Wall clock time and date at job start Sun Mar 7 2021 01:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.46983 * 2 1 4 4 C 1.50691 * 109.47556 * 120.00291 * 2 1 3 5 5 C 1.38242 * 119.97499 * 245.00048 * 4 2 1 6 6 C 1.38294 * 120.11298 * 179.97438 * 5 4 2 7 7 C 1.38119 * 120.05518 * 359.97438 * 6 5 4 8 8 C 1.38758 * 119.94417 * 0.02928 * 7 6 5 9 9 O 1.35901 * 120.05109 * 179.97438 * 8 7 6 10 10 C 1.42900 * 117.00282 * 0.02562 * 9 8 7 11 11 C 1.50706 * 109.46760 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00265 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99456 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99688 * 179.97438 * 13 11 10 15 15 H 1.09006 * 112.90768 * 23.74435 * 14 13 11 16 16 C 1.53778 * 113.61732 * 154.99621 * 14 13 11 17 17 C 1.53781 * 87.08382 * 139.97957 * 16 14 13 18 18 H 1.08995 * 113.61079 * 89.19982 * 17 16 14 19 19 C 1.53001 * 113.61510 * 220.02397 * 17 16 14 20 20 N 1.46499 * 109.47021 * 185.00220 * 19 17 16 21 21 C 1.36879 * 126.39849 * 89.99861 * 20 19 17 22 22 C 1.34675 * 106.81522 * 179.97438 * 21 20 19 23 23 N 1.34124 * 108.02139 * 0.02562 * 22 21 20 24 24 C 1.30503 * 109.25583 * 359.97438 * 23 22 21 25 25 C 1.53782 * 113.61421 * 252.49494 * 14 13 11 26 26 C 1.38172 * 119.97371 * 65.29925 * 4 2 1 27 27 H 0.96706 * 114.00254 * 59.99684 * 1 2 3 28 28 H 1.09006 * 109.46790 * 240.00639 * 2 1 3 29 29 H 1.48497 * 109.99885 * 60.00422 * 3 2 1 30 30 H 1.48504 * 109.99986 * 181.31770 * 3 2 1 31 31 H 1.08000 * 119.94151 * 0.02562 * 5 4 2 32 32 H 1.07998 * 119.96739 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.03106 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47172 * 60.00163 * 10 9 8 35 35 H 1.08996 * 109.47235 * 299.99521 * 10 9 8 36 36 H 0.96998 * 120.00580 * 359.97438 * 13 11 10 37 37 H 1.09008 * 113.60997 * 25.43381 * 16 14 13 38 38 H 1.09001 * 113.69302 * 254.54333 * 16 14 13 39 39 H 1.08996 * 109.47418 * 64.99849 * 19 17 16 40 40 H 1.09002 * 109.46934 * 304.99680 * 19 17 16 41 41 H 1.07999 * 126.59366 * 0.22329 * 21 20 19 42 42 H 1.07993 * 125.98561 * 179.97438 * 22 21 20 43 43 H 1.07997 * 125.64670 * 180.02562 * 24 23 22 44 44 H 1.08998 * 113.61547 * 105.46944 * 25 14 13 45 45 H 1.09006 * 113.61108 * 334.56573 * 25 14 13 46 46 H 1.07999 * 120.02606 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 2.6388 -0.0118 2.1908 6 6 3.1008 -0.6608 3.3213 7 6 2.8558 -2.0091 3.4935 8 6 2.1460 -2.7126 2.5309 9 8 1.9042 -4.0395 2.6979 10 6 2.4096 -4.6462 3.8890 11 6 2.0479 -6.1091 3.8998 12 8 1.4189 -6.5852 2.9786 13 7 2.4226 -6.8882 4.9338 14 6 2.0706 -8.3102 4.9447 15 1 1.8917 -8.7107 3.9468 16 6 3.0187 -9.1732 5.7939 17 6 1.7716 -9.9387 6.2667 18 1 1.5120 -10.7852 5.6310 19 6 1.8006 -10.2989 7.7534 20 7 0.6347 -11.1242 8.0787 21 6 0.5669 -12.4903 8.0277 22 6 -0.6798 -12.8329 8.4048 23 7 -1.3548 -11.7066 8.6781 24 6 -0.5737 -10.6791 8.4851 25 6 0.9685 -8.6643 5.9572 26 6 1.6900 -2.0609 1.3946 27 1 -0.3934 0.4418 -0.7651 28 1 1.7923 -0.5138 -0.8901 29 1 1.5615 2.4678 1.2085 30 1 3.5346 1.7703 -0.0321 31 1 2.8303 1.0429 2.0585 32 1 3.6528 -0.1126 4.0704 33 1 3.2164 -2.5154 4.3767 34 1 1.9726 -4.1570 4.7595 35 1 3.4940 -4.5402 3.9188 36 1 2.9253 -6.5074 5.6708 37 1 3.5187 -8.6196 6.5888 38 1 3.7057 -9.7796 5.2037 39 1 1.7773 -9.3863 8.3489 40 1 2.7120 -10.8542 7.9750 41 1 1.3617 -13.1642 7.7439 42 1 -1.0681 -13.8382 8.4741 43 1 -0.8483 -9.6443 8.6272 44 1 -0.0003 -8.8596 5.4975 45 1 0.9080 -7.9717 6.7967 46 1 1.1411 -2.6073 0.6418 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:29:10 Heat of formation + Delta-G solvation = 23.704244 kcal Electronic energy + Delta-G solvation = -28133.344090 eV Core-core repulsion = 23992.429498 eV Total energy + Delta-G solvation = -4140.914592 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.95345 -41.71097 -41.02785 -39.72974 -38.81317 -37.31793 -35.49746 -34.11156 -32.70844 -31.82329 -30.42127 -29.76081 -28.39669 -26.84445 -26.74808 -24.27541 -23.82905 -22.53324 -22.27619 -21.76978 -21.62760 -20.67509 -19.24378 -18.57807 -18.44234 -18.18754 -17.70420 -17.50675 -17.28981 -16.86009 -16.32142 -16.01836 -15.86325 -15.73857 -15.37696 -15.29816 -14.87351 -14.82417 -14.64194 -14.37101 -14.31524 -14.10525 -13.85961 -13.70284 -13.53319 -13.44538 -13.28030 -12.98257 -12.45955 -12.34493 -12.23683 -12.17230 -11.99996 -11.86288 -11.52380 -11.06294 -10.91409 -10.50437 -10.40405 -10.17972 -10.02388 -9.45107 -9.43988 -4.93521 0.05658 0.21426 1.14315 1.24752 1.35512 1.44277 1.64985 1.93131 1.95319 2.22849 2.48423 2.53013 3.33992 3.37834 3.44279 3.46647 3.67395 3.69369 3.74324 3.79166 3.85102 3.88170 3.94946 4.02318 4.06797 4.10928 4.13486 4.16715 4.19347 4.37595 4.41344 4.54897 4.60480 4.68074 4.70399 4.76253 4.80398 4.83425 4.92230 5.00832 5.06606 5.12595 5.17656 5.28408 5.34921 5.46771 5.52976 5.82612 6.16349 6.31964 6.41193 6.86173 7.07714 7.16183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.091 4.091 3 Si 0.788 3.212 4 C -0.052 4.052 5 C -0.181 4.181 6 C -0.071 4.071 7 C -0.200 4.200 8 C 0.120 3.880 9 O -0.320 6.320 10 C 0.035 3.965 11 C 0.512 3.488 12 O -0.576 6.576 13 N -0.695 5.695 14 C 0.114 3.886 15 H 0.085 0.915 16 C -0.113 4.113 17 C -0.118 4.118 18 H 0.085 0.915 19 C 0.115 3.885 20 N -0.453 5.453 21 C -0.048 4.048 22 C -0.068 4.068 23 N -0.548 5.548 24 C 0.175 3.825 25 C -0.146 4.146 26 C -0.146 4.146 27 H 0.404 0.596 28 H 0.089 0.911 29 H -0.292 1.292 30 H -0.284 1.284 31 H 0.122 0.878 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.424 0.576 37 H 0.124 0.876 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.201 0.799 42 H 0.171 0.829 43 H 0.224 0.776 44 H 0.047 0.953 45 H 0.110 0.890 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.256 4.148 2.640 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.200 4.200 3 Si 0.692 3.308 4 C -0.052 4.052 5 C -0.198 4.198 6 C -0.089 4.089 7 C -0.218 4.218 8 C 0.075 3.925 9 O -0.233 6.233 10 C -0.043 4.043 11 C 0.298 3.702 12 O -0.455 6.455 13 N -0.349 5.349 14 C 0.009 3.991 15 H 0.103 0.897 16 C -0.152 4.152 17 C -0.138 4.138 18 H 0.103 0.897 19 C -0.006 4.006 20 N -0.135 5.135 21 C -0.182 4.182 22 C -0.214 4.214 23 N -0.267 5.267 24 C -0.107 4.107 25 C -0.185 4.185 26 C -0.165 4.165 27 H 0.255 0.745 28 H 0.107 0.893 29 H -0.220 1.220 30 H -0.211 1.211 31 H 0.140 0.860 32 H 0.177 0.823 33 H 0.186 0.814 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.263 0.737 37 H 0.142 0.858 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.218 0.782 42 H 0.188 0.812 43 H 0.240 0.760 44 H 0.066 0.934 45 H 0.128 0.872 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.589 4.063 3.041 9.976 hybrid contribution 0.573 -0.747 0.018 0.942 sum 9.162 3.316 3.059 10.213 Atomic orbital electron populations 1.86453 1.17260 1.82551 1.51322 1.25056 0.85965 1.12047 0.96931 0.94198 0.77306 0.74565 0.84695 1.19486 0.96973 0.92893 0.95890 1.21057 1.03039 0.99556 0.96191 1.21261 0.96951 0.94077 0.96623 1.21623 1.03576 0.95772 1.00877 1.19174 0.95712 0.82527 0.95085 1.86133 1.74567 1.20394 1.42193 1.22806 1.02754 0.90268 0.88461 1.20584 0.78760 0.88586 0.82235 1.90774 1.41017 1.75927 1.37738 1.45630 1.57299 1.09235 1.22749 1.22483 0.97443 0.79919 0.99255 0.89680 1.23304 0.95534 0.96822 0.99512 1.22645 0.98232 0.97170 0.95739 0.89700 1.22204 0.86583 0.96550 0.95296 1.45757 1.12460 1.06587 1.48672 1.23160 1.01134 0.84685 1.09243 1.22631 0.92939 0.98095 1.07770 1.70236 1.34143 0.99577 1.22788 1.25408 0.81911 1.00640 1.02785 1.23614 0.97586 0.97454 0.99845 1.20348 1.03869 0.94210 0.98028 0.74513 0.89285 1.21960 1.21145 0.86036 0.82251 0.81368 0.85633 0.85387 0.73702 0.85804 0.89663 0.86239 0.86640 0.78232 0.81190 0.76009 0.93381 0.87177 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.62 12.81 -148.98 -1.91 -3.53 16 2 C -0.09 -0.18 2.79 71.23 0.20 0.01 16 3 Si 0.79 -1.21 29.85 68.60 2.05 0.84 16 4 C -0.05 -0.38 5.38 -19.88 -0.11 -0.48 16 5 C -0.18 -0.93 8.67 22.28 0.19 -0.74 16 6 C -0.07 -0.06 10.04 22.25 0.22 0.17 16 7 C -0.20 0.01 9.04 22.37 0.20 0.21 16 8 C 0.12 0.77 6.69 22.51 0.15 0.92 16 9 O -0.32 -2.48 9.67 -73.40 -0.71 -3.19 16 10 C 0.03 -0.11 5.22 71.24 0.37 0.26 16 11 C 0.51 1.08 7.91 87.66 0.69 1.77 16 12 O -0.58 -8.63 16.10 16.00 0.26 -8.37 16 13 N -0.70 4.78 5.35 -440.02 -2.36 2.43 16 14 C 0.11 -0.57 4.24 45.52 0.19 -0.37 16 15 H 0.09 0.21 7.47 -2.38 -0.02 0.19 16 16 C -0.11 1.38 7.39 31.12 0.23 1.61 16 17 C -0.12 1.08 3.96 -10.27 -0.04 1.04 16 18 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 19 C 0.11 -1.26 5.99 86.38 0.52 -0.74 16 20 N -0.45 1.05 2.75 -529.07 -1.46 -0.41 16 21 C -0.05 -0.01 11.58 83.09 0.96 0.95 16 22 C -0.07 -0.45 11.87 83.53 0.99 0.55 16 23 N -0.55 -5.75 11.25 -200.32 -2.25 -8.00 16 24 C 0.18 0.46 12.56 180.26 2.26 2.73 16 25 C -0.15 0.90 7.43 31.12 0.23 1.13 16 26 C -0.15 -1.36 9.63 22.37 0.22 -1.14 16 27 H 0.40 -3.30 8.74 -74.05 -0.65 -3.95 16 28 H 0.09 -0.11 7.96 -2.38 -0.02 -0.13 16 29 H -0.29 -1.51 7.05 99.48 0.70 -0.81 16 30 H -0.28 -0.91 7.11 99.48 0.71 -0.20 16 31 H 0.12 0.48 4.86 -2.91 -0.01 0.47 16 32 H 0.16 -0.88 8.06 -2.91 -0.02 -0.90 16 33 H 0.17 -1.44 6.30 -2.91 -0.02 -1.46 16 34 H 0.13 -1.20 7.66 -2.39 -0.02 -1.22 16 35 H 0.13 -1.30 7.66 -2.39 -0.02 -1.31 16 36 H 0.42 -6.64 8.73 -92.71 -0.81 -7.45 16 37 H 0.12 -2.22 8.08 -2.38 -0.02 -2.24 16 38 H 0.08 -0.97 8.14 -2.39 -0.02 -0.99 16 39 H 0.12 -1.80 7.84 -2.39 -0.02 -1.82 16 40 H 0.12 -1.63 8.14 -2.39 -0.02 -1.65 16 41 H 0.20 -1.28 8.06 -2.91 -0.02 -1.30 16 42 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 43 H 0.22 -0.87 8.06 -2.91 -0.02 -0.90 16 44 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.11 -1.14 7.90 -2.38 -0.02 -1.16 16 46 H 0.12 1.32 8.06 -2.91 -0.02 1.30 16 Total: 0.00 -38.38 388.38 0.71 -37.67 By element: Atomic # 1 Polarization: -24.93 SS G_CDS: -0.41 Total: -25.34 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 7.49 Total: 7.89 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -6.07 Total: -5.98 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -2.36 Total: -15.08 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.05 Total: 0.84 kcal Total: -38.38 0.71 -37.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.379 kcal (2) G-P(sol) polarization free energy of solvation -38.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds