Wall clock time and date at job start Sun Mar 7 2021 00:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99841 * 2 1 4 4 O 1.20828 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00059 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47060 * 60.00008 * 5 3 2 7 7 C 1.53002 * 109.47419 * 180.02562 * 5 3 2 8 8 C 1.52997 * 109.47415 * 179.97438 * 7 5 3 9 9 C 1.53002 * 109.46978 * 300.00098 * 8 7 5 10 10 H 1.08996 * 109.46698 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46704 * 299.99603 * 9 8 7 12 12 C 1.34781 * 119.99733 * 204.99898 * 11 9 8 13 13 O 1.21699 * 120.00123 * 0.02562 * 12 11 9 14 14 C 1.46676 * 120.00107 * 180.02562 * 12 11 9 15 15 C 1.37868 * 126.23609 * 179.71700 * 14 12 11 16 16 C 1.50701 * 126.45755 * 359.96435 * 15 14 12 17 17 C 1.39833 * 107.08789 * 179.84771 * 15 14 12 18 18 C 1.35455 * 107.86609 * 0.41522 * 17 15 14 19 19 C 1.50696 * 125.56698 * 179.70174 * 18 17 15 20 20 O 1.42910 * 109.46996 * 120.04605 * 19 18 17 21 21 Si 1.86294 * 109.47162 * 0.04788 * 19 18 17 22 22 N 1.35539 * 108.87035 * 359.74374 * 18 17 15 23 23 C 1.53002 * 109.47128 * 59.99726 * 9 8 7 24 24 C 1.52992 * 109.47106 * 300.00123 * 23 9 8 25 25 H 1.08991 * 109.46936 * 60.00159 * 1 2 3 26 26 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47195 * 300.00371 * 1 2 3 28 28 H 1.09000 * 109.46986 * 300.00096 * 7 5 3 29 29 H 1.09002 * 109.47075 * 59.99368 * 7 5 3 30 30 H 1.09002 * 109.47045 * 59.99931 * 8 7 5 31 31 H 1.08998 * 109.47171 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00635 * 25.00636 * 11 9 8 33 33 H 1.09003 * 109.47048 * 89.99789 * 16 15 14 34 34 H 1.08997 * 109.47320 * 209.99809 * 16 15 14 35 35 H 1.09001 * 109.46858 * 330.00152 * 16 15 14 36 36 H 1.08001 * 126.06905 * 180.18373 * 17 15 14 37 37 H 1.08999 * 109.47441 * 240.04163 * 19 18 17 38 38 H 0.96700 * 113.99724 * 299.99832 * 20 19 18 39 39 H 1.48502 * 110.00408 * 58.67871 * 21 19 18 40 40 H 1.48502 * 110.00328 * 179.97438 * 21 19 18 41 41 H 0.96998 * 125.67893 * 180.02562 * 22 18 17 42 42 H 1.09002 * 109.47070 * 60.00059 * 23 9 8 43 43 H 1.08996 * 109.46550 * 179.97438 * 23 9 8 44 44 H 1.09002 * 109.47103 * 299.99915 * 24 23 9 45 45 H 1.08998 * 109.46862 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.0002 2.7421 0.0011 8 6 5.5280 2.8222 0.0023 9 6 6.0741 2.1285 1.2520 10 1 7.1626 2.1852 1.2526 11 7 5.5493 2.7926 2.4477 12 6 6.2296 2.7252 3.6092 13 8 7.2801 2.1132 3.6646 14 6 5.7040 3.3896 4.8066 15 6 6.2875 3.3992 6.0557 16 6 7.5805 2.7303 6.4453 17 6 5.4548 4.1487 6.8924 18 6 4.3958 4.5668 6.1585 19 6 3.2493 5.4004 6.6699 20 8 3.1855 6.6245 5.9351 21 14 3.5101 5.7735 8.4764 22 7 4.5352 4.1121 4.8893 23 6 5.6403 0.6613 1.2514 24 6 4.1124 0.5812 1.2502 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.6108 3.2364 -0.8889 29 1 3.6100 3.2360 0.8910 30 1 5.9185 2.3282 -0.8874 31 1 5.8371 3.8675 0.0023 32 1 4.7122 3.2806 2.4036 33 1 8.4084 3.4225 6.2915 34 1 7.5384 2.4419 7.4955 35 1 7.7301 1.8428 5.8304 36 1 5.6238 4.3544 7.9391 37 1 2.3161 4.8516 6.5432 38 1 3.9840 7.1656 6.0023 39 1 4.7948 6.4939 8.6660 40 1 2.3864 6.5958 8.9927 41 1 3.9149 4.2700 4.1605 42 1 6.0307 0.1673 0.3617 43 1 6.0297 0.1671 2.1414 44 1 3.7220 1.0753 2.1399 45 1 3.8034 -0.4640 1.2503 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_13940406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:52:40 Heat of formation + Delta-G solvation = -118.532949 kcal Electronic energy + Delta-G solvation = -28389.798163 eV Core-core repulsion = 24374.137844 eV Total energy + Delta-G solvation = -4015.660319 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.64749 -41.90226 -40.74153 -38.96301 -37.87047 -37.56964 -35.11472 -33.51892 -32.21072 -31.92615 -30.98034 -28.67390 -28.18211 -26.87863 -24.90818 -23.78388 -23.08008 -21.85071 -21.56214 -20.60862 -20.24161 -19.58925 -18.68863 -18.24958 -17.86536 -17.56022 -16.87360 -16.72563 -16.45849 -16.32262 -15.74188 -15.39991 -15.26079 -15.04848 -14.90750 -14.54574 -14.37818 -14.28513 -13.93878 -13.89744 -13.70486 -13.63398 -13.56490 -13.31673 -13.17737 -12.99799 -12.95706 -12.28900 -12.25646 -12.11512 -11.89733 -11.88025 -11.67930 -11.46684 -11.22342 -11.13494 -10.83491 -10.21877 -9.84212 -9.20720 -4.85632 0.30240 1.05673 1.20393 1.53183 1.67827 1.68345 1.88225 2.04525 2.20466 2.26638 3.31357 3.42226 3.53070 3.55442 3.63231 3.78266 3.93328 3.99961 4.10485 4.13867 4.21620 4.23093 4.24751 4.30134 4.35916 4.37324 4.46797 4.58068 4.65167 4.71569 4.74477 4.81272 4.90586 4.93796 5.00790 5.04876 5.08485 5.16188 5.19149 5.24203 5.31153 5.34977 5.46092 5.62573 5.85391 6.27019 6.37112 6.44817 6.61331 7.07690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.539 6.539 5 C -0.075 4.075 6 H 0.135 0.865 7 C -0.103 4.103 8 C -0.117 4.117 9 C 0.143 3.857 10 H 0.084 0.916 11 N -0.715 5.715 12 C 0.588 3.412 13 O -0.557 6.557 14 C -0.071 4.071 15 C -0.085 4.085 16 C -0.089 4.089 17 C -0.206 4.206 18 C 0.033 3.967 19 C -0.066 4.066 20 O -0.549 6.549 21 Si 0.797 3.203 22 N -0.517 5.517 23 C -0.123 4.123 24 C -0.102 4.102 25 H 0.061 0.939 26 H 0.127 0.873 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.401 0.599 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.167 0.833 37 H 0.132 0.868 38 H 0.389 0.611 39 H -0.281 1.281 40 H -0.298 1.298 41 H 0.424 0.576 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 -2.153 -0.506 2.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.428 6.428 5 C -0.094 4.094 6 H 0.152 0.848 7 C -0.140 4.140 8 C -0.155 4.155 9 C 0.039 3.961 10 H 0.102 0.898 11 N -0.367 5.367 12 C 0.377 3.623 13 O -0.436 6.436 14 C -0.184 4.184 15 C -0.094 4.094 16 C -0.146 4.146 17 C -0.230 4.230 18 C -0.085 4.085 19 C -0.174 4.174 20 O -0.357 6.357 21 Si 0.700 3.300 22 N -0.114 5.114 23 C -0.162 4.162 24 C -0.139 4.139 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.237 0.763 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.185 0.815 37 H 0.149 0.851 38 H 0.239 0.761 39 H -0.207 1.207 40 H -0.225 1.225 41 H 0.263 0.737 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.679 -1.925 -0.234 2.565 hybrid contribution -0.691 1.267 -1.201 1.878 sum -2.369 -0.658 -1.435 2.847 Atomic orbital electron populations 1.23508 0.75147 1.05550 1.02367 1.86515 1.24651 1.33232 1.83514 1.24378 0.93025 0.80999 0.70991 1.90671 1.68123 1.37333 1.46721 1.21239 0.85057 0.99826 1.03245 0.84770 1.21427 0.96098 0.93148 1.03365 1.21820 0.93998 1.02238 0.97407 1.21100 0.99223 0.92093 0.83706 0.89776 1.45995 1.26088 1.55164 1.09467 1.17158 0.83626 0.79320 0.82200 1.90814 1.23769 1.44298 1.84671 1.20266 0.92697 1.08962 0.96503 1.20174 0.97984 0.99900 0.91320 1.20334 0.92287 0.99885 1.02119 1.20830 0.95531 1.05687 1.00945 1.21219 0.99680 1.02718 0.84921 1.25126 0.98463 0.84771 1.09075 1.86581 1.44548 1.32433 1.72159 0.93295 0.76556 0.87100 0.73083 1.41851 1.18625 1.39988 1.10940 1.21885 0.94615 0.95929 1.03748 1.21415 0.96029 1.01324 0.95164 0.92038 0.85443 0.92174 0.90453 0.92067 0.87689 0.90024 0.76317 0.91679 0.89987 0.91843 0.81528 0.85064 0.76104 1.20680 1.22541 0.73716 0.88328 0.92295 0.92580 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.62 10.47 -51.36 -0.54 -1.16 16 3 C 0.46 1.11 7.25 71.24 0.52 1.63 16 4 O -0.54 -4.52 15.73 21.96 0.35 -4.17 16 5 C -0.07 0.30 2.63 -11.54 -0.03 0.27 16 6 H 0.13 -1.04 8.14 -2.39 -0.02 -1.06 16 7 C -0.10 0.47 4.32 30.59 0.13 0.61 16 8 C -0.12 0.80 5.61 30.59 0.17 0.97 16 9 C 0.14 -0.39 2.78 44.99 0.13 -0.27 16 10 H 0.08 0.05 7.58 -2.39 -0.02 0.03 16 11 N -0.72 0.68 4.23 -446.50 -1.89 -1.21 16 12 C 0.59 3.28 7.75 86.45 0.67 3.95 16 13 O -0.56 -6.73 14.47 -4.34 -0.06 -6.79 16 14 C -0.07 -0.30 7.06 40.35 0.28 -0.02 16 15 C -0.08 -0.41 6.21 -19.57 -0.12 -0.54 16 16 C -0.09 -0.40 9.83 71.24 0.70 0.30 16 17 C -0.21 -0.15 9.27 22.01 0.20 0.06 16 18 C 0.03 -0.03 6.47 41.34 0.27 0.24 16 19 C -0.07 0.21 3.08 71.23 0.22 0.43 16 20 O -0.55 0.24 12.88 -148.98 -1.92 -1.68 16 21 Si 0.80 -3.24 30.54 68.60 2.10 -1.14 16 22 N -0.52 0.26 5.99 -171.93 -1.03 -0.77 16 23 C -0.12 0.42 5.60 30.59 0.17 0.59 16 24 C -0.10 0.37 4.98 30.59 0.15 0.52 16 25 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 26 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 27 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 28 H 0.08 -0.25 8.10 -2.39 -0.02 -0.27 16 29 H 0.06 -0.21 6.46 -2.39 -0.02 -0.23 16 30 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.40 -1.71 5.99 -92.71 -0.56 -2.26 16 33 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.06 0.53 6.49 -2.39 -0.02 0.51 16 36 H 0.17 -0.60 6.17 -2.91 -0.02 -0.62 16 37 H 0.13 -0.71 7.96 -2.39 -0.02 -0.72 16 38 H 0.39 -2.01 8.70 -74.06 -0.64 -2.66 16 39 H -0.28 -0.11 7.11 99.48 0.71 0.60 16 40 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 41 H 0.42 -1.86 8.19 -92.71 -0.76 -2.62 16 42 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 43 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.06 -0.08 7.60 -2.39 -0.02 -0.10 16 45 H 0.08 -0.28 8.11 -2.39 -0.02 -0.30 16 Total: 0.00 -20.76 364.68 0.78 -19.98 By element: Atomic # 1 Polarization: -12.07 SS G_CDS: -0.88 Total: -12.96 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 4.66 Total: 9.88 kcal Atomic # 7 Polarization: 0.94 SS G_CDS: -2.92 Total: -1.97 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -2.17 Total: -13.80 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.10 Total: -1.14 kcal Total: -20.76 0.78 -19.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_13940406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.551 kcal (2) G-P(sol) polarization free energy of solvation -20.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds