Wall clock time and date at job start Sun Mar 7 2021 01:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86305 * 109.46995 * 2 1 4 4 C 1.50702 * 109.47182 * 119.99510 * 2 1 3 5 5 C 1.34180 * 125.43164 * 65.27223 * 4 2 1 6 6 C 1.47027 * 105.94922 * 180.12493 * 5 4 2 7 7 C 1.47375 * 127.18903 * 179.89318 * 6 5 4 8 8 O 1.21610 * 120.00322 * 359.43151 * 7 6 5 9 9 N 1.34784 * 119.99840 * 179.70488 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72634 * 9 7 6 11 11 H 1.08994 * 112.85555 * 23.80061 * 10 9 7 12 12 C 1.53777 * 113.61200 * 155.00334 * 10 9 7 13 13 C 1.53781 * 87.08274 * 139.97613 * 12 10 9 14 14 H 1.09007 * 113.61465 * 89.11410 * 13 12 10 15 15 C 1.52996 * 113.61556 * 219.92831 * 13 12 10 16 16 N 1.46500 * 109.47253 * 184.99794 * 15 13 12 17 17 C 1.36878 * 126.39618 * 90.00303 * 16 15 13 18 18 C 1.34671 * 106.82023 * 180.02562 * 17 16 15 19 19 N 1.34122 * 108.01796 * 359.97438 * 18 17 16 20 20 C 1.30502 * 109.25647 * 359.72972 * 19 18 17 21 21 C 1.53775 * 87.07928 * 334.56404 * 13 12 10 22 22 C 1.36415 * 105.61416 * 359.62571 * 6 5 4 23 23 O 1.33648 * 108.40122 * 0.23205 * 22 6 5 24 24 H 0.96701 * 114.00071 * 60.00338 * 1 2 3 25 25 H 1.08994 * 109.47388 * 239.99946 * 2 1 3 26 26 H 1.48499 * 109.99897 * 298.68120 * 3 2 1 27 27 H 1.48501 * 110.00082 * 59.99675 * 3 2 1 28 28 H 1.07998 * 127.02909 * 359.97438 * 5 4 2 29 29 H 0.97005 * 119.99846 * 359.72422 * 9 7 6 30 30 H 1.09003 * 113.61102 * 254.52380 * 12 10 9 31 31 H 1.08994 * 113.61778 * 25.42685 * 12 10 9 32 32 H 1.08994 * 109.47611 * 305.00306 * 15 13 12 33 33 H 1.09007 * 109.46944 * 64.99990 * 15 13 12 34 34 H 1.08007 * 126.58986 * 359.96658 * 17 16 15 35 35 H 1.08004 * 125.99114 * 180.02562 * 18 17 16 36 36 H 1.08001 * 125.65050 * 180.29186 * 20 19 18 37 37 H 1.08997 * 113.61959 * 270.88049 * 21 13 12 38 38 H 1.09002 * 113.61358 * 139.97938 * 21 13 12 39 39 H 1.08006 * 125.79736 * 180.22404 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.7595 -2.0132 1.5013 6 6 2.4123 -2.2460 2.7980 7 6 2.5005 -3.5191 3.5351 8 8 1.9889 -4.5231 3.0780 9 7 3.1435 -3.5693 4.7186 10 6 3.2261 -4.8335 5.4542 11 1 3.1195 -5.7061 4.8098 12 6 4.4308 -4.9145 6.4065 13 6 3.4915 -5.6046 7.4097 14 1 3.4567 -6.6886 7.3008 15 6 3.7076 -5.1596 8.8575 16 7 2.8551 -5.9544 9.7451 17 6 3.1882 -7.1385 10.3454 18 6 2.1196 -7.5227 11.0693 19 7 1.1603 -6.5980 10.9156 20 6 1.5959 -5.6526 10.1286 21 6 2.3338 -4.8772 6.7060 22 6 2.9244 -1.0385 3.1732 23 8 2.6268 -0.1419 2.2279 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5138 -0.8899 26 1 1.5878 2.4586 -1.2242 27 1 1.5614 2.4680 1.2085 28 1 1.2445 -2.7416 0.8925 29 1 3.5517 -2.7684 5.0832 30 1 5.2316 -5.5590 6.0437 31 1 4.7886 -3.9411 6.7417 32 1 4.7526 -5.3060 9.1305 33 1 3.4508 -4.1048 8.9556 34 1 4.1274 -7.6643 10.2550 35 1 2.0480 -8.4179 11.6692 36 1 1.0404 -4.7755 9.8309 37 1 2.1182 -3.8935 7.1231 38 1 1.4415 -5.4915 6.5849 39 1 3.4764 -0.8408 4.0802 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:28:02 Heat of formation + Delta-G solvation = 47.571417 kcal Electronic energy + Delta-G solvation = -23546.765942 eV Core-core repulsion = 19846.187687 eV Total energy + Delta-G solvation = -3700.578255 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.72389 -42.93677 -41.10540 -39.41896 -38.09086 -35.47578 -34.35627 -33.64429 -31.88929 -30.38086 -28.83230 -26.76364 -26.68114 -25.47685 -23.40776 -22.28487 -22.24169 -21.72360 -21.26367 -20.39044 -18.97572 -18.78449 -18.41547 -17.50483 -17.22665 -17.10972 -16.33120 -16.19616 -16.00050 -15.80900 -15.72009 -15.30909 -14.89887 -14.81311 -14.27033 -14.21293 -14.07869 -14.05929 -13.71317 -13.50227 -13.41781 -12.97119 -12.82666 -12.25688 -12.15067 -11.97184 -11.49655 -11.21701 -10.98125 -10.89965 -10.65434 -10.48694 -10.13821 -9.77873 -9.43663 -4.92745 0.25209 0.78207 1.16259 1.17384 1.46597 1.74729 1.92620 1.96601 2.08136 2.22523 2.24214 3.32725 3.39022 3.47820 3.49624 3.56631 3.70816 3.77377 3.89471 3.94317 4.09063 4.13003 4.17492 4.27998 4.39496 4.48090 4.50307 4.61925 4.71470 4.74996 4.79093 4.82635 4.88967 4.95941 5.04318 5.11595 5.17710 5.36851 5.53146 5.84091 5.84520 6.33508 6.47636 6.49417 7.14971 7.17555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.053 4.053 3 Si 0.789 3.211 4 C -0.015 4.015 5 C -0.153 4.153 6 C -0.271 4.271 7 C 0.587 3.413 8 O -0.590 6.590 9 N -0.696 5.696 10 C 0.114 3.886 11 H 0.086 0.914 12 C -0.112 4.112 13 C -0.117 4.117 14 H 0.085 0.915 15 C 0.115 3.885 16 N -0.453 5.453 17 C -0.048 4.048 18 C -0.069 4.069 19 N -0.549 5.549 20 C 0.175 3.825 21 C -0.147 4.147 22 C 0.069 3.931 23 O -0.168 6.168 24 H 0.405 0.595 25 H 0.121 0.879 26 H -0.270 1.270 27 H -0.303 1.303 28 H 0.143 0.857 29 H 0.419 0.581 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.201 0.799 35 H 0.171 0.829 36 H 0.223 0.777 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 6.699 -1.215 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.160 4.160 3 Si 0.691 3.309 4 C -0.063 4.063 5 C -0.173 4.173 6 C -0.275 4.275 7 C 0.376 3.624 8 O -0.472 6.472 9 N -0.348 5.348 10 C 0.009 3.991 11 H 0.104 0.896 12 C -0.151 4.151 13 C -0.137 4.137 14 H 0.103 0.897 15 C -0.006 4.006 16 N -0.135 5.135 17 C -0.181 4.181 18 C -0.215 4.215 19 N -0.268 5.268 20 C -0.108 4.108 21 C -0.186 4.186 22 C -0.001 4.001 23 O -0.063 6.063 24 H 0.257 0.743 25 H 0.138 0.862 26 H -0.196 1.196 27 H -0.230 1.230 28 H 0.161 0.839 29 H 0.258 0.742 30 H 0.105 0.895 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.218 0.782 35 H 0.188 0.812 36 H 0.239 0.761 37 H 0.127 0.873 38 H 0.065 0.935 39 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 8.958 6.869 -0.754 11.313 hybrid contribution -0.930 -0.663 -0.762 1.373 sum 8.028 6.206 -1.516 10.260 Atomic orbital electron populations 1.86526 1.17771 1.81072 1.51733 1.24226 0.84508 1.13535 0.93746 0.93560 0.89857 0.70379 0.77081 1.21329 1.01061 0.91677 0.92255 1.22560 1.02108 0.96035 0.96579 1.21480 1.11452 0.95211 0.99360 1.17556 0.77283 0.86680 0.80905 1.90789 1.48949 1.37768 1.69688 1.45608 1.56068 1.13221 1.19856 1.22489 0.98527 0.86865 0.91231 0.89611 1.23305 0.95552 1.03219 0.93011 1.22637 0.97578 1.00325 0.93140 0.89680 1.22209 0.95719 0.96112 0.86598 1.45764 1.13512 1.18397 1.35796 1.23161 1.02814 0.90556 1.01601 1.22637 0.91450 1.01545 1.05903 1.70232 1.32218 1.04749 1.19566 1.25398 0.85035 1.01553 0.98800 1.23613 0.97180 1.01821 0.95967 1.25380 0.96920 0.84862 0.92945 1.83699 1.57057 1.39155 1.26413 0.74251 0.86193 1.19562 1.23006 0.83901 0.74212 0.89536 0.85731 0.86538 0.86258 0.78185 0.81184 0.76075 0.87348 0.93502 0.71541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.90 12.86 -148.98 -1.92 -2.81 16 2 C -0.05 0.08 2.96 71.24 0.21 0.30 16 3 Si 0.79 -3.02 32.09 68.60 2.20 -0.82 16 4 C -0.02 -0.04 6.22 24.76 0.15 0.12 16 5 C -0.15 -0.99 10.90 23.65 0.26 -0.73 16 6 C -0.27 -0.69 6.31 -18.99 -0.12 -0.81 16 7 C 0.59 3.13 7.81 86.65 0.68 3.81 16 8 O -0.59 -9.72 16.58 -4.06 -0.07 -9.79 16 9 N -0.70 3.36 5.35 -443.35 -2.37 0.99 16 10 C 0.11 -0.46 4.24 45.52 0.19 -0.27 16 11 H 0.09 0.27 7.46 -2.39 -0.02 0.25 16 12 C -0.11 1.35 7.39 31.12 0.23 1.58 16 13 C -0.12 1.04 3.96 -10.27 -0.04 1.00 16 14 H 0.08 -0.40 8.14 -2.38 -0.02 -0.42 16 15 C 0.11 -1.24 5.99 86.38 0.52 -0.72 16 16 N -0.45 0.96 2.75 -529.07 -1.46 -0.50 16 17 C -0.05 -0.01 11.58 83.09 0.96 0.95 16 18 C -0.07 -0.46 11.87 83.52 0.99 0.53 16 19 N -0.55 -5.88 11.25 -200.31 -2.25 -8.13 16 20 C 0.17 0.52 12.56 180.26 2.26 2.78 16 21 C -0.15 0.79 7.43 31.12 0.23 1.02 16 22 C 0.07 -0.41 11.61 67.39 0.78 0.38 16 23 O -0.17 0.18 8.90 4.50 0.04 0.22 16 24 H 0.41 -3.09 8.74 -74.06 -0.65 -3.74 16 25 H 0.12 -0.79 7.96 -2.39 -0.02 -0.81 16 26 H -0.27 0.32 7.11 99.48 0.71 1.03 16 27 H -0.30 -1.44 7.11 99.48 0.71 -0.73 16 28 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.42 -5.85 7.70 -92.70 -0.71 -6.56 16 30 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.12 -2.23 8.08 -2.39 -0.02 -2.25 16 32 H 0.12 -1.65 8.14 -2.39 -0.02 -1.67 16 33 H 0.12 -1.78 7.85 -2.38 -0.02 -1.80 16 34 H 0.20 -1.28 8.06 -2.91 -0.02 -1.31 16 35 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.22 -0.77 8.06 -2.91 -0.02 -0.79 16 37 H 0.11 -1.01 7.90 -2.39 -0.02 -1.03 16 38 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.27 -5.00 7.47 -2.91 -0.02 -5.02 16 Total: 0.00 -36.08 342.80 1.26 -34.83 By element: Atomic # 1 Polarization: -23.66 SS G_CDS: -0.23 Total: -23.90 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 7.31 Total: 9.92 kcal Atomic # 7 Polarization: -1.57 SS G_CDS: -6.08 Total: -7.65 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.94 Total: -12.38 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.20 Total: -0.82 kcal Total: -36.08 1.26 -34.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.397 kcal (2) G-P(sol) polarization free energy of solvation -36.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds