Wall clock time and date at job start Sun Mar 7 2021 01:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86305 * 109.46995 * 2 1 4 4 C 1.50702 * 109.47182 * 119.99510 * 2 1 3 5 5 C 1.34180 * 125.43164 * 65.27223 * 4 2 1 6 6 C 1.47027 * 105.94922 * 180.12493 * 5 4 2 7 7 C 1.47375 * 127.18903 * 179.89318 * 6 5 4 8 8 O 1.21610 * 120.00322 * 359.43151 * 7 6 5 9 9 N 1.34784 * 119.99840 * 179.70488 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72634 * 9 7 6 11 11 H 1.08994 * 112.85555 * 23.80061 * 10 9 7 12 12 C 1.53777 * 113.61200 * 155.00334 * 10 9 7 13 13 C 1.53781 * 87.08274 * 139.97613 * 12 10 9 14 14 H 1.09007 * 113.61465 * 89.11410 * 13 12 10 15 15 C 1.52996 * 113.61556 * 219.92831 * 13 12 10 16 16 N 1.46500 * 109.47253 * 184.99794 * 15 13 12 17 17 C 1.36878 * 126.39618 * 90.00303 * 16 15 13 18 18 C 1.34671 * 106.82023 * 180.02562 * 17 16 15 19 19 N 1.34122 * 108.01796 * 359.97438 * 18 17 16 20 20 C 1.30502 * 109.25647 * 359.72972 * 19 18 17 21 21 C 1.53775 * 87.07928 * 334.56404 * 13 12 10 22 22 C 1.36415 * 105.61416 * 359.62571 * 6 5 4 23 23 O 1.33648 * 108.40122 * 0.23205 * 22 6 5 24 24 H 0.96701 * 114.00071 * 60.00338 * 1 2 3 25 25 H 1.08994 * 109.47388 * 239.99946 * 2 1 3 26 26 H 1.48499 * 109.99897 * 298.68120 * 3 2 1 27 27 H 1.48501 * 110.00082 * 59.99675 * 3 2 1 28 28 H 1.07998 * 127.02909 * 359.97438 * 5 4 2 29 29 H 0.97005 * 119.99846 * 359.72422 * 9 7 6 30 30 H 1.09003 * 113.61102 * 254.52380 * 12 10 9 31 31 H 1.08994 * 113.61778 * 25.42685 * 12 10 9 32 32 H 1.08994 * 109.47611 * 305.00306 * 15 13 12 33 33 H 1.09007 * 109.46944 * 64.99990 * 15 13 12 34 34 H 1.08007 * 126.58986 * 359.96658 * 17 16 15 35 35 H 1.08004 * 125.99114 * 180.02562 * 18 17 16 36 36 H 1.08001 * 125.65050 * 180.29186 * 20 19 18 37 37 H 1.08997 * 113.61959 * 270.88049 * 21 13 12 38 38 H 1.09002 * 113.61358 * 139.97938 * 21 13 12 39 39 H 1.08006 * 125.79736 * 180.22404 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.7595 -2.0132 1.5013 6 6 2.4123 -2.2460 2.7980 7 6 2.5005 -3.5191 3.5351 8 8 1.9889 -4.5231 3.0780 9 7 3.1435 -3.5693 4.7186 10 6 3.2261 -4.8335 5.4542 11 1 3.1195 -5.7061 4.8098 12 6 4.4308 -4.9145 6.4065 13 6 3.4915 -5.6046 7.4097 14 1 3.4567 -6.6886 7.3008 15 6 3.7076 -5.1596 8.8575 16 7 2.8551 -5.9544 9.7451 17 6 3.1882 -7.1385 10.3454 18 6 2.1196 -7.5227 11.0693 19 7 1.1603 -6.5980 10.9156 20 6 1.5959 -5.6526 10.1286 21 6 2.3338 -4.8772 6.7060 22 6 2.9244 -1.0385 3.1732 23 8 2.6268 -0.1419 2.2279 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5138 -0.8899 26 1 1.5878 2.4586 -1.2242 27 1 1.5614 2.4680 1.2085 28 1 1.2445 -2.7416 0.8925 29 1 3.5517 -2.7684 5.0832 30 1 5.2316 -5.5590 6.0437 31 1 4.7886 -3.9411 6.7417 32 1 4.7526 -5.3060 9.1305 33 1 3.4508 -4.1048 8.9556 34 1 4.1274 -7.6643 10.2550 35 1 2.0480 -8.4179 11.6692 36 1 1.0404 -4.7755 9.8309 37 1 2.1182 -3.8935 7.1231 38 1 1.4415 -5.4915 6.5849 39 1 3.4764 -0.8408 4.0802 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14468608_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:28:03 Heat of formation + Delta-G solvation = 50.713806 kcal Electronic energy + Delta-G solvation = -23546.629678 eV Core-core repulsion = 19846.187687 eV Total energy + Delta-G solvation = -3700.441991 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.73839 -42.93805 -41.16402 -39.41978 -38.13702 -35.48455 -34.32695 -33.65684 -31.92767 -30.34961 -28.96290 -27.00079 -26.77208 -25.52687 -23.48981 -22.25012 -22.20204 -21.76729 -21.33430 -20.53776 -19.06021 -18.83883 -18.50673 -17.47751 -17.30693 -17.16487 -16.47095 -16.22634 -16.04524 -15.87643 -15.69877 -15.37186 -14.86297 -14.77797 -14.37964 -14.14957 -14.08712 -14.06878 -13.81103 -13.74943 -13.61779 -13.16471 -12.85199 -12.44029 -12.18030 -12.12664 -11.68866 -11.07462 -10.90450 -10.81091 -10.72005 -10.49078 -10.17783 -9.82317 -9.39059 -5.06306 0.19202 0.84756 1.06991 1.16269 1.36099 1.65708 1.79348 1.88337 2.00569 2.29471 2.35493 3.10396 3.16199 3.21854 3.42677 3.45258 3.49499 3.55896 3.80844 3.81518 3.86774 3.94264 3.99506 4.10832 4.14885 4.33500 4.37255 4.49668 4.55458 4.58843 4.59363 4.69753 4.76547 4.81337 4.84676 5.01761 5.19882 5.34702 5.37656 5.83284 5.87166 6.22432 6.27693 6.36082 7.14603 7.22966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.039 4.039 3 Si 0.701 3.299 4 C -0.010 4.010 5 C -0.121 4.121 6 C -0.238 4.238 7 C 0.590 3.410 8 O -0.529 6.529 9 N -0.719 5.719 10 C 0.127 3.873 11 H 0.119 0.881 12 C -0.136 4.136 13 C -0.126 4.126 14 H 0.103 0.897 15 C 0.117 3.883 16 N -0.458 5.458 17 C -0.058 4.058 18 C -0.030 4.030 19 N -0.496 5.496 20 C 0.183 3.817 21 C -0.148 4.148 22 C 0.034 3.966 23 O -0.165 6.165 24 H 0.389 0.611 25 H 0.098 0.902 26 H -0.253 1.253 27 H -0.251 1.251 28 H 0.162 0.838 29 H 0.399 0.601 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.201 0.799 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.501 4.608 -1.844 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.148 4.148 3 Si 0.600 3.400 4 C -0.058 4.058 5 C -0.141 4.141 6 C -0.243 4.243 7 C 0.378 3.622 8 O -0.406 6.406 9 N -0.370 5.370 10 C 0.022 3.978 11 H 0.137 0.863 12 C -0.175 4.175 13 C -0.145 4.145 14 H 0.121 0.879 15 C -0.006 4.006 16 N -0.141 5.141 17 C -0.191 4.191 18 C -0.177 4.177 19 N -0.214 5.214 20 C -0.099 4.099 21 C -0.187 4.187 22 C -0.037 4.037 23 O -0.061 6.061 24 H 0.238 0.762 25 H 0.116 0.884 26 H -0.177 1.177 27 H -0.175 1.175 28 H 0.179 0.821 29 H 0.233 0.767 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.190 0.810 35 H 0.186 0.814 36 H 0.218 0.782 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.375 4.760 -1.380 8.075 hybrid contribution -0.107 -0.025 -0.576 0.586 sum 6.267 4.735 -1.956 8.095 Atomic orbital electron populations 1.86575 1.16840 1.80427 1.50344 1.23846 0.84999 1.12319 0.93604 0.94526 0.91289 0.73188 0.81005 1.21074 1.01117 0.91987 0.91575 1.22499 1.00815 0.95429 0.95340 1.21492 1.09258 0.94324 0.99184 1.17302 0.77708 0.87087 0.80113 1.90824 1.46020 1.35773 1.67968 1.45790 1.57587 1.12276 1.21354 1.22461 0.96013 0.87928 0.91365 0.86285 1.23369 0.97061 1.01735 0.95314 1.22788 0.97951 1.01344 0.92464 0.87886 1.21907 0.95210 0.95444 0.88044 1.45568 1.13808 1.18602 1.36129 1.22758 1.02649 0.90559 1.03100 1.22360 0.90452 1.00876 1.04038 1.70319 1.30431 1.03163 1.17473 1.24992 0.84116 1.01497 0.99329 1.23592 0.98021 1.01156 0.95911 1.24430 0.99665 0.86719 0.92894 1.83664 1.57283 1.38854 1.26279 0.76172 0.88400 1.17695 1.17527 0.82069 0.76684 0.89844 0.88989 0.88663 0.88634 0.80953 0.81380 0.78219 0.89312 0.90430 0.76912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.22 12.86 -35.23 -0.45 -0.67 16 2 C -0.04 0.03 2.96 36.01 0.11 0.14 16 3 Si 0.70 -1.20 32.09 -169.99 -5.46 -6.65 16 4 C -0.01 -0.01 6.22 -35.74 -0.22 -0.23 16 5 C -0.12 -0.28 10.90 -37.45 -0.41 -0.68 16 6 C -0.24 -0.25 6.31 -103.28 -0.65 -0.91 16 7 C 0.59 1.23 7.81 -12.54 -0.10 1.13 16 8 O -0.53 -3.47 16.58 5.27 0.09 -3.39 16 9 N -0.72 1.44 5.35 -54.11 -0.29 1.15 16 10 C 0.13 -0.26 4.24 -67.12 -0.28 -0.54 16 11 H 0.12 0.04 7.46 -51.93 -0.39 -0.35 16 12 C -0.14 0.65 7.39 -25.92 -0.19 0.46 16 13 C -0.13 0.47 3.96 -89.81 -0.36 0.12 16 14 H 0.10 -0.25 8.14 -51.92 -0.42 -0.67 16 15 C 0.12 -0.47 5.99 -4.04 -0.02 -0.49 16 16 N -0.46 0.24 2.75 -118.58 -0.33 -0.09 16 17 C -0.06 -0.02 11.58 -16.56 -0.19 -0.21 16 18 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 19 N -0.50 -2.32 11.25 -14.67 -0.16 -2.48 16 20 C 0.18 0.27 12.56 -90.38 -1.14 -0.87 16 21 C -0.15 0.38 7.43 -25.92 -0.19 0.19 16 22 C 0.03 -0.06 11.61 30.08 0.35 0.28 16 23 O -0.16 0.00 8.90 7.66 0.07 0.06 16 24 H 0.39 -1.58 8.74 45.56 0.40 -1.18 16 25 H 0.10 -0.31 7.96 -51.93 -0.41 -0.73 16 26 H -0.25 0.07 7.11 56.52 0.40 0.48 16 27 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 28 H 0.16 0.41 8.06 -52.49 -0.42 -0.01 16 29 H 0.40 -2.16 7.70 -40.82 -0.31 -2.48 16 30 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 31 H 0.09 -0.59 8.08 -51.93 -0.42 -1.01 16 32 H 0.10 -0.48 8.14 -51.93 -0.42 -0.90 16 33 H 0.10 -0.52 7.85 -51.93 -0.41 -0.92 16 34 H 0.17 -0.41 8.06 -52.48 -0.42 -0.84 16 35 H 0.17 0.16 8.06 -52.48 -0.42 -0.26 16 36 H 0.20 -0.30 8.06 -52.49 -0.42 -0.72 16 37 H 0.09 -0.32 7.90 -51.93 -0.41 -0.73 16 38 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 39 H 0.21 -1.49 7.47 -52.48 -0.39 -1.88 16 LS Contribution 342.80 15.07 5.17 5.17 Total: 0.00 -12.60 342.80 -9.81 -22.40 By element: Atomic # 1 Polarization: -8.65 SS G_CDS: -4.93 Total: -13.58 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.51 Total: -1.92 kcal Atomic # 7 Polarization: -0.64 SS G_CDS: -0.78 Total: -1.42 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.30 Total: -3.99 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -5.46 Total: -6.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -12.60 -9.81 -22.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.114 kcal (2) G-P(sol) polarization free energy of solvation -12.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds