Wall clock time and date at job start Sun Mar 7 2021 01:28:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42901 * 1
3 3 Si 1.86296 * 109.47422 * 2 1
4 4 C 1.50707 * 109.46672 * 240.00424 * 2 1 3
5 5 C 1.38714 * 120.02488 * 284.99597 * 4 2 1
6 6 O 1.35902 * 120.05891 * 359.97438 * 5 4 2
7 7 C 1.42895 * 117.00017 * 179.97438 * 6 5 4
8 8 C 1.50701 * 109.46838 * 179.97438 * 7 6 5
9 9 O 1.21280 * 120.00269 * 0.02562 * 8 7 6
10 10 N 1.34781 * 119.99932 * 179.97438 * 8 7 6
11 11 C 1.46500 * 119.99985 * 179.97438 * 10 8 7
12 12 H 1.09002 * 112.85221 * 334.67013 * 11 10 8
13 13 C 1.53785 * 113.68813 * 105.94035 * 11 10 8
14 14 C 1.53779 * 87.08093 * 139.99098 * 13 11 10
15 15 H 1.09005 * 113.69135 * 89.12376 * 14 13 11
16 16 C 1.52999 * 113.61451 * 220.01770 * 14 13 11
17 17 N 1.46504 * 109.47047 * 272.49902 * 16 14 13
18 18 C 1.36877 * 126.39660 * 89.99677 * 17 16 14
19 19 C 1.34667 * 106.81652 * 180.02562 * 18 17 16
20 20 N 1.34125 * 108.02343 * 0.02562 * 19 18 17
21 21 C 1.30500 * 109.25261 * 359.72607 * 20 19 18
22 22 C 1.53781 * 113.61339 * 203.47543 * 11 10 8
23 23 C 1.38751 * 119.88467 * 180.25234 * 5 4 2
24 24 C 1.38125 * 119.94567 * 359.43164 * 23 5 4
25 25 C 1.38284 * 120.05463 * 0.59368 * 24 23 5
26 26 C 1.38165 * 120.02947 * 104.97712 * 4 2 1
27 27 H 0.96699 * 114.00566 * 59.99485 * 1 2 3
28 28 H 1.08999 * 109.47378 * 120.00905 * 2 1 3
29 29 H 1.48504 * 110.00052 * 60.00185 * 3 2 1
30 30 H 1.48492 * 110.00235 * 181.32329 * 3 2 1
31 31 H 1.08997 * 109.47351 * 60.00259 * 7 6 5
32 32 H 1.08994 * 109.47217 * 299.99197 * 7 6 5
33 33 H 0.96998 * 119.99866 * 0.02562 * 10 8 7
34 34 H 1.09003 * 113.60734 * 254.54218 * 13 11 10
35 35 H 1.08996 * 113.61146 * 25.43716 * 13 11 10
36 36 H 1.09003 * 109.47100 * 32.49589 * 16 14 13
37 37 H 1.08995 * 109.47213 * 152.50009 * 16 14 13
38 38 H 1.08003 * 126.59665 * 359.97073 * 18 17 16
39 39 H 1.08005 * 125.99197 * 180.02562 * 19 18 17
40 40 H 1.08007 * 125.65108 * 180.29310 * 21 20 19
41 41 H 1.09005 * 113.61302 * 334.48230 * 22 11 10
42 42 H 1.08996 * 113.61527 * 105.30394 * 22 11 10
43 43 H 1.08002 * 120.02769 * 179.70199 * 23 5 4
44 44 H 1.07994 * 119.97154 * 180.29521 * 24 23 5
45 45 H 1.07999 * 119.94409 * 179.69991 * 25 24 23
46 46 H 1.07999 * 119.96827 * 0.02562 * 26 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0501 1.7564 0.0000
4 6 1.9313 -0.7104 -1.2306
5 6 1.8696 -2.0940 -1.3071
6 8 1.3568 -2.8108 -0.2726
7 6 1.3241 -4.2316 -0.4210
8 6 0.7281 -4.8523 0.8162
9 8 0.3664 -4.1472 1.7344
10 7 0.5959 -6.1908 0.9019
11 6 0.0171 -6.7942 2.1049
12 1 0.1371 -6.1708 2.9909
13 6 -1.4168 -7.3137 1.9067
14 6 -1.0139 -8.5223 2.7680
15 1 -1.1754 -8.3727 3.8356
16 6 -1.5792 -9.8510 2.2621
17 7 -2.9104 -10.0652 2.8350
18 6 -4.1018 -9.6638 2.2937
19 6 -5.0690 -10.0618 3.1420
20 7 -4.4841 -10.6885 4.1736
21 6 -3.1916 -10.6991 3.9938
22 6 0.4338 -8.2586 2.3211
23 6 2.3376 -2.7454 -2.4393
24 6 2.8528 -2.0143 -3.4919
25 6 2.9136 -0.6351 -3.4130
26 6 2.4531 0.0160 -2.2837
27 1 -0.3934 0.4417 -0.7650
28 1 1.7924 -0.5140 0.8899
29 1 1.5616 2.4679 1.2085
30 1 3.5346 1.7702 -0.0322
31 1 2.3381 -4.6057 -0.5621
32 1 0.7166 -4.4926 -1.2874
33 1 0.8848 -6.7547 0.1675
34 1 -2.1771 -6.6831 2.3676
35 1 -1.6488 -7.5716 0.8735
36 1 -1.6516 -9.8246 1.1748
37 1 -0.9191 -10.6646 2.5626
38 1 -4.2397 -9.1298 1.3651
39 1 -6.1297 -9.9040 3.0142
40 1 -2.4666 -11.1400 4.6620
41 1 0.7076 -8.7751 1.4010
42 1 1.1683 -8.3909 3.1154
43 1 2.2951 -3.8229 -2.4993
44 1 3.2128 -2.5206 -4.3753
45 1 3.3213 -0.0655 -4.2350
46 1 2.5014 1.0933 -2.2245
There are 63 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 63
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_14468608_2989392.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 01:28:21
Heat of formation + Delta-G solvation = 24.912252 kcal
Electronic energy + Delta-G solvation = -28769.915114 eV
Core-core repulsion = 24629.052905 eV
Total energy + Delta-G solvation = -4140.862209 eV
No. of doubly occupied orbitals = 63
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.95350 -41.71466 -41.09980 -39.70814 -38.39348 -37.39103 -35.52382 -34.12162
-32.76209 -31.37877 -30.41916 -29.83468 -28.50978 -27.04345 -26.63947 -24.59643
-23.34549 -22.63875 -22.23582 -21.90120 -21.66025 -20.91144 -19.52614 -18.64290
-18.26457 -17.95900 -17.55317 -17.39190 -16.92124 -16.61250 -16.57649 -16.07308
-15.82383 -15.59353 -15.40126 -15.19904 -15.03087 -14.89742 -14.83209 -14.40390
-14.15963 -14.10079 -13.85915 -13.80703 -13.68344 -13.56766 -13.10056 -13.04970
-12.55285 -12.40731 -12.26392 -12.18816 -11.98934 -11.71172 -11.70014 -10.94643
-10.82727 -10.50642 -10.26983 -10.25853 -10.04578 -9.40048 -9.26588 -4.98813
0.15890 0.34738 1.14582 1.36724 1.38564 1.40433 1.70505 1.79716
2.05924 2.34157 2.48351 2.62787 3.07098 3.17249 3.35544 3.41986
3.49203 3.55939 3.70601 3.73354 3.77778 3.81666 3.84938 3.85360
3.90899 3.97248 3.99560 4.11348 4.20316 4.28677 4.32951 4.44584
4.46081 4.49505 4.57947 4.64058 4.67315 4.77947 4.82829 4.91364
4.95532 5.19738 5.26053 5.28504 5.33675 5.42116 5.62896 5.86087
6.15378 6.26419 6.30762 6.75164 7.01664 7.21570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.532 6.532
2 C -0.057 4.057
3 Si 0.682 3.318
4 C -0.149 4.149
5 C 0.150 3.850
6 O -0.278 6.278
7 C 0.039 3.961
8 C 0.516 3.484
9 O -0.506 6.506
10 N -0.719 5.719
11 C 0.127 3.873
12 H 0.118 0.882
13 C -0.146 4.146
14 C -0.126 4.126
15 H 0.104 0.896
16 C 0.117 3.883
17 N -0.458 5.458
18 C -0.054 4.054
19 C -0.030 4.030
20 N -0.495 5.495
21 C 0.180 3.820
22 C -0.136 4.136
23 C -0.212 4.212
24 C -0.073 4.073
25 C -0.151 4.151
26 C -0.075 4.075
27 H 0.373 0.627
28 H 0.113 0.887
29 H -0.254 1.254
30 H -0.257 1.257
31 H 0.093 0.907
32 H 0.094 0.906
33 H 0.402 0.598
34 H 0.077 0.923
35 H 0.088 0.912
36 H 0.093 0.907
37 H 0.097 0.903
38 H 0.172 0.828
39 H 0.169 0.831
40 H 0.203 0.797
41 H 0.092 0.908
42 H 0.084 0.916
43 H 0.129 0.871
44 H 0.129 0.871
45 H 0.131 0.869
46 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.721 -2.054 -8.448 9.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.336 6.336
2 C -0.168 4.168
3 Si 0.584 3.416
4 C -0.150 4.150
5 C 0.104 3.896
6 O -0.190 6.190
7 C -0.040 4.040
8 C 0.300 3.700
9 O -0.379 6.379
10 N -0.373 5.373
11 C 0.022 3.978
12 H 0.136 0.864
13 C -0.185 4.185
14 C -0.145 4.145
15 H 0.122 0.878
16 C -0.006 4.006
17 N -0.141 5.141
18 C -0.187 4.187
19 C -0.178 4.178
20 N -0.213 5.213
21 C -0.103 4.103
22 C -0.174 4.174
23 C -0.231 4.231
24 C -0.091 4.091
25 C -0.169 4.169
26 C -0.092 4.092
27 H 0.219 0.781
28 H 0.131 0.869
29 H -0.179 1.179
30 H -0.182 1.182
31 H 0.111 0.889
32 H 0.112 0.888
33 H 0.237 0.763
34 H 0.096 0.904
35 H 0.106 0.894
36 H 0.111 0.889
37 H 0.116 0.884
38 H 0.189 0.811
39 H 0.186 0.814
40 H 0.220 0.780
41 H 0.110 0.890
42 H 0.102 0.898
43 H 0.147 0.853
44 H 0.147 0.853
45 H 0.149 0.851
46 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 4.674 -1.472 -5.972 7.725
hybrid contribution 0.786 -0.851 -1.185 1.657
sum 5.460 -2.323 -7.157 9.297
Atomic orbital electron populations
1.86605 1.16928 1.81478 1.48592 1.24939 0.85388 1.09275 0.97195
0.95230 0.81023 0.77842 0.87515 1.19744 1.05609 0.91080 0.98562
1.18801 0.93155 0.90855 0.86745 1.86241 1.77460 1.16776 1.38511
1.22471 1.02441 0.81524 0.97564 1.20086 0.78963 0.82589 0.88316
1.90811 1.47051 1.60973 1.39016 1.45786 1.64909 1.06247 1.20341
1.22482 0.93136 0.93107 0.89026 0.86384 1.23568 0.97722 0.96783
1.00422 1.22794 0.96346 0.94047 1.01361 0.87803 1.21901 0.81236
0.98118 0.99331 1.45565 1.06975 1.42636 1.18959 1.22720 0.84823
1.08351 1.02789 1.22358 0.99755 1.03062 0.92618 1.70318 1.05072
1.20272 1.25619 1.25042 0.94503 1.01348 0.89377 1.23366 0.96236
0.95119 1.02707 1.21289 1.06513 1.00396 0.94909 1.21023 0.96333
0.94109 0.97643 1.21083 1.02639 0.94586 0.98608 1.20869 0.96681
0.99143 0.92517 0.78051 0.86924 1.17859 1.18185 0.88915 0.88791
0.76313 0.90433 0.89379 0.88852 0.88432 0.81116 0.81395 0.78028
0.88951 0.89780 0.85326 0.85329 0.85148 0.84657
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.53 -1.61 12.88 -35.23 -0.45 -2.06 16
2 C -0.06 -0.13 2.38 36.01 0.09 -0.04 16
3 Si 0.68 0.17 29.92 -169.99 -5.09 -4.92 16
4 C -0.15 -0.23 5.27 -104.47 -0.55 -0.78 16
5 C 0.15 0.29 6.66 -39.22 -0.26 0.03 16
6 O -0.28 -0.91 9.00 -39.34 -0.35 -1.26 16
7 C 0.04 -0.04 5.22 36.01 0.19 0.15 16
8 C 0.52 0.59 7.91 -10.98 -0.09 0.50 16
9 O -0.51 -3.35 16.12 -14.35 -0.23 -3.58 16
10 N -0.72 1.91 5.36 -53.01 -0.28 1.63 16
11 C 0.13 -0.28 4.22 -67.12 -0.28 -0.56 16
12 H 0.12 0.04 7.50 -51.93 -0.39 -0.35 16
13 C -0.15 0.38 7.43 -25.92 -0.19 0.19 16
14 C -0.13 0.48 3.96 -89.81 -0.36 0.13 16
15 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16
16 C 0.12 -0.48 5.99 -4.04 -0.02 -0.50 16
17 N -0.46 0.28 2.75 -118.57 -0.33 -0.05 16
18 C -0.05 -0.02 11.58 -16.56 -0.19 -0.22 16
19 C -0.03 -0.08 11.87 -17.81 -0.21 -0.30 16
20 N -0.49 -2.25 11.25 -14.66 -0.16 -2.42 16
21 C 0.18 0.22 12.56 -90.38 -1.14 -0.91 16
22 C -0.14 0.66 7.39 -25.92 -0.19 0.47 16
23 C -0.21 0.10 9.04 -39.43 -0.36 -0.26 16
24 C -0.07 0.09 10.04 -39.61 -0.40 -0.31 16
25 C -0.15 0.17 10.04 -39.56 -0.40 -0.22 16
26 C -0.07 0.04 8.66 -39.61 -0.34 -0.30 16
27 H 0.37 -0.58 8.70 45.56 0.40 -0.18 16
28 H 0.11 0.48 7.83 -51.93 -0.41 0.08 16
29 H -0.25 -0.93 7.11 56.52 0.40 -0.53 16
30 H -0.26 -0.62 7.11 56.52 0.40 -0.22 16
31 H 0.09 -0.33 7.65 -51.93 -0.40 -0.73 16
32 H 0.09 -0.33 7.68 -51.93 -0.40 -0.73 16
33 H 0.40 -2.45 8.71 -40.82 -0.36 -2.81 16
34 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16
35 H 0.09 -0.32 7.90 -51.93 -0.41 -0.73 16
36 H 0.09 -0.48 7.84 -51.93 -0.41 -0.89 16
37 H 0.10 -0.53 8.14 -51.93 -0.42 -0.96 16
38 H 0.17 -0.36 8.06 -52.48 -0.42 -0.78 16
39 H 0.17 0.18 8.06 -52.48 -0.42 -0.24 16
40 H 0.20 -0.40 8.06 -52.48 -0.42 -0.83 16
41 H 0.09 -0.60 8.07 -51.93 -0.42 -1.02 16
42 H 0.08 -0.39 8.14 -51.93 -0.42 -0.82 16
43 H 0.13 -0.39 6.30 -52.49 -0.33 -0.72 16
44 H 0.13 -0.42 8.06 -52.49 -0.42 -0.85 16
45 H 0.13 -0.42 8.06 -52.49 -0.42 -0.84 16
46 H 0.14 -0.40 5.13 -52.49 -0.27 -0.67 16
LS Contribution 387.88 15.07 5.85 5.85
Total: 0.00 -13.55 387.88 -12.15 -25.71
By element:
Atomic # 1 Polarization: -9.56 SS G_CDS: -6.39 Total: -15.95 kcal
Atomic # 6 Polarization: 1.77 SS G_CDS: -4.71 Total: -2.94 kcal
Atomic # 7 Polarization: -0.06 SS G_CDS: -0.78 Total: -0.84 kcal
Atomic # 8 Polarization: -5.86 SS G_CDS: -1.04 Total: -6.90 kcal
Atomic # 14 Polarization: 0.17 SS G_CDS: -5.09 Total: -4.92 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -13.55 -12.15 -25.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_14468608_2989392.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.618 kcal
(2) G-P(sol) polarization free energy of solvation -13.554 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.063 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.151 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.912 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds