Wall clock time and date at job start Sun Mar 7 2021 01:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47093 * 2 1 4 4 C 1.50698 * 109.47193 * 239.99962 * 2 1 3 5 5 C 1.38353 * 120.34950 * 300.00356 * 4 2 1 6 6 C 1.40017 * 118.29337 * 180.02562 * 5 4 2 7 7 C 1.47843 * 120.56323 * 180.02562 * 6 5 4 8 8 O 1.21551 * 119.99841 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00145 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00042 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.84866 * 23.80678 * 10 9 7 12 12 C 1.53787 * 113.61128 * 154.99929 * 10 9 7 13 13 C 1.53784 * 87.07923 * 139.98386 * 12 10 9 14 14 H 1.09002 * 113.61478 * 89.11632 * 13 12 10 15 15 C 1.52994 * 113.61233 * 220.01769 * 13 12 10 16 16 N 1.46502 * 109.47057 * 185.00081 * 15 13 12 17 17 C 1.36879 * 126.39821 * 89.99896 * 16 15 13 18 18 C 1.34673 * 106.81695 * 180.02562 * 17 16 15 19 19 N 1.34129 * 108.02027 * 0.02562 * 18 17 16 20 20 C 1.30497 * 109.25635 * 359.72305 * 19 18 17 21 21 C 1.53779 * 87.08045 * 334.56667 * 13 12 10 22 22 C 1.39523 * 118.87820 * 0.27392 * 6 5 4 23 23 N 1.31698 * 120.56574 * 359.44790 * 22 6 5 24 24 C 1.31925 * 121.87601 * 0.54824 * 23 22 6 25 25 H 0.96699 * 114.00173 * 59.99895 * 1 2 3 26 26 H 1.09003 * 109.46909 * 119.99714 * 2 1 3 27 27 H 1.48501 * 110.00115 * 59.99985 * 3 2 1 28 28 H 1.48500 * 109.99936 * 181.32168 * 3 2 1 29 29 H 1.08009 * 120.85376 * 0.04104 * 5 4 2 30 30 H 0.97005 * 119.99829 * 359.97438 * 9 7 6 31 31 H 1.09004 * 113.61202 * 254.53139 * 12 10 9 32 32 H 1.08994 * 113.61447 * 25.43570 * 12 10 9 33 33 H 1.08994 * 109.47510 * 304.99618 * 15 13 12 34 34 H 1.09001 * 109.47575 * 65.00169 * 15 13 12 35 35 H 1.07994 * 126.59193 * 0.03521 * 17 16 15 36 36 H 1.08003 * 125.98806 * 179.97438 * 18 17 16 37 37 H 1.08005 * 125.65230 * 180.29484 * 20 19 18 38 38 H 1.09006 * 113.61307 * 270.88660 * 21 13 12 39 39 H 1.09007 * 113.61642 * 139.98417 * 21 13 12 40 40 H 1.08005 * 119.71469 * 179.73092 * 22 6 5 41 41 H 1.08005 * 119.45402 * 179.72718 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6015 -2.0349 -1.4566 6 6 2.0920 -2.6528 -2.6133 7 6 1.7702 -4.0660 -2.9048 8 8 1.0746 -4.7017 -2.1371 9 7 2.2489 -4.6497 -4.0213 10 6 1.9304 -6.0502 -4.3099 11 1 1.0153 -6.3854 -3.8218 12 6 1.9946 -6.4009 -5.8059 13 6 2.6447 -7.7298 -5.3860 14 1 1.9255 -8.5255 -5.1916 15 6 3.7867 -8.1703 -6.3038 16 7 4.2585 -9.4955 -5.8946 17 6 3.7920 -10.6997 -6.3484 18 6 4.4986 -11.6552 -5.7147 19 7 5.3723 -11.0508 -4.8959 20 6 5.2381 -9.7572 -5.0025 21 6 3.1199 -7.0052 -4.1156 22 6 2.8941 -1.9138 -3.4835 23 7 3.1760 -0.6532 -3.2270 24 6 2.7276 -0.0452 -2.1455 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5138 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5346 1.7703 -0.0322 29 1 0.9813 -2.5782 -0.7589 30 1 2.8043 -4.1424 -4.6339 31 1 1.0150 -6.5210 -6.2686 32 1 2.6575 -5.7522 -6.3783 33 1 3.4298 -8.2136 -7.3328 34 1 4.6062 -7.4551 -6.2332 35 1 3.0081 -10.8540 -7.0750 36 1 4.3815 -12.7212 -5.8427 37 1 5.8135 -9.0181 -4.4647 38 1 4.0906 -6.5217 -4.2260 39 1 3.0489 -7.6132 -3.2136 40 1 3.2834 -2.3783 -4.3775 41 1 2.9866 0.9888 -1.9716 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:27:35 Heat of formation + Delta-G solvation = 67.223615 kcal Electronic energy + Delta-G solvation = -24825.442237 eV Core-core repulsion = 21095.208687 eV Total energy + Delta-G solvation = -3730.233550 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.94161 -41.97602 -40.85369 -39.43648 -37.95127 -35.55183 -34.28428 -33.76976 -32.81800 -30.38706 -28.85977 -27.29775 -26.74685 -26.12475 -23.99701 -23.60081 -22.26517 -21.88045 -21.62571 -20.72104 -19.18972 -18.57009 -18.13547 -17.84719 -17.71290 -16.98144 -16.57277 -16.31532 -16.12552 -16.00304 -15.73168 -15.34901 -15.05113 -14.82498 -14.68874 -14.42301 -14.26165 -14.24917 -14.05736 -13.52826 -13.47443 -13.42344 -12.97691 -12.74123 -12.28820 -12.16969 -11.98423 -11.53548 -11.40403 -11.10874 -10.90314 -10.64598 -10.59986 -10.48129 -10.33295 -10.09549 -9.43986 -5.03448 -0.59373 -0.04907 1.15951 1.21550 1.59472 1.62640 1.88498 1.95016 2.01571 2.23911 2.61341 3.09494 3.36120 3.37578 3.42436 3.46666 3.64535 3.67753 3.71322 3.72505 3.79168 3.89169 4.08175 4.09303 4.12528 4.18698 4.25948 4.42416 4.46139 4.61657 4.70064 4.71695 4.77978 4.81578 4.82088 4.91666 4.93864 5.03163 5.13811 5.30550 5.36268 5.49695 5.83749 6.32853 6.35675 6.62808 6.69103 7.02690 7.17271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.075 4.075 3 Si 0.786 3.214 4 C -0.176 4.176 5 C -0.005 4.005 6 C -0.198 4.198 7 C 0.564 3.436 8 O -0.579 6.579 9 N -0.695 5.695 10 C 0.114 3.886 11 H 0.090 0.910 12 C -0.115 4.115 13 C -0.117 4.117 14 H 0.086 0.914 15 C 0.114 3.886 16 N -0.453 5.453 17 C -0.048 4.048 18 C -0.068 4.068 19 N -0.548 5.548 20 C 0.175 3.825 21 C -0.147 4.147 22 C 0.149 3.851 23 N -0.492 5.492 24 C 0.130 3.870 25 H 0.397 0.603 26 H 0.110 0.890 27 H -0.296 1.296 28 H -0.275 1.275 29 H 0.133 0.867 30 H 0.419 0.581 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.201 0.799 36 H 0.171 0.829 37 H 0.223 0.777 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.196 0.804 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 6.816 -8.468 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.185 4.185 3 Si 0.690 3.310 4 C -0.179 4.179 5 C -0.031 4.031 6 C -0.203 4.203 7 C 0.351 3.649 8 O -0.459 6.459 9 N -0.347 5.347 10 C 0.009 3.991 11 H 0.108 0.892 12 C -0.153 4.153 13 C -0.137 4.137 14 H 0.105 0.895 15 C -0.007 4.007 16 N -0.135 5.135 17 C -0.181 4.181 18 C -0.215 4.215 19 N -0.267 5.267 20 C -0.108 4.108 21 C -0.185 4.185 22 C -0.009 4.009 23 N -0.200 5.200 24 C -0.026 4.026 25 H 0.247 0.753 26 H 0.127 0.873 27 H -0.224 1.224 28 H -0.201 1.201 29 H 0.151 0.849 30 H 0.258 0.742 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.218 0.782 36 H 0.188 0.812 37 H 0.240 0.760 38 H 0.126 0.874 39 H 0.068 0.932 40 H 0.213 0.787 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.861 6.839 -7.123 9.912 hybrid contribution -0.980 -1.019 0.693 1.575 sum -0.119 5.820 -6.429 8.673 Atomic orbital electron populations 1.86509 1.17042 1.82186 1.50555 1.25262 0.85496 1.11595 0.96137 0.93734 0.78023 0.73791 0.85439 1.21435 1.01478 0.95195 0.99756 1.21635 0.93185 0.93699 0.94607 1.21014 1.04917 0.95205 0.99132 1.18284 0.78933 0.86161 0.81536 1.90806 1.40034 1.65809 1.49297 1.45733 1.52473 1.13118 1.23328 1.22533 0.98714 0.79742 0.98125 0.89203 1.23320 1.02999 0.95086 0.93925 1.22639 0.97614 0.97432 0.95993 0.89548 1.22209 0.97994 0.80388 1.00104 1.45763 1.27848 1.07798 1.32060 1.23156 1.04892 0.84401 1.05691 1.22635 0.98299 1.00713 0.99864 1.70234 1.25694 1.06493 1.24323 1.25404 0.94690 0.94253 0.96411 1.23612 0.99545 0.97512 0.97851 1.23491 0.90565 0.89181 0.97690 1.67817 1.21987 1.10671 1.19505 1.23222 0.90714 1.00534 0.88123 0.75291 0.87261 1.22385 1.20108 0.84938 0.74214 0.89487 0.85921 0.86625 0.86305 0.78219 0.81200 0.76041 0.87380 0.93206 0.78697 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.41 12.78 -148.98 -1.90 -1.50 16 2 C -0.08 0.17 2.83 71.24 0.20 0.37 16 3 Si 0.79 -4.18 29.82 68.60 2.05 -2.13 16 4 C -0.18 0.26 5.39 -19.81 -0.11 0.16 16 5 C 0.00 -0.01 9.31 22.73 0.21 0.20 16 6 C -0.20 0.01 5.89 -19.99 -0.12 -0.11 16 7 C 0.56 1.42 7.78 86.79 0.68 2.10 16 8 O -0.58 -7.23 16.02 -3.88 -0.06 -7.29 16 9 N -0.69 4.17 5.31 -442.91 -2.35 1.82 16 10 C 0.11 -0.61 4.24 45.52 0.19 -0.42 16 11 H 0.09 0.11 7.46 -2.39 -0.02 0.09 16 12 C -0.11 1.43 7.39 31.12 0.23 1.66 16 13 C -0.12 1.12 3.96 -10.27 -0.04 1.08 16 14 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 15 C 0.11 -1.27 5.99 86.38 0.52 -0.75 16 16 N -0.45 1.14 2.75 -529.07 -1.46 -0.31 16 17 C -0.05 0.00 11.58 83.09 0.96 0.96 16 18 C -0.07 -0.44 11.87 83.52 0.99 0.56 16 19 N -0.55 -5.63 11.25 -200.30 -2.25 -7.89 16 20 C 0.18 0.43 12.56 180.26 2.26 2.70 16 21 C -0.15 0.96 7.43 31.12 0.23 1.19 16 22 C 0.15 -0.70 10.71 85.02 0.91 0.22 16 23 N -0.49 0.88 10.35 -194.75 -2.01 -1.13 16 24 C 0.13 -0.42 9.84 84.70 0.83 0.41 16 25 H 0.40 -3.67 8.70 -74.06 -0.64 -4.32 16 26 H 0.11 -0.07 7.96 -2.39 -0.02 -0.09 16 27 H -0.30 -0.81 7.11 99.48 0.71 -0.11 16 28 H -0.27 0.44 7.11 99.48 0.71 1.15 16 29 H 0.13 0.78 7.74 -2.91 -0.02 0.75 16 30 H 0.42 -5.71 6.79 -92.70 -0.63 -6.34 16 31 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 32 H 0.12 -2.19 8.08 -2.39 -0.02 -2.21 16 33 H 0.12 -1.65 8.14 -2.39 -0.02 -1.67 16 34 H 0.12 -1.79 7.84 -2.39 -0.02 -1.81 16 35 H 0.20 -1.34 8.06 -2.91 -0.02 -1.36 16 36 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 37 H 0.22 -0.90 8.06 -2.91 -0.02 -0.92 16 38 H 0.11 -1.11 7.90 -2.38 -0.02 -1.12 16 39 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 40 H 0.20 -2.56 6.42 -2.91 -0.02 -2.58 16 41 H 0.18 -1.50 4.88 -2.91 -0.01 -1.51 16 Total: 0.00 -30.96 349.79 -0.19 -31.15 By element: Atomic # 1 Polarization: -22.87 SS G_CDS: -0.16 Total: -23.03 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 7.96 Total: 10.32 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -8.08 Total: -7.52 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -1.97 Total: -8.79 kcal Atomic # 14 Polarization: -4.18 SS G_CDS: 2.05 Total: -2.13 kcal Total: -30.96 -0.19 -31.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.374 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds