Wall clock time and date at job start Sun Mar 7 2021 00:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 7 7 C 1.53006 * 109.47194 * 59.71653 * 5 3 2 8 8 C 1.53003 * 109.47147 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47020 * 300.00408 * 8 7 5 10 10 H 1.08994 * 109.46807 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.46852 * 299.99854 * 9 8 7 12 12 C 1.34778 * 120.00042 * 275.00157 * 11 9 8 13 13 O 1.21277 * 119.99708 * 0.02562 * 12 11 9 14 14 C 1.50693 * 120.00017 * 180.02562 * 12 11 9 15 15 C 1.53540 * 109.82581 * 79.99812 * 14 12 11 16 16 C 1.53040 * 108.56390 * 180.48904 * 15 14 12 17 17 C 1.50202 * 110.31546 * 310.42679 * 16 15 14 18 18 C 1.50695 * 118.54439 * 200.02865 * 17 16 15 19 19 O 1.42905 * 109.47322 * 300.00441 * 18 17 16 20 20 Si 1.86305 * 109.47151 * 180.02562 * 18 17 16 21 21 C 1.31119 * 122.90906 * 20.05821 * 17 16 15 22 22 N 1.38918 * 121.84388 * 359.58590 * 21 17 16 23 23 C 1.53000 * 109.47308 * 60.00062 * 9 8 7 24 24 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 25 25 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 26 26 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 27 27 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47378 * 300.00588 * 7 5 3 29 29 H 1.09004 * 109.46828 * 60.00529 * 7 5 3 30 30 H 1.08994 * 109.46775 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46872 * 59.99973 * 8 7 5 32 32 H 0.96999 * 119.99802 * 95.00811 * 11 9 8 33 33 H 1.09001 * 109.81705 * 319.13543 * 14 12 11 34 34 H 1.08999 * 109.62148 * 300.21695 * 15 14 12 35 35 H 1.08998 * 109.61847 * 60.76591 * 15 14 12 36 36 H 1.08998 * 109.32718 * 70.68865 * 16 15 14 37 37 H 1.09003 * 109.32598 * 190.17145 * 16 15 14 38 38 H 1.09005 * 109.47336 * 60.00212 * 18 17 16 39 39 H 0.96705 * 113.99662 * 180.02562 * 19 18 17 40 40 H 1.48496 * 109.99702 * 60.00099 * 20 18 17 41 41 H 1.48498 * 110.00080 * 181.31894 * 20 18 17 42 42 H 1.07994 * 119.07438 * 179.61647 * 21 17 16 43 43 H 0.96999 * 120.55820 * 193.33719 * 22 21 17 44 44 H 1.09001 * 109.46739 * 180.02562 * 23 9 8 45 45 H 1.08996 * 109.46830 * 59.99776 * 23 9 8 46 46 H 1.09004 * 109.47066 * 299.99799 * 24 5 3 47 47 H 1.08994 * 109.47405 * 59.99969 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9595 0.7833 0.8836 7 6 4.1084 0.5780 -1.2558 8 6 5.6364 0.6576 -1.2617 9 6 6.0705 2.1248 -1.2671 10 1 7.1590 2.1814 -1.2718 11 7 5.5424 2.7859 -2.4631 12 6 6.2192 2.7155 -3.6264 13 8 7.2652 2.1045 -3.6833 14 6 5.6762 3.3961 -4.8564 15 6 6.0012 4.8959 -4.8080 16 6 5.4273 5.5595 -6.0620 17 6 5.8335 4.7945 -7.2892 18 6 5.7793 5.4926 -8.6236 19 8 4.4400 5.9166 -8.8854 20 14 6.3313 4.3192 -9.9612 21 6 6.2325 3.5462 -7.2508 22 7 6.3160 2.8396 -6.0576 23 6 5.5284 2.8217 -0.0176 24 6 4.0000 2.7422 -0.0119 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.7994 -0.4673 -1.2517 29 1 3.7151 1.0697 -2.1455 30 1 6.0225 0.1615 -2.1521 31 1 6.0293 0.1657 -0.3719 32 1 4.7056 3.2744 -2.4175 33 1 4.5970 3.2534 -4.9116 34 1 5.5507 5.3396 -3.9202 35 1 7.0819 5.0355 -4.7820 36 1 4.3396 5.5804 -5.9934 37 1 5.8015 6.5808 -6.1331 38 1 6.4384 6.3607 -8.6066 39 1 4.3304 6.3743 -9.7302 40 1 5.4403 3.1317 -9.9945 41 1 6.3129 5.0052 -11.2781 42 1 6.5044 3.0536 -8.1726 43 1 6.7886 1.9935 -6.0175 44 1 5.8374 3.8670 -0.0217 45 1 5.9214 2.3297 0.8721 46 1 3.6067 3.2339 -0.9017 47 1 3.6139 3.2387 0.8782 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14474850_15413834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:52:48 Heat of formation + Delta-G solvation = -137.029524 kcal Electronic energy + Delta-G solvation = -28722.789202 eV Core-core repulsion = 24679.015333 eV Total energy + Delta-G solvation = -4043.773869 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.99788 -41.33350 -39.96845 -38.81435 -37.50820 -37.35310 -35.01099 -33.28439 -33.15576 -32.06975 -31.36174 -28.72378 -27.45683 -25.36148 -24.89961 -23.91651 -23.65841 -22.21576 -21.72149 -20.32974 -19.24862 -19.01564 -18.61641 -18.32856 -17.85102 -17.58634 -17.47618 -16.94204 -16.50358 -16.08809 -15.68062 -15.43068 -15.35138 -15.01132 -14.99693 -14.64732 -14.37424 -14.27671 -14.11952 -13.92944 -13.74021 -13.71271 -13.58106 -13.44227 -13.28775 -13.01766 -12.87685 -12.40349 -12.35881 -12.13791 -11.84598 -11.74066 -11.70866 -11.65980 -11.53330 -11.24681 -11.20735 -10.78565 -10.23831 -10.16608 -8.40256 -4.88999 1.15415 1.31889 1.45556 1.54696 1.64873 1.66098 1.88354 2.03579 2.63906 3.34882 3.41512 3.49906 3.53082 3.59749 3.73933 3.83155 3.88721 3.93345 4.02338 4.03755 4.13253 4.16052 4.20560 4.23407 4.24156 4.24961 4.41531 4.46077 4.55427 4.59642 4.61788 4.65649 4.77308 4.83441 4.88032 4.89155 4.98144 5.01068 5.08037 5.11363 5.24641 5.32534 5.36042 5.40781 5.59065 6.24913 6.41237 6.61688 6.69895 6.87020 7.09228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.463 3.537 4 O -0.505 6.505 5 C -0.080 4.080 6 H 0.113 0.887 7 C -0.110 4.110 8 C -0.129 4.129 9 C 0.143 3.857 10 H 0.095 0.905 11 N -0.721 5.721 12 C 0.515 3.485 13 O -0.529 6.529 14 C 0.135 3.865 15 C -0.126 4.126 16 C -0.051 4.051 17 C -0.233 4.233 18 C -0.050 4.050 19 O -0.540 6.540 20 Si 0.663 3.337 21 C 0.142 3.858 22 N -0.730 5.730 23 C -0.127 4.127 24 C -0.107 4.107 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.401 0.599 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.373 0.627 40 H -0.259 1.259 41 H -0.265 1.265 42 H 0.133 0.867 43 H 0.410 0.590 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 -0.731 2.190 2.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.305 3.695 4 O -0.393 6.393 5 C -0.099 4.099 6 H 0.131 0.869 7 C -0.147 4.147 8 C -0.168 4.168 9 C 0.039 3.961 10 H 0.113 0.887 11 N -0.374 5.374 12 C 0.300 3.700 13 O -0.405 6.405 14 C 0.025 3.975 15 C -0.165 4.165 16 C -0.089 4.089 17 C -0.243 4.243 18 C -0.161 4.161 19 O -0.347 6.347 20 Si 0.565 3.435 21 C 0.022 3.978 22 N -0.364 5.364 23 C -0.165 4.165 24 C -0.144 4.144 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.237 0.763 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.220 0.780 40 H -0.184 1.184 41 H -0.190 1.190 42 H 0.150 0.850 43 H 0.247 0.753 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.005 -1.526 2.095 2.780 hybrid contribution -1.491 0.773 -0.388 1.724 sum -0.487 -0.753 1.707 1.928 Atomic orbital electron populations 1.23317 0.75945 1.04001 1.02697 1.86508 1.23711 1.33366 1.83848 1.23834 0.92069 0.81421 0.72154 1.90692 1.67218 1.36364 1.44983 1.21162 0.86935 0.99442 1.02398 0.86921 1.21509 0.96140 1.01348 0.95742 1.21938 0.94826 0.96286 1.03707 1.21031 0.99717 0.91715 0.83683 0.88695 1.46107 1.26520 1.55245 1.09527 1.20580 0.84512 0.80253 0.84683 1.90729 1.22629 1.42316 1.84789 1.21000 0.97635 0.94520 0.84301 1.21885 1.02832 0.92383 0.99414 1.19918 1.00363 0.98394 0.90176 1.19933 1.15534 0.94169 0.94667 1.24552 0.86377 1.03726 1.01402 1.86604 1.27777 1.78219 1.42088 0.95549 0.90465 0.79865 0.77603 1.20232 0.97685 0.91367 0.88506 1.44211 1.61280 1.25290 1.05581 1.21874 0.94946 1.02042 0.97618 1.21473 0.95529 0.93430 1.03985 0.91744 0.91779 0.87861 0.90168 0.91399 0.90512 0.90170 0.76273 0.89368 0.90329 0.90321 0.91391 0.90820 0.91565 0.77956 1.18366 1.19014 0.85000 0.75333 0.90188 0.89582 0.91084 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.32 10.46 -39.26 -0.41 -0.73 16 3 C 0.46 0.49 7.26 36.00 0.26 0.75 16 4 O -0.51 -1.95 15.73 -18.76 -0.30 -2.24 16 5 C -0.08 0.16 2.63 -91.77 -0.24 -0.09 16 6 H 0.11 -0.37 8.14 -51.93 -0.42 -0.79 16 7 C -0.11 0.23 4.97 -26.73 -0.13 0.10 16 8 C -0.13 0.28 5.60 -26.73 -0.15 0.13 16 9 C 0.14 -0.31 2.78 -67.93 -0.19 -0.50 16 10 H 0.10 -0.06 7.58 -51.93 -0.39 -0.46 16 11 N -0.72 1.45 4.23 -53.81 -0.23 1.22 16 12 C 0.51 0.17 7.06 -10.99 -0.08 0.10 16 13 O -0.53 -1.96 15.72 5.56 0.09 -1.87 16 14 C 0.13 -0.04 3.36 -68.52 -0.23 -0.27 16 15 C -0.13 0.08 5.47 -26.43 -0.14 -0.07 16 16 C -0.05 -0.03 5.75 -28.10 -0.16 -0.19 16 17 C -0.23 -0.31 5.48 -101.34 -0.56 -0.87 16 18 C -0.05 -0.04 2.82 36.00 0.10 0.07 16 19 O -0.54 -1.07 12.76 -35.23 -0.45 -1.52 16 20 Si 0.66 -0.04 29.68 -169.99 -5.04 -5.09 16 21 C 0.14 0.11 9.63 -16.09 -0.15 -0.04 16 22 N -0.73 -0.45 5.47 -55.35 -0.30 -0.76 16 23 C -0.13 0.46 5.61 -26.71 -0.15 0.31 16 24 C -0.11 0.27 4.32 -26.71 -0.12 0.15 16 25 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 26 H 0.06 -0.04 8.13 -51.93 -0.42 -0.47 16 27 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 28 H 0.08 -0.15 8.11 -51.93 -0.42 -0.57 16 29 H 0.07 -0.10 7.61 -51.93 -0.39 -0.50 16 30 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.08 -0.25 8.14 -51.93 -0.42 -0.68 16 32 H 0.40 -1.38 6.87 -40.82 -0.28 -1.67 16 33 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 34 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 36 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 37 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 39 H 0.37 -0.63 8.74 45.56 0.40 -0.23 16 40 H -0.26 -0.78 7.11 56.52 0.40 -0.38 16 41 H -0.26 -0.58 7.11 56.52 0.40 -0.18 16 42 H 0.13 -0.09 4.37 -52.49 -0.23 -0.32 16 43 H 0.41 0.19 8.08 -40.82 -0.33 -0.14 16 44 H 0.08 -0.29 8.14 -51.93 -0.42 -0.72 16 45 H 0.09 -0.37 8.14 -51.93 -0.42 -0.80 16 46 H 0.07 -0.15 6.46 -51.93 -0.34 -0.49 16 47 H 0.08 -0.14 8.10 -51.93 -0.42 -0.56 16 LS Contribution 371.27 15.07 5.59 5.59 Total: 0.00 -8.60 371.27 -9.43 -18.03 By element: Atomic # 1 Polarization: -5.75 SS G_CDS: -7.51 Total: -13.26 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -0.87 Total: 0.62 kcal Atomic # 7 Polarization: 0.99 SS G_CDS: -0.53 Total: 0.46 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -1.07 Total: -6.37 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: -5.04 Total: -5.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -8.60 -9.43 -18.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_15413834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.999 kcal (2) G-P(sol) polarization free energy of solvation -8.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds