Wall clock time and date at job start Sun Mar 7 2021 00:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00171 * 2 1 4 4 O 1.20825 * 119.99906 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00082 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47476 * 60.00440 * 5 3 2 7 7 C 1.53008 * 109.47154 * 180.02562 * 5 3 2 8 8 C 1.52996 * 109.47409 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.46972 * 300.00085 * 8 7 5 10 10 H 1.09002 * 109.47070 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.46799 * 300.00013 * 9 8 7 12 12 C 1.34781 * 119.99874 * 205.00309 * 11 9 8 13 13 O 1.21611 * 120.00011 * 359.97438 * 12 11 9 14 14 C 1.47373 * 119.99952 * 179.97438 * 12 11 9 15 15 C 1.36417 * 127.19237 * 179.97438 * 14 12 11 16 16 C 1.50700 * 125.80367 * 359.96268 * 15 14 12 17 17 O 1.42904 * 109.47043 * 89.99569 * 16 15 14 18 18 C 1.35900 * 116.99989 * 180.02562 * 17 16 15 19 19 C 1.38742 * 120.05640 * 359.72826 * 18 17 16 20 20 C 1.38146 * 119.94438 * 179.69932 * 19 18 17 21 21 C 1.38269 * 120.05335 * 0.59858 * 20 19 18 22 22 C 1.50697 * 119.94416 * 179.69991 * 21 20 19 23 23 O 1.42894 * 109.47220 * 244.97869 * 22 21 20 24 24 Si 1.86306 * 109.46906 * 4.97832 * 22 21 20 25 25 C 1.38270 * 120.11067 * 359.68034 * 21 20 19 26 26 C 1.38139 * 120.05700 * 0.02562 * 25 21 20 27 27 O 1.33655 * 108.40023 * 179.97438 * 15 14 12 28 28 C 1.34214 * 110.90411 * 0.02562 * 27 15 14 29 29 C 1.34175 * 109.12706 * 359.74367 * 28 27 15 30 30 C 1.53000 * 109.47233 * 59.99538 * 9 8 7 31 31 C 1.52993 * 109.47429 * 300.00188 * 5 3 2 32 32 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47130 * 299.99581 * 1 2 3 34 34 H 1.09002 * 109.47074 * 59.99461 * 1 2 3 35 35 H 1.09004 * 109.46943 * 59.99657 * 7 5 3 36 36 H 1.09001 * 109.46630 * 299.99966 * 7 5 3 37 37 H 1.08996 * 109.47452 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47054 * 59.99785 * 8 7 5 39 39 H 0.97002 * 120.00410 * 24.99527 * 11 9 8 40 40 H 1.08998 * 109.47553 * 210.00409 * 16 15 14 41 41 H 1.09006 * 109.46565 * 330.00363 * 16 15 14 42 42 H 1.08003 * 120.02303 * 0.02562 * 19 18 17 43 43 H 1.07988 * 119.97228 * 180.27571 * 20 19 18 44 44 H 1.08995 * 109.47071 * 124.97662 * 22 21 20 45 45 H 0.96700 * 114.00484 * 180.02562 * 23 22 21 46 46 H 1.48498 * 109.99727 * 178.68098 * 24 22 21 47 47 H 1.48501 * 110.00105 * 299.99852 * 24 22 21 48 48 H 1.08001 * 119.96731 * 180.02562 * 25 21 20 49 49 H 1.08004 * 120.02917 * 180.02562 * 26 25 21 50 50 H 1.08003 * 125.43537 * 180.02562 * 28 27 15 51 51 H 1.07997 * 127.02335 * 180.26595 * 29 28 27 52 52 H 1.09004 * 109.46724 * 60.00652 * 30 9 8 53 53 H 1.09001 * 109.47194 * 179.97438 * 30 9 8 54 54 H 1.09000 * 109.47250 * 300.00090 * 31 5 3 55 55 H 1.09004 * 109.46862 * 60.00067 * 31 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8909 7 6 4.0002 2.7421 0.0002 8 6 5.5280 2.8222 -0.0011 9 6 6.0761 2.1276 1.2472 10 1 7.1647 2.1843 1.2461 11 7 5.5533 2.7908 2.4443 12 6 6.2355 2.7228 3.6047 13 8 7.2849 2.1105 3.6581 14 6 5.7098 3.3904 4.8087 15 6 6.2744 3.4161 6.0503 16 6 7.5700 2.7543 6.4435 17 8 8.6516 3.6656 6.2389 18 6 9.8988 3.2219 6.5465 19 6 10.0773 1.9378 7.0404 20 6 11.3468 1.4870 7.3464 21 6 12.4376 2.3186 7.1724 22 6 13.8206 1.8266 7.5134 23 8 14.3414 2.5880 8.6047 24 14 13.7391 0.0284 7.9936 25 6 12.2617 3.6009 6.6858 26 6 10.9949 4.0543 6.3726 27 8 5.4831 4.1276 6.8590 28 6 4.4055 4.5793 6.1986 29 6 4.4700 4.1725 4.9217 30 6 5.6423 0.6604 1.2465 31 6 4.1139 0.5810 1.2482 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 3.6107 3.2356 0.8907 36 1 3.6100 3.2367 -0.8893 37 1 5.8371 3.8674 -0.0010 38 1 5.9170 2.3288 -0.8917 39 1 4.7161 3.2790 2.4018 40 1 7.5284 2.4698 7.4949 41 1 7.7238 1.8649 5.8322 42 1 9.2251 1.2893 7.1805 43 1 11.4867 0.4860 7.7266 44 1 14.4712 1.9421 6.6466 45 1 15.2310 2.3255 8.8784 46 1 15.1010 -0.4773 8.3015 47 1 12.8549 -0.1425 9.1744 48 1 13.1154 4.2484 6.5504 49 1 10.8581 5.0558 5.9921 50 1 3.6151 5.1787 6.6258 51 1 3.7562 4.3765 4.1374 52 1 6.0313 0.1670 0.3558 53 1 6.0331 0.1655 2.1355 54 1 3.7245 1.0749 2.1385 55 1 3.8048 -0.4643 1.2480 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_4549634.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:53:35 Heat of formation + Delta-G solvation = -140.483403 kcal Electronic energy + Delta-G solvation = -40018.825766 eV Core-core repulsion = 34761.832950 eV Total energy + Delta-G solvation = -5256.992816 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.181 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.73248 -41.90179 -41.28492 -40.88236 -39.21448 -38.92284 -37.52723 -37.37685 -34.99974 -34.07124 -32.91000 -32.00348 -31.88348 -31.49607 -31.33022 -28.64760 -27.87262 -26.16309 -25.29000 -24.39633 -23.81579 -23.70851 -22.56082 -22.19238 -21.69793 -21.06243 -20.15736 -19.49997 -19.24505 -18.63077 -18.53839 -17.83895 -17.67843 -17.51852 -17.29012 -16.97994 -16.84475 -16.76102 -16.56716 -16.28551 -15.92463 -15.69270 -15.47531 -15.29864 -15.02107 -14.85310 -14.72618 -14.49301 -14.33192 -14.23863 -14.02585 -13.91859 -13.86228 -13.83537 -13.66320 -13.51957 -13.27472 -13.18608 -13.00969 -12.92617 -12.50126 -12.22984 -12.19429 -12.05915 -11.89397 -11.84980 -11.73626 -11.61613 -11.40303 -11.16843 -11.09834 -10.96668 -10.46784 -10.11994 -10.05574 -9.83569 -9.24316 -4.92006 -0.03124 0.25581 0.29310 1.01416 1.11183 1.31093 1.51492 1.59414 1.73044 1.93921 2.08392 2.17811 2.47672 2.59956 3.32564 3.43493 3.48081 3.57176 3.64293 3.68735 3.69879 3.73305 3.81460 3.91739 3.96186 3.98810 4.06187 4.11148 4.16233 4.27039 4.27721 4.28712 4.34749 4.39918 4.41890 4.43488 4.44215 4.45354 4.57550 4.66813 4.67165 4.69208 4.78788 4.81228 4.94477 4.99467 5.07220 5.10981 5.14035 5.14733 5.23402 5.24137 5.26757 5.30096 5.37696 5.47835 5.52541 5.67144 5.87350 6.25045 6.45890 6.61383 6.66638 7.13820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.538 6.538 5 C -0.075 4.075 6 H 0.133 0.867 7 C -0.103 4.103 8 C -0.117 4.117 9 C 0.142 3.858 10 H 0.081 0.919 11 N -0.703 5.703 12 C 0.585 3.415 13 O -0.565 6.565 14 C -0.222 4.222 15 C 0.040 3.960 16 C 0.135 3.865 17 O -0.321 6.321 18 C 0.125 3.875 19 C -0.205 4.205 20 C -0.079 4.079 21 C -0.123 4.123 22 C -0.080 4.080 23 O -0.559 6.559 24 Si 0.759 3.241 25 C -0.058 4.058 26 C -0.162 4.162 27 O -0.178 6.178 28 C -0.012 4.012 29 C -0.200 4.200 30 C -0.123 4.123 31 C -0.102 4.102 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.408 0.592 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.095 0.905 45 H 0.394 0.606 46 H -0.284 1.284 47 H -0.298 1.298 48 H 0.142 0.858 49 H 0.136 0.864 50 H 0.250 0.750 51 H 0.185 0.815 52 H 0.097 0.903 53 H 0.059 0.941 54 H 0.058 0.942 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 -3.034 -4.068 5.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.307 3.693 4 O -0.427 6.427 5 C -0.094 4.094 6 H 0.151 0.849 7 C -0.141 4.141 8 C -0.154 4.154 9 C 0.038 3.962 10 H 0.100 0.900 11 N -0.356 5.356 12 C 0.373 3.627 13 O -0.446 6.446 14 C -0.227 4.227 15 C -0.013 4.013 16 C 0.061 3.939 17 O -0.236 6.236 18 C 0.080 3.920 19 C -0.223 4.223 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.189 4.189 23 O -0.369 6.369 24 Si 0.665 3.335 25 C -0.076 4.076 26 C -0.180 4.180 27 O -0.074 6.074 28 C -0.077 4.077 29 C -0.219 4.219 30 C -0.161 4.161 31 C -0.140 4.140 32 H 0.145 0.855 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.245 0.755 40 H 0.115 0.885 41 H 0.130 0.870 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.113 0.887 45 H 0.244 0.756 46 H -0.211 1.211 47 H -0.225 1.225 48 H 0.160 0.840 49 H 0.153 0.847 50 H 0.266 0.734 51 H 0.202 0.798 52 H 0.116 0.884 53 H 0.077 0.923 54 H 0.077 0.923 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.708 -3.243 -3.284 5.351 hybrid contribution -0.196 1.011 0.694 1.242 sum -2.904 -2.232 -2.590 4.486 Atomic orbital electron populations 1.23503 0.75192 1.05507 1.02381 1.86513 1.24623 1.33316 1.83560 1.24373 0.93014 0.80972 0.70990 1.90668 1.68105 1.37302 1.46672 1.21236 0.85031 0.99897 1.03198 0.84907 1.21433 0.95971 0.93113 1.03543 1.21812 0.94128 1.02215 0.97292 1.21107 0.99131 0.92195 0.83797 0.90041 1.45876 1.26167 1.54608 1.08915 1.17344 0.83266 0.79141 0.82944 1.90770 1.23918 1.44579 1.85299 1.21441 0.99732 1.07484 0.94011 1.22073 0.93470 0.96845 0.88898 1.21152 0.78594 0.90903 1.03229 1.86048 1.13384 1.42029 1.82105 1.19158 0.84021 0.93535 0.95318 1.21384 0.99329 0.95550 1.06055 1.20994 0.91458 0.99743 0.97473 1.19421 0.94252 0.95489 1.03171 1.24932 0.94033 1.07331 0.92591 1.86551 1.37656 1.60546 1.52144 0.94157 0.78655 0.75351 0.85353 1.20970 0.96332 0.95099 0.95223 1.20627 0.90621 1.00838 1.05964 1.83794 1.29810 1.53398 1.40392 1.24858 0.90209 1.00781 0.91896 1.23202 0.97844 1.01928 0.98938 1.21890 0.94683 0.95840 1.03704 1.21433 0.95942 1.01293 0.95331 0.85513 0.92131 0.92051 0.91684 0.90487 0.90035 0.87831 0.75461 0.88521 0.87010 0.83368 0.83739 0.88703 0.75551 1.21069 1.22538 0.84025 0.84655 0.73401 0.79801 0.88421 0.92254 0.92281 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.48 10.47 -51.40 -0.54 -1.02 16 3 C 0.46 0.91 7.26 71.23 0.52 1.42 16 4 O -0.54 -4.21 15.73 21.97 0.35 -3.87 16 5 C -0.07 0.32 2.63 -11.54 -0.03 0.29 16 6 H 0.13 -1.07 8.14 -2.39 -0.02 -1.09 16 7 C -0.10 0.51 4.32 30.60 0.13 0.64 16 8 C -0.12 0.80 5.61 30.59 0.17 0.97 16 9 C 0.14 -0.38 2.78 44.99 0.13 -0.26 16 10 H 0.08 0.08 7.58 -2.39 -0.02 0.06 16 11 N -0.70 0.50 4.23 -445.84 -1.88 -1.38 16 12 C 0.59 3.37 7.78 86.65 0.67 4.04 16 13 O -0.56 -6.61 14.51 -4.07 -0.06 -6.67 16 14 C -0.22 -1.02 6.31 -18.99 -0.12 -1.14 16 15 C 0.04 0.25 7.00 25.26 0.18 0.42 16 16 C 0.14 0.79 4.74 71.24 0.34 1.13 16 17 O -0.32 -3.31 10.12 -92.42 -0.94 -4.24 16 18 C 0.12 1.11 6.69 22.51 0.15 1.26 16 19 C -0.20 -1.14 9.04 22.37 0.20 -0.94 16 20 C -0.08 -0.35 8.66 22.26 0.19 -0.16 16 21 C -0.12 -0.65 5.39 -19.85 -0.11 -0.76 16 22 C -0.08 -0.11 2.79 71.23 0.20 0.09 16 23 O -0.56 -2.19 12.81 -148.98 -1.91 -4.09 16 24 Si 0.76 -0.32 29.85 68.60 2.05 1.72 16 25 C -0.06 -0.36 9.68 22.25 0.22 -0.14 16 26 C -0.16 -1.29 9.99 22.36 0.22 -1.07 16 27 O -0.18 -0.73 10.52 4.45 0.05 -0.68 16 28 C -0.01 0.03 12.03 66.89 0.80 0.83 16 29 C -0.20 0.33 10.60 23.65 0.25 0.58 16 30 C -0.12 0.46 5.61 30.61 0.17 0.63 16 31 C -0.10 0.42 4.98 30.61 0.15 0.57 16 32 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 34 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 35 H 0.06 -0.25 6.47 -2.39 -0.02 -0.27 16 36 H 0.08 -0.28 8.10 -2.39 -0.02 -0.30 16 37 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 39 H 0.41 -1.68 6.04 -92.71 -0.56 -2.24 16 40 H 0.10 0.16 7.65 -2.39 -0.02 0.14 16 41 H 0.11 0.68 6.02 -2.38 -0.01 0.67 16 42 H 0.15 0.18 6.30 -2.91 -0.02 0.16 16 43 H 0.15 0.04 4.86 -2.92 -0.01 0.03 16 44 H 0.10 -0.26 7.96 -2.39 -0.02 -0.28 16 45 H 0.39 -1.73 8.74 -74.06 -0.65 -2.38 16 46 H -0.28 -0.90 7.11 99.48 0.71 -0.19 16 47 H -0.30 -1.94 7.05 99.48 0.70 -1.24 16 48 H 0.14 0.44 8.06 -2.91 -0.02 0.41 16 49 H 0.14 0.84 8.06 -2.91 -0.02 0.82 16 50 H 0.25 -2.82 8.06 -2.91 -0.02 -2.85 16 51 H 0.18 -1.39 7.74 -2.91 -0.02 -1.41 16 52 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 53 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 54 H 0.06 -0.12 7.60 -2.39 -0.02 -0.14 16 55 H 0.08 -0.33 8.11 -2.38 -0.02 -0.35 16 Total: 0.00 -27.10 449.27 2.53 -24.57 By element: Atomic # 1 Polarization: -13.67 SS G_CDS: -0.22 Total: -13.90 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.64 Total: 9.56 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -1.88 Total: -1.38 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -3.05 Total: -20.57 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: 2.05 Total: 1.72 kcal Total: -27.10 2.53 -24.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_4549634.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.912 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds