5.59820 5.68068 5.84861 5.96443 6.23705 6.31352 6.34987 6.67834 7.18527 7.37329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.427 5.427 3 C 0.073 3.927 4 C -0.262 4.262 5 C 0.587 3.413 6 O -0.597 6.597 7 N -0.704 5.704 8 C 0.115 3.885 9 H 0.085 0.915 10 C -0.115 4.115 11 C -0.117 4.117 12 H 0.087 0.913 13 C 0.115 3.885 14 N -0.453 5.453 15 C -0.045 4.045 16 C -0.069 4.069 17 N -0.547 5.547 18 C 0.173 3.827 19 C -0.144 4.144 20 C -0.157 4.157 21 C -0.024 4.024 22 C -0.042 4.042 23 O -0.538 6.538 24 Si 0.770 3.230 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.210 0.790 29 H 0.415 0.585 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.196 0.804 35 H 0.170 0.830 36 H 0.228 0.772 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.152 0.848 40 H 0.132 0.868 41 H 0.388 0.612 42 H -0.294 1.294 43 H -0.288 1.288 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 1.744 -3.348 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.100 5.100 3 C -0.065 4.065 4 C -0.272 4.272 5 C 0.377 3.623 6 O -0.479 6.479 7 N -0.355 5.355 8 C 0.010 3.990 9 H 0.104 0.896 10 C -0.153 4.153 11 C -0.137 4.137 12 H 0.105 0.895 13 C -0.006 4.006 14 N -0.134 5.134 15 C -0.179 4.179 16 C -0.216 4.216 17 N -0.266 5.266 18 C -0.110 4.110 19 C -0.183 4.183 20 C -0.181 4.181 21 C -0.133 4.133 22 C -0.152 4.152 23 O -0.347 6.347 24 Si 0.674 3.326 25 H 0.097 0.903 26 H 0.128 0.872 27 H 0.124 0.876 28 H 0.227 0.773 29 H 0.252 0.748 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.213 0.787 35 H 0.187 0.813 36 H 0.244 0.756 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.170 0.830 40 H 0.150 0.850 41 H 0.238 0.762 42 H -0.221 1.221 43 H -0.215 1.215 Dipole moment (debyes) X Y Z Total from point charges -9.088 1.064 -3.288 9.723 hybrid contribution -1.279 -0.074 0.835 1.530 sum -10.367 0.989 -2.452 10.699 Atomic orbital electron populations 1.22736 0.74642 1.07048 1.04952 1.43730 1.08028 1.04636 1.53654 1.22433 0.88959 0.93257 1.01843 1.20337 0.92282 0.93899 1.20721 1.17750 0.87704 0.82510 0.74327 1.90756 1.27895 1.76277 1.52942 1.45619 1.10182 1.04609 1.75061 1.22421 0.89376 0.89649 0.97548 0.89643 1.23294 1.01930 0.91767 0.98340 1.22647 1.00574 0.92996 0.97444 0.89507 1.22195 0.90936 0.95864 0.91605 1.45758 1.24557 1.34950 1.08176 1.23068 1.03819 1.06532 0.84474 1.22614 0.97671 1.01585 0.99693 1.70233 1.30355 1.25804 1.00204 1.25516 0.88773 0.96453 1.00221 1.23562 1.02057 0.95736 0.96915 1.21825 0.95551 0.93751 1.06995 1.20781 0.90449 0.89804 1.12297 1.24701 0.92361 0.94114 1.04026 1.86538 1.29552 1.88613 1.29949 0.93313 0.84631 0.74678 0.79932 0.90267 0.87245 0.87584 0.77350 0.74770 0.89653 0.86235 0.86239 0.86828 0.78694 0.81301 0.75569 0.87870 0.93416 0.83015 0.85003 0.76224 1.22102 1.21529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.44 10.71 127.77 1.37 0.93 16 2 N -0.43 1.71 3.09 -533.25 -1.65 0.06 16 3 C 0.07 -0.35 10.83 83.91 0.91 0.56 16 4 C -0.26 -0.71 6.29 -19.04 -0.12 -0.83 16 5 C 0.59 3.58 7.81 86.62 0.68 4.25 16 6 O -0.60 -9.73 16.57 -4.11 -0.07 -9.80 16 7 N -0.70 2.17 5.34 -443.45 -2.37 -0.20 16 8 C 0.12 -0.32 4.24 45.52 0.19 -0.13 16 9 H 0.09 0.36 7.46 -2.38 -0.02 0.34 16 10 C -0.11 1.20 7.39 31.12 0.23 1.43 16 11 C -0.12 0.94 3.96 -10.27 -0.04 0.90 16 12 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 13 C 0.12 -1.16 5.99 86.38 0.52 -0.64 16 14 N -0.45 0.81 2.75 -529.07 -1.46 -0.65 16 15 C -0.05 -0.04 11.58 83.09 0.96 0.92 16 16 C -0.07 -0.49 11.87 83.53 0.99 0.51 16 17 N -0.55 -5.78 11.25 -200.30 -2.25 -8.04 16 18 C 0.17 0.48 12.56 180.26 2.26 2.74 16 19 C -0.14 0.64 7.43 31.12 0.23 0.88 16 20 C -0.16 -0.57 9.49 23.62 0.22 -0.34 16 21 C -0.02 0.01 6.14 40.98 0.25 0.26 16 22 C -0.04 0.12 2.98 71.23 0.21 0.33 16 23 O -0.54 1.72 9.95 -148.98 -1.48 0.24 16 24 Si 0.77 -0.91 31.12 68.60 2.13 1.22 16 25 H 0.08 -0.76 8.14 -2.38 -0.02 -0.78 16 26 H 0.11 -0.98 4.93 -2.39 -0.01 -0.99 16 27 H 0.11 -1.50 8.13 -2.39 -0.02 -1.52 16 28 H 0.21 -2.97 7.45 -2.91 -0.02 -2.99 16 29 H 0.41 -4.55 7.67 -92.71 -0.71 -5.26 16 30 H 0.08 -0.85 8.14 -2.38 -0.02 -0.87 16 31 H 0.12 -1.90 8.08 -2.39 -0.02 -1.92 16 32 H 0.12 -1.66 8.14 -2.39 -0.02 -1.68 16 33 H 0.11 -1.53 7.84 -2.39 -0.02 -1.55 16 34 H 0.20 -1.01 8.06 -2.91 -0.02 -1.03 16 35 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 36 H 0.23 -0.99 8.06 -2.91 -0.02 -1.01 16 37 H 0.10 -0.81 7.90 -2.39 -0.02 -0.83 16 38 H 0.05 0.07 8.14 -2.38 -0.02 0.06 16 39 H 0.15 0.50 6.90 -2.91 -0.02 0.48 16 40 H 0.13 -0.59 7.96 -2.39 -0.02 -0.61 16 41 H 0.39 -3.09 8.38 -74.06 -0.62 -3.71 16 42 H -0.29 -1.49 7.11 99.48 0.71 -0.79 16 43 H -0.29 -1.35 7.11 99.48 0.71 -0.64 16 Total: 0.00 -31.82 361.15 1.48 -30.34 By element: Atomic # 1 Polarization: -24.70 SS G_CDS: -0.25 Total: -24.95 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 8.87 Total: 11.76 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -7.72 Total: -8.82 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -1.55 Total: -9.56 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: 2.13 Total: 1.22 kcal Total: -31.82 1.48 -30.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_13287730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.198 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds