Wall clock time and date at job start Sun Mar 7 2021 04:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52989 * 109.46993 * 2 1 4 4 C 1.52998 * 109.46983 * 239.99730 * 2 1 3 5 5 O 1.45205 * 109.46974 * 120.00070 * 2 1 3 6 6 C 1.34642 * 116.99973 * 59.99798 * 5 2 1 7 7 O 1.21504 * 119.99900 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99501 * 179.97438 * 6 5 2 9 9 C 1.46494 * 119.99525 * 180.02562 * 8 6 5 10 10 H 1.09000 * 112.91148 * 23.75262 * 9 8 6 11 11 C 1.53786 * 113.61370 * 155.00031 * 9 8 6 12 12 C 1.53781 * 87.17350 * 140.02367 * 11 9 8 13 13 H 1.08999 * 113.61567 * 89.07405 * 12 11 9 14 14 C 1.50696 * 113.61615 * 219.89494 * 12 11 9 15 15 O 1.21287 * 119.99937 * 0.02562 * 14 12 11 16 16 N 1.34776 * 120.00258 * 180.02562 * 14 12 11 17 17 N 1.40103 * 120.00091 * 180.02562 * 16 14 12 18 18 C 1.34779 * 119.99725 * 180.02562 * 17 16 14 19 19 O 1.21690 * 120.00210 * 359.97438 * 18 17 16 20 20 C 1.46677 * 119.99290 * 179.97438 * 18 17 16 21 21 C 1.37879 * 126.22725 * 179.71125 * 20 18 17 22 22 C 1.39835 * 107.08172 * 179.90319 * 21 20 18 23 23 C 1.50706 * 126.06345 * 180.10203 * 22 21 20 24 24 O 1.42893 * 109.47309 * 65.28090 * 23 22 21 25 25 Si 1.86304 * 109.46808 * 185.28153 * 23 22 21 26 26 C 1.35448 * 107.86715 * 0.36209 * 22 21 20 27 27 N 1.35537 * 108.86974 * 359.77478 * 26 22 21 28 28 C 1.53781 * 87.08070 * 334.52830 * 12 11 9 29 29 H 1.08999 * 109.47197 * 299.99975 * 1 2 3 30 30 H 1.09000 * 109.47434 * 60.00288 * 1 2 3 31 31 H 1.09004 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47357 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47497 * 300.00010 * 3 2 1 34 34 H 1.09006 * 109.47404 * 60.00304 * 3 2 1 35 35 H 1.08997 * 109.47310 * 300.00166 * 4 2 1 36 36 H 1.09004 * 109.46775 * 60.00438 * 4 2 1 37 37 H 1.08999 * 109.46665 * 179.97438 * 4 2 1 38 38 H 0.97000 * 119.99938 * 0.02562 * 8 6 5 39 39 H 1.09002 * 113.61357 * 25.43283 * 11 9 8 40 40 H 1.09002 * 113.61608 * 254.61445 * 11 9 8 41 41 H 0.97001 * 119.99804 * 0.02562 * 16 14 12 42 42 H 0.96993 * 120.00005 * 359.97438 * 17 16 14 43 43 H 1.08001 * 126.45712 * 0.03718 * 21 20 18 44 44 H 1.08997 * 109.47058 * 305.27732 * 23 22 21 45 45 H 0.96699 * 114.00076 * 179.97438 * 24 23 22 46 46 H 1.48505 * 109.99705 * 178.68095 * 25 23 22 47 47 H 1.48501 * 109.99803 * 299.99785 * 25 23 22 48 48 H 1.07995 * 125.56229 * 179.77774 * 26 22 21 49 49 H 0.97004 * 125.67344 * 180.02562 * 27 26 22 50 50 H 1.09005 * 113.61471 * 139.98321 * 28 12 11 51 51 H 1.08996 * 113.61178 * 270.79663 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 1.6748 -4.0671 2.5827 10 1 1.4213 -4.5513 1.6396 11 6 2.6485 -4.8815 3.4509 12 6 1.4129 -5.5572 4.0685 13 1 1.0878 -6.4480 3.5308 14 6 1.5259 -5.7795 5.5546 15 8 2.5268 -5.4325 6.1453 16 7 0.5149 -6.3639 6.2275 17 7 0.6198 -6.5700 7.6093 18 6 -0.3911 -7.1549 8.2820 19 8 -1.3951 -7.5035 7.6893 20 6 -0.2810 -7.3711 9.7286 21 6 -1.2335 -7.9489 10.5410 22 6 -0.7154 -7.9570 11.8398 23 6 -1.4049 -8.4959 13.0667 24 8 -1.5732 -9.9089 12.9365 25 14 -0.3700 -8.1297 14.5719 26 6 0.5138 -7.3893 11.8004 27 7 0.7895 -7.0290 10.5232 28 6 0.6284 -4.2895 3.6912 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.6276 -2.2368 3.0829 39 1 3.2141 -4.2753 4.1585 40 1 3.2785 -5.5626 2.8788 41 1 -0.2855 -6.6417 5.7550 42 1 1.4202 -6.2925 8.0816 43 1 -2.1971 -8.3261 10.2320 44 1 -2.3808 -8.0221 13.1726 45 1 -2.0111 -10.3241 13.6921 46 1 -1.0543 -8.6280 15.7921 47 1 0.9632 -8.7703 14.4397 48 1 1.1673 -7.2470 12.6483 49 1 1.6057 -6.6015 10.2197 50 1 -0.3732 -4.4924 3.3120 51 1 0.6405 -3.5221 4.4651 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14472184_10543058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:16:28 Heat of formation + Delta-G solvation = -77.355753 kcal Electronic energy + Delta-G solvation = -34035.660018 eV Core-core repulsion = 29132.949884 eV Total energy + Delta-G solvation = -4902.710134 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.182 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.60122 -42.03878 -41.53290 -40.41140 -39.22876 -37.78915 -37.76685 -36.59455 -35.38135 -34.18233 -33.30351 -32.32915 -30.62275 -28.37014 -28.31135 -27.52755 -26.79426 -26.38310 -24.53253 -23.70924 -22.54694 -21.60846 -21.30857 -20.95120 -20.43190 -19.80928 -19.15587 -18.90733 -18.52446 -18.41687 -17.56557 -17.19901 -17.03142 -16.89515 -16.44399 -16.36018 -16.00262 -15.75586 -15.50552 -15.34186 -15.23985 -15.08275 -14.88260 -14.77961 -14.49969 -14.39036 -13.99086 -13.82539 -13.55343 -13.37915 -13.37317 -13.11463 -12.92888 -12.87383 -12.66804 -12.59311 -12.56491 -12.47592 -12.35752 -12.20853 -12.00436 -11.81682 -11.69329 -11.40054 -11.18157 -11.11084 -10.40225 -10.19778 -10.00679 -9.78197 -9.30449 -4.84217 0.19032 0.54144 1.15897 1.25857 1.36865 1.51253 1.69506 1.72019 1.96951 2.05340 2.10547 2.74948 3.13818 3.21703 3.34140 3.48577 3.58196 3.65545 3.73655 3.78550 3.79440 3.93884 3.99938 4.03737 4.11402 4.22742 4.41375 4.55973 4.59587 4.60913 4.61661 4.66929 4.73442 4.76056 4.81375 4.84057 4.85537 4.86967 4.95422 4.95801 5.00003 5.14632 5.26769 5.29470 5.32852 5.38553 5.44580 5.57488 5.57870 5.73804 6.24979 6.36866 6.38326 6.59946 6.69817 7.07855 7.31589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.644 3.356 7 O -0.591 6.591 8 N -0.691 5.691 9 C 0.139 3.861 10 H 0.122 0.878 11 C -0.114 4.114 12 C -0.116 4.116 13 H 0.154 0.846 14 C 0.531 3.469 15 O -0.566 6.566 16 N -0.516 5.516 17 N -0.521 5.521 18 C 0.597 3.403 19 O -0.561 6.561 20 C -0.069 4.069 21 C -0.088 4.088 22 C -0.188 4.188 23 C -0.060 4.060 24 O -0.564 6.564 25 Si 0.781 3.219 26 C 0.065 3.935 27 N -0.519 5.519 28 C -0.133 4.133 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.416 0.584 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.440 0.560 42 H 0.434 0.566 43 H 0.136 0.864 44 H 0.083 0.917 45 H 0.391 0.609 46 H -0.296 1.296 47 H -0.287 1.287 48 H 0.212 0.788 49 H 0.437 0.563 50 H 0.096 0.904 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 4.556 3.015 6.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.398 3.602 7 O -0.482 6.482 8 N -0.350 5.350 9 C 0.036 3.964 10 H 0.140 0.860 11 C -0.153 4.153 12 C -0.139 4.139 13 H 0.172 0.828 14 C 0.319 3.681 15 O -0.443 6.443 16 N -0.264 5.264 17 N -0.269 5.269 18 C 0.386 3.614 19 O -0.438 6.438 20 C -0.182 4.182 21 C -0.115 4.115 22 C -0.195 4.195 23 C -0.169 4.169 24 O -0.374 6.374 25 Si 0.685 3.315 26 C -0.074 4.074 27 N -0.117 5.117 28 C -0.172 4.172 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.284 0.716 42 H 0.277 0.723 43 H 0.154 0.846 44 H 0.100 0.900 45 H 0.241 0.759 46 H -0.223 1.223 47 H -0.214 1.214 48 H 0.229 0.771 49 H 0.278 0.722 50 H 0.115 0.885 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.460 4.260 2.502 6.032 hybrid contribution -0.401 -1.041 0.206 1.135 sum 3.059 3.218 2.709 5.201 Atomic orbital electron populations 1.22474 0.93988 1.03793 1.03457 1.22344 0.94481 0.92527 0.81534 1.21896 1.02448 0.91017 1.04209 1.22477 1.01629 1.02342 0.97292 1.86319 1.71539 1.23449 1.47279 1.18394 0.78611 0.80764 0.82418 1.90901 1.42125 1.70856 1.44268 1.44749 1.54938 1.12263 1.23048 1.22588 0.95946 0.78761 0.99150 0.86005 1.23279 0.95741 0.98417 0.97821 1.22568 1.01081 1.01587 0.88651 0.82819 1.21167 0.81129 0.75664 0.90149 1.90727 1.31073 1.52118 1.70373 1.45138 1.22508 1.62582 0.96207 1.44640 1.21368 1.62732 0.98117 1.17173 0.82002 0.77001 0.85225 1.90872 1.31133 1.53087 1.68746 1.19669 0.93094 1.16152 0.89309 1.21267 0.98799 0.99142 0.92287 1.18961 0.96893 1.09064 0.94536 1.24472 1.05556 0.82615 1.04222 1.86568 1.82803 1.20735 1.47268 0.94316 0.75845 0.89780 0.71562 1.22356 0.97054 1.00312 0.87636 1.41890 1.16013 1.46803 1.06950 1.23539 0.99903 0.95353 0.98444 0.92041 0.89513 0.91587 0.91219 0.88325 0.91260 0.91576 0.89514 0.91976 0.74728 0.88388 0.88275 0.71644 0.72343 0.84643 0.89955 0.75884 1.22298 1.21354 0.77112 0.72214 0.88533 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.49 8.37 71.98 0.60 0.12 16 2 C 0.13 0.32 1.13 -10.80 -0.01 0.31 16 3 C -0.14 0.30 8.85 71.98 0.64 0.94 16 4 C -0.18 -0.48 8.37 71.98 0.60 0.13 16 5 O -0.37 -1.85 9.94 -55.51 -0.55 -2.40 16 6 C 0.64 3.54 8.06 129.79 1.05 4.58 16 7 O -0.59 -6.00 11.48 19.83 0.23 -5.77 16 8 N -0.69 0.53 5.36 -567.17 -3.04 -2.51 16 9 C 0.14 -0.53 4.25 45.61 0.19 -0.33 16 10 H 0.12 -0.27 7.47 -2.39 -0.02 -0.29 16 11 C -0.11 0.66 7.15 31.12 0.22 0.88 16 12 C -0.12 0.78 4.15 -11.01 -0.05 0.73 16 13 H 0.15 -1.78 8.14 -2.39 -0.02 -1.80 16 14 C 0.53 -0.58 7.48 87.66 0.66 0.07 16 15 O -0.57 -2.71 15.74 -3.05 -0.05 -2.76 16 16 N -0.52 0.47 6.26 -173.53 -1.09 -0.61 16 17 N -0.52 -0.14 6.26 -176.39 -1.10 -1.25 16 18 C 0.60 2.94 7.90 86.45 0.68 3.62 16 19 O -0.56 -6.66 16.72 -4.32 -0.07 -6.74 16 20 C -0.07 -0.18 7.06 40.35 0.28 0.10 16 21 C -0.09 -0.49 10.59 22.57 0.24 -0.25 16 22 C -0.19 -0.25 5.46 -20.12 -0.11 -0.36 16 23 C -0.06 0.04 3.01 71.24 0.21 0.26 16 24 O -0.56 -1.94 12.86 -148.98 -1.92 -3.86 16 25 Si 0.78 -3.76 30.60 68.60 2.10 -1.67 16 26 C 0.06 -0.29 10.45 83.48 0.87 0.58 16 27 N -0.52 2.52 5.99 -183.63 -1.10 1.42 16 28 C -0.13 0.75 7.44 31.21 0.23 0.98 16 29 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.07 0.50 5.88 -2.39 -0.01 0.49 16 32 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 35 H 0.07 0.50 5.88 -2.39 -0.01 0.48 16 36 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.42 -1.68 8.84 -92.71 -0.82 -2.50 16 39 H 0.10 -0.36 7.41 -2.39 -0.02 -0.37 16 40 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.44 -1.11 8.00 -213.32 -1.71 -2.82 16 42 H 0.43 -1.40 7.13 -213.33 -1.52 -2.92 16 43 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 44 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 45 H 0.39 -1.79 8.74 -74.06 -0.65 -2.44 16 46 H -0.30 -0.24 7.11 99.48 0.71 0.46 16 47 H -0.29 -0.16 7.11 99.48 0.71 0.55 16 48 H 0.21 -2.48 6.21 -2.91 -0.02 -2.49 16 49 H 0.44 -5.03 8.19 -92.71 -0.76 -5.79 16 50 H 0.10 -0.63 8.14 -2.38 -0.02 -0.64 16 51 H 0.09 -0.37 8.09 -2.39 -0.02 -0.39 16 Total: 0.00 -30.39 424.42 -4.65 -35.04 By element: Atomic # 1 Polarization: -16.88 SS G_CDS: -4.38 Total: -21.26 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 6.32 Total: 12.35 kcal Atomic # 7 Polarization: 3.39 SS G_CDS: -6.33 Total: -2.95 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -2.36 Total: -21.52 kcal Atomic # 14 Polarization: -3.76 SS G_CDS: 2.10 Total: -1.67 kcal Total: -30.39 -4.65 -35.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14472184_10543058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.313 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds