Wall clock time and date at job start Sun Mar 7 2021 00:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00090 * 2 1 4 4 O 1.20830 * 120.00076 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00188 * 179.72499 * 3 2 1 6 6 H 1.09005 * 109.46872 * 300.27915 * 5 3 2 7 7 C 1.53003 * 109.46617 * 60.27672 * 5 3 2 8 8 C 1.53004 * 109.46871 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47147 * 299.99939 * 8 7 5 10 10 H 1.08996 * 109.47207 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.46836 * 300.00253 * 9 8 7 12 12 C 1.34780 * 119.99895 * 274.99549 * 11 9 8 13 13 O 1.21689 * 120.00088 * 354.41458 * 12 11 9 14 14 C 1.46676 * 120.00001 * 174.41352 * 12 11 9 15 15 C 1.37872 * 126.23485 * 4.71493 * 14 12 11 16 16 C 1.39829 * 107.08708 * 180.02562 * 15 14 12 17 17 C 1.50707 * 126.06599 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47073 * 299.99524 * 17 16 15 19 19 Si 1.86306 * 109.46770 * 179.97438 * 17 16 15 20 20 C 1.35455 * 107.86666 * 0.02562 * 16 15 14 21 21 N 1.35529 * 108.86762 * 359.73013 * 20 16 15 22 22 C 1.46501 * 125.68030 * 180.30438 * 21 20 16 23 23 C 1.53004 * 109.46862 * 60.00057 * 9 8 7 24 24 C 1.52996 * 109.47335 * 180.27742 * 5 3 2 25 25 H 1.08996 * 109.47348 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46754 * 300.00293 * 1 2 3 27 27 H 1.08997 * 109.46943 * 59.99403 * 1 2 3 28 28 H 1.08999 * 109.47398 * 299.99931 * 7 5 3 29 29 H 1.08991 * 109.47397 * 60.00523 * 7 5 3 30 30 H 1.09001 * 109.47235 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.47036 * 59.99987 * 8 7 5 32 32 H 0.97003 * 120.00485 * 95.00481 * 11 9 8 33 33 H 1.08000 * 126.45377 * 0.03409 * 15 14 12 34 34 H 1.09000 * 109.47257 * 60.00118 * 17 16 15 35 35 H 0.96702 * 113.99399 * 180.02562 * 18 17 16 36 36 H 1.48500 * 110.00013 * 298.67991 * 19 17 16 37 37 H 1.48497 * 110.00248 * 59.99977 * 19 17 16 38 38 H 1.07998 * 125.56389 * 179.97438 * 20 16 15 39 39 H 1.09003 * 109.47100 * 270.85012 * 22 21 20 40 40 H 1.09002 * 109.46733 * 30.84239 * 22 21 20 41 41 H 1.08993 * 109.47636 * 150.84282 * 22 21 20 42 42 H 1.08999 * 109.47074 * 180.02562 * 23 9 8 43 43 H 1.08997 * 109.46983 * 59.99921 * 23 9 8 44 44 H 1.08999 * 109.47054 * 299.99553 * 24 5 3 45 45 H 1.09001 * 109.47050 * 60.00087 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0063 6 1 3.9525 0.7783 0.8965 7 6 4.1184 0.5845 -1.2427 8 6 5.6463 0.6641 -1.2360 9 6 6.0807 2.1311 -1.2301 10 1 7.1691 2.1878 -1.2249 11 7 5.5620 2.7987 -2.4266 12 6 6.2481 2.7345 -3.5849 13 8 7.3459 2.2101 -3.6136 14 6 5.6717 3.2968 -4.8108 15 6 4.4874 3.9959 -4.9083 16 6 4.3243 4.3422 -6.2532 17 6 3.1700 5.1160 -6.8364 18 8 1.9522 4.4078 -6.5966 19 14 3.4211 5.3168 -8.6715 20 6 5.3878 3.8589 -6.9388 21 7 6.2167 3.2264 -6.0729 22 6 7.4811 2.5741 -6.4223 23 6 5.5286 2.8214 0.0188 24 6 4.0002 2.7420 0.0119 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.8093 -0.4607 -1.2467 29 1 3.7323 1.0810 -2.1328 30 1 6.0396 0.1727 -2.1260 31 1 6.0321 0.1673 -0.3458 32 1 4.7249 3.2870 -2.3852 33 1 3.8129 4.2318 -4.0985 34 1 3.1174 6.0986 -6.3676 35 1 1.1656 4.8486 -6.9460 36 1 4.6680 6.0798 -8.9330 37 1 3.4949 3.9844 -9.3230 38 1 5.5508 3.9640 -8.0012 39 1 7.2920 1.5341 -6.6885 40 1 7.9338 3.0894 -7.2694 41 1 8.1582 2.6133 -5.5691 42 1 5.8376 3.8666 0.0228 43 1 5.9144 2.3246 0.9090 44 1 3.6141 3.2384 -0.8784 45 1 3.6069 3.2337 0.9016 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_10803934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:49:44 Heat of formation + Delta-G solvation = -103.753146 kcal Electronic energy + Delta-G solvation = -28438.284065 eV Core-core repulsion = 24423.264646 eV Total energy + Delta-G solvation = -4015.019419 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.72421 -41.87380 -40.75432 -38.93855 -37.64279 -37.52047 -35.18130 -34.02910 -32.14624 -31.88390 -30.44223 -28.64515 -28.39349 -25.81530 -25.06691 -24.00615 -23.72524 -21.84483 -21.37458 -20.67518 -20.15192 -18.86144 -18.63828 -18.24488 -17.84140 -17.53234 -17.32591 -16.88797 -16.68882 -16.10414 -15.84782 -15.34187 -15.24648 -15.05282 -14.97142 -14.85209 -14.49424 -14.27014 -14.18458 -13.91484 -13.75506 -13.69311 -13.34289 -13.29641 -13.27480 -13.13717 -12.94058 -12.49144 -12.22858 -12.09125 -11.97722 -11.86110 -11.64243 -11.43689 -11.20374 -11.18756 -10.27813 -10.21990 -9.78748 -9.41510 -4.93230 0.24973 1.10187 1.27229 1.41112 1.48051 1.71124 1.72051 2.02412 2.17400 2.25310 3.45439 3.50378 3.56019 3.64356 3.66842 3.69973 3.91117 3.93974 4.01065 4.03101 4.13144 4.20547 4.25908 4.27871 4.29951 4.31513 4.38302 4.41181 4.53810 4.56547 4.62333 4.67356 4.68023 4.77772 4.91776 5.03644 5.03886 5.07575 5.11213 5.22653 5.26190 5.35653 5.42410 5.53606 5.74014 5.95705 6.36301 6.65549 7.00191 7.02682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.461 3.539 4 O -0.537 6.537 5 C -0.074 4.074 6 H 0.136 0.864 7 C -0.104 4.104 8 C -0.123 4.123 9 C 0.142 3.858 10 H 0.086 0.914 11 N -0.701 5.701 12 C 0.591 3.409 13 O -0.576 6.576 14 C -0.071 4.071 15 C -0.114 4.114 16 C -0.181 4.181 17 C -0.045 4.045 18 O -0.568 6.568 19 Si 0.778 3.222 20 C 0.008 3.992 21 N -0.411 5.411 22 C 0.060 3.940 23 C -0.116 4.116 24 C -0.104 4.104 25 H 0.127 0.873 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.409 0.591 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.400 0.600 36 H -0.286 1.286 37 H -0.298 1.298 38 H 0.175 0.825 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 1.175 0.253 2.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.305 3.695 4 O -0.427 6.427 5 C -0.093 4.093 6 H 0.154 0.846 7 C -0.142 4.142 8 C -0.161 4.161 9 C 0.039 3.961 10 H 0.104 0.896 11 N -0.353 5.353 12 C 0.380 3.620 13 O -0.458 6.458 14 C -0.185 4.185 15 C -0.140 4.140 16 C -0.187 4.187 17 C -0.156 4.156 18 O -0.377 6.377 19 Si 0.684 3.316 20 C -0.129 4.129 21 N -0.083 5.083 22 C -0.080 4.080 23 C -0.153 4.153 24 C -0.142 4.142 25 H 0.145 0.855 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.247 0.753 33 H 0.176 0.824 34 H 0.105 0.895 35 H 0.251 0.749 36 H -0.213 1.213 37 H -0.226 1.226 38 H 0.192 0.808 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.412 0.301 -0.190 0.544 hybrid contribution -0.437 0.066 0.200 0.485 sum -0.849 0.367 0.009 0.925 Atomic orbital electron populations 1.23504 0.75178 1.05495 1.02399 1.86508 1.24651 1.33306 1.83580 1.24380 0.93047 0.80997 0.71036 1.90672 1.68097 1.37294 1.46591 1.21231 0.85030 0.99943 1.03051 0.84642 1.21427 0.96000 1.01308 0.95418 1.21897 0.94661 0.95919 1.03628 1.21154 0.99391 0.91970 0.83610 0.89618 1.45776 1.26238 1.54455 1.08813 1.17011 0.83944 0.78133 0.82943 1.90759 1.21095 1.47559 1.86413 1.20269 0.98770 1.12975 0.86450 1.21398 0.95196 1.00029 0.97372 1.19174 0.97556 1.07845 0.94144 1.24182 0.83957 0.95672 1.11745 1.86449 1.16561 1.51426 1.83266 0.94253 0.84659 0.79146 0.73577 1.21949 0.93368 1.01520 0.96050 1.43972 1.18319 1.40142 1.05908 1.22469 0.82644 0.98603 1.04249 1.21828 0.93965 1.02390 0.97135 1.21455 0.96108 0.93075 1.03563 0.85502 0.91907 0.92258 0.90060 0.92688 0.92699 0.88020 0.75349 0.82380 0.89491 0.74924 1.21323 1.22606 0.80809 0.89905 0.87520 0.88564 0.89774 0.87487 0.91960 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.18 16 2 O -0.36 -1.14 10.48 -51.35 -0.54 -1.68 16 3 C 0.46 1.80 7.25 71.24 0.52 2.31 16 4 O -0.54 -5.29 15.73 21.95 0.35 -4.95 16 5 C -0.07 0.19 2.63 -11.54 -0.03 0.16 16 6 H 0.14 -0.95 8.14 -2.38 -0.02 -0.96 16 7 C -0.10 0.19 4.98 30.60 0.15 0.34 16 8 C -0.12 0.27 5.60 30.60 0.17 0.44 16 9 C 0.14 -0.22 2.83 44.99 0.13 -0.09 16 10 H 0.09 0.12 7.50 -2.39 -0.02 0.10 16 11 N -0.70 -1.02 4.22 -446.51 -1.88 -2.91 16 12 C 0.59 4.65 7.74 86.45 0.67 5.32 16 13 O -0.58 -7.44 14.26 -4.31 -0.06 -7.50 16 14 C -0.07 -0.59 6.89 40.35 0.28 -0.31 16 15 C -0.11 -0.74 10.29 22.57 0.23 -0.50 16 16 C -0.18 -1.17 5.47 -20.12 -0.11 -1.28 16 17 C -0.05 -0.03 3.01 71.24 0.21 0.18 16 18 O -0.57 -0.76 12.86 -148.98 -1.92 -2.67 16 19 Si 0.78 -1.55 30.59 68.60 2.10 0.55 16 20 C 0.01 0.05 9.94 83.48 0.83 0.88 16 21 N -0.41 -3.07 3.16 -534.32 -1.69 -4.76 16 22 C 0.06 0.18 10.65 127.77 1.36 1.54 16 23 C -0.12 0.70 5.61 30.61 0.17 0.87 16 24 C -0.10 0.35 4.32 30.61 0.13 0.49 16 25 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 27 H 0.06 0.03 8.13 -2.39 -0.02 0.02 16 28 H 0.08 -0.14 8.12 -2.39 -0.02 -0.16 16 29 H 0.05 0.08 7.60 -2.39 -0.02 0.06 16 30 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.10 -0.63 8.14 -2.38 -0.02 -0.64 16 32 H 0.41 -0.40 5.77 -92.71 -0.53 -0.94 16 33 H 0.16 0.41 7.45 -2.91 -0.02 0.39 16 34 H 0.09 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.40 -3.71 8.74 -74.06 -0.65 -4.36 16 36 H -0.29 -0.78 7.11 99.48 0.71 -0.08 16 37 H -0.30 -1.62 7.11 99.48 0.71 -0.91 16 38 H 0.17 0.53 6.19 -2.91 -0.02 0.51 16 39 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.10 0.58 6.19 -2.39 -0.01 0.56 16 42 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.11 -1.01 8.14 -2.39 -0.02 -1.03 16 44 H 0.06 -0.09 6.46 -2.39 -0.02 -0.10 16 45 H 0.08 -0.20 8.10 -2.39 -0.02 -0.22 16 Total: 0.00 -23.90 364.76 2.14 -21.76 By element: Atomic # 1 Polarization: -9.24 SS G_CDS: -0.13 Total: -9.37 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 5.91 Total: 11.53 kcal Atomic # 7 Polarization: -4.09 SS G_CDS: -3.57 Total: -7.67 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -2.17 Total: -16.80 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: 2.10 Total: 0.55 kcal Total: -23.90 2.14 -21.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_10803934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.994 kcal (2) G-P(sol) polarization free energy of solvation -23.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds