Wall clock time and date at job start Sun Mar 7 2021 00:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99997 * 2 1 4 4 O 1.20826 * 120.00041 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99922 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47305 * 59.99940 * 5 3 2 7 7 C 1.52998 * 109.47362 * 180.02562 * 5 3 2 8 8 C 1.52996 * 109.47292 * 180.02562 * 7 5 3 9 9 C 1.53001 * 109.47170 * 299.99645 * 8 7 5 10 10 H 1.08997 * 109.47257 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.47012 * 300.00128 * 9 8 7 12 12 C 1.34774 * 120.00035 * 204.99832 * 11 9 8 13 13 O 1.21283 * 120.00040 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00384 * 180.02562 * 12 11 9 15 15 O 1.42894 * 109.47536 * 179.97438 * 14 12 11 16 16 C 1.35897 * 117.00168 * 179.97438 * 15 14 12 17 17 C 1.38708 * 120.05417 * 180.02562 * 16 15 14 18 18 N 1.48000 * 120.03292 * 359.95966 * 17 16 15 19 19 O 1.21804 * 120.00467 * 180.02562 * 18 17 16 20 20 O 1.21807 * 119.99748 * 0.02562 * 18 17 16 21 21 C 1.38166 * 119.94492 * 179.97438 * 17 16 15 22 22 C 1.38246 * 120.05710 * 359.97438 * 21 17 16 23 23 C 1.50699 * 119.94884 * 179.97438 * 22 21 17 24 24 O 1.42907 * 109.46603 * 65.00493 * 23 22 21 25 25 Si 1.86298 * 109.47032 * 184.99796 * 23 22 21 26 26 C 1.38295 * 120.10956 * 0.27243 * 22 21 17 27 27 C 1.38128 * 120.05137 * 359.45363 * 26 22 21 28 28 C 1.53003 * 109.47012 * 60.00147 * 9 8 7 29 29 C 1.53001 * 109.46760 * 300.00131 * 28 9 8 30 30 H 1.09000 * 109.46887 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46336 * 299.99307 * 1 2 3 32 32 H 1.08997 * 109.47222 * 59.99083 * 1 2 3 33 33 H 1.08996 * 109.47524 * 59.99525 * 7 5 3 34 34 H 1.09008 * 109.46901 * 299.99928 * 7 5 3 35 35 H 1.09005 * 109.47057 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47236 * 59.99872 * 8 7 5 37 37 H 0.97001 * 120.00093 * 25.00127 * 11 9 8 38 38 H 1.09005 * 109.47157 * 59.99508 * 14 12 11 39 39 H 1.09001 * 109.46707 * 300.00001 * 14 12 11 40 40 H 1.08006 * 119.97772 * 180.02562 * 21 17 16 41 41 H 1.08996 * 109.47117 * 305.00406 * 23 22 21 42 42 H 0.96697 * 114.00527 * 59.99993 * 24 23 22 43 43 H 1.48506 * 109.99834 * 58.68765 * 25 23 22 44 44 H 1.48502 * 110.00011 * 180.02562 * 25 23 22 45 45 H 1.07993 * 119.97443 * 179.72587 * 26 22 21 46 46 H 1.07997 * 120.02612 * 180.26833 * 27 26 22 47 47 H 1.09004 * 109.47055 * 59.99980 * 28 9 8 48 48 H 1.08996 * 109.47150 * 179.97438 * 28 9 8 49 49 H 1.08995 * 109.47097 * 299.99879 * 29 28 9 50 50 H 1.09005 * 109.46783 * 180.02562 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8908 7 6 4.0002 2.7420 0.0002 8 6 5.5281 2.8220 -0.0011 9 6 6.0762 2.1275 1.2472 10 1 7.1647 2.1841 1.2461 11 7 5.5534 2.7908 2.4443 12 6 6.2356 2.7227 3.6046 13 8 7.2821 2.1120 3.6579 14 6 5.6976 3.4045 4.8362 15 8 6.5924 3.1890 5.9293 16 6 6.2523 3.7420 7.1232 17 6 7.0756 3.5731 8.2266 18 7 8.3252 2.7894 8.1054 19 8 9.0476 2.6409 9.0749 20 8 8.6314 2.2928 7.0361 21 6 6.7280 4.1367 9.4393 22 6 5.5610 4.8691 9.5532 23 6 5.1839 5.4823 10.8771 24 8 6.1460 6.4776 11.2322 25 14 3.4999 6.2673 10.7408 26 6 4.7359 5.0348 8.4558 27 6 5.0819 4.4780 7.2400 28 6 5.6424 0.6603 1.2465 29 6 4.1145 0.5803 1.2477 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 3.6109 3.2356 0.8906 34 1 3.6101 3.2367 -0.8894 35 1 5.8372 3.8673 -0.0010 36 1 5.9171 2.3285 -0.8918 37 1 4.7162 3.2789 2.4018 38 1 4.7188 2.9921 5.0815 39 1 5.6043 4.4740 4.6479 40 1 7.3689 4.0058 10.2987 41 1 5.1628 4.7076 11.6435 42 1 6.2187 7.2000 10.5935 43 1 2.4958 5.2488 10.3409 44 1 3.1166 6.8762 12.0398 45 1 3.8226 5.6036 8.5484 46 1 4.4394 4.6113 6.3822 47 1 6.0314 0.1668 0.3558 48 1 6.0332 0.1654 2.1355 49 1 3.7255 1.0738 2.1383 50 1 3.8054 -0.4650 1.2476 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:53:47 Heat of formation + Delta-G solvation = -158.301741 kcal Electronic energy + Delta-G solvation = -37474.430981 eV Core-core repulsion = 32244.547301 eV Total energy + Delta-G solvation = -5229.883680 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.160 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -43.29863 -41.98819 -41.69482 -40.92813 -39.69175 -38.79961 -37.59641 -37.52319 -37.34886 -34.95844 -33.49092 -32.32801 -31.92285 -31.74565 -29.53230 -28.49436 -27.81935 -26.57007 -24.91882 -24.11858 -23.70836 -22.89762 -22.18823 -21.70034 -20.57313 -20.18464 -19.77920 -19.16517 -18.69249 -18.64537 -18.55713 -18.13554 -17.79981 -17.59522 -17.47806 -17.17304 -16.63020 -16.35493 -16.19915 -16.03682 -15.73744 -15.40979 -15.17994 -14.91375 -14.87609 -14.69040 -14.26086 -14.04224 -13.97188 -13.86489 -13.78411 -13.60405 -13.27803 -13.21457 -13.15197 -12.92110 -12.70804 -12.39189 -12.28164 -12.25078 -12.20430 -12.18106 -12.04622 -11.98433 -11.84138 -11.60956 -11.39700 -11.16099 -10.98180 -10.84319 -10.56297 -10.12954 -9.81251 -5.01403 -1.31858 -0.25540 0.15121 0.34738 1.12110 1.21788 1.26596 1.48982 1.64214 1.74293 2.01568 2.03713 2.35747 3.10961 3.24461 3.38631 3.48696 3.51562 3.58535 3.65928 3.70283 3.70528 3.78105 3.91561 3.96878 3.99901 4.07886 4.15983 4.26877 4.27353 4.29405 4.34442 4.36192 4.42375 4.44816 4.50055 4.62393 4.64808 4.69642 4.80657 4.82956 4.98806 5.06592 5.07303 5.12105 5.15683 5.18633 5.26930 5.31636 5.38683 5.49835 5.75079 6.41791 6.45299 6.67625 6.73686 7.17071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.535 6.535 5 C -0.076 4.076 6 H 0.128 0.872 7 C -0.101 4.101 8 C -0.115 4.115 9 C 0.144 3.856 10 H 0.076 0.924 11 N -0.704 5.704 12 C 0.509 3.491 13 O -0.561 6.561 14 C 0.021 3.979 15 O -0.289 6.289 16 C 0.194 3.806 17 C -0.104 4.104 18 N 0.034 4.966 19 O -0.205 6.205 20 O -0.170 6.170 21 C -0.004 4.004 22 C -0.151 4.151 23 C -0.081 4.081 24 O -0.557 6.557 25 Si 0.798 3.202 26 C -0.003 4.003 27 C -0.190 4.190 28 C -0.127 4.127 29 C -0.101 4.101 30 H 0.124 0.876 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.416 0.584 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.109 0.891 42 H 0.398 0.602 43 H -0.267 1.267 44 H -0.305 1.305 45 H 0.190 0.810 46 H 0.205 0.795 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.067 0.933 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 6.213 -5.683 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.307 3.693 4 O -0.425 6.425 5 C -0.095 4.095 6 H 0.145 0.855 7 C -0.139 4.139 8 C -0.153 4.153 9 C 0.040 3.960 10 H 0.094 0.906 11 N -0.360 5.360 12 C 0.295 3.705 13 O -0.438 6.438 14 C -0.055 4.055 15 O -0.199 6.199 16 C 0.144 3.856 17 C -0.190 4.190 18 N 0.544 4.456 19 O -0.411 6.411 20 O -0.385 6.385 21 C -0.023 4.023 22 C -0.152 4.152 23 C -0.189 4.189 24 O -0.365 6.365 25 Si 0.702 3.298 26 C -0.020 4.020 27 C -0.208 4.208 28 C -0.165 4.165 29 C -0.139 4.139 30 H 0.142 0.858 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.254 0.746 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.126 0.874 42 H 0.249 0.751 43 H -0.194 1.194 44 H -0.233 1.233 45 H 0.206 0.794 46 H 0.222 0.778 47 H 0.110 0.890 48 H 0.072 0.928 49 H 0.086 0.914 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.047 5.899 -4.856 14.266 hybrid contribution 0.574 -0.922 0.430 1.169 sum -11.473 4.977 -4.426 13.266 Atomic orbital electron populations 1.23496 0.75181 1.05411 1.02466 1.86521 1.24638 1.33488 1.83566 1.24338 0.92949 0.80942 0.71042 1.90667 1.68050 1.37169 1.46600 1.21243 0.85057 1.00244 1.02978 0.85466 1.21439 0.95727 0.92736 1.04010 1.21800 0.94252 1.02395 0.96839 1.21025 0.98956 0.91908 0.84147 0.90607 1.45842 1.26555 1.55135 1.08474 1.20410 0.84351 0.80577 0.85171 1.90848 1.24664 1.43189 1.85099 1.23143 0.94212 1.04813 0.83376 1.86471 1.48182 1.69137 1.16146 1.18967 0.92389 0.90408 0.83823 1.20851 0.89437 1.10830 0.97839 1.43894 1.02477 0.99273 0.99944 1.94506 1.50454 1.66082 1.30096 1.94677 1.78304 1.49880 1.15649 1.20854 0.96609 0.90676 0.94135 1.20454 0.94766 1.01573 0.98434 1.25453 1.05547 0.94300 0.93624 1.86535 1.61570 1.36642 1.51802 0.93853 0.70485 0.82237 0.83231 1.21706 0.98038 0.92387 0.89894 1.21809 0.95548 1.01163 1.02301 1.21890 0.95072 0.96280 1.03265 1.21416 0.95490 1.01265 0.95711 0.85775 0.91895 0.92061 0.90699 0.90503 0.89369 0.88496 0.74564 0.84412 0.83811 0.83257 0.87387 0.75149 1.19359 1.23346 0.79382 0.77825 0.89049 0.92842 0.91399 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.10 10.56 113.37 1.20 1.10 16 2 O -0.37 0.08 10.47 -51.38 -0.54 -0.45 16 3 C 0.46 -0.17 7.26 71.24 0.52 0.35 16 4 O -0.54 -2.64 15.73 21.96 0.35 -2.30 16 5 C -0.08 0.50 2.63 -11.54 -0.03 0.47 16 6 H 0.13 -1.15 8.14 -2.38 -0.02 -1.17 16 7 C -0.10 0.86 4.32 30.59 0.13 0.99 16 8 C -0.12 1.13 5.61 30.59 0.17 1.30 16 9 C 0.14 -0.74 2.78 44.99 0.13 -0.62 16 10 H 0.08 -0.01 7.58 -2.39 -0.02 -0.02 16 11 N -0.70 4.86 4.23 -442.54 -1.87 2.99 16 12 C 0.51 0.06 7.87 87.66 0.69 0.75 16 13 O -0.56 -7.40 16.16 16.00 0.26 -7.14 16 14 C 0.02 -0.16 5.22 71.24 0.37 0.21 16 15 O -0.29 -1.21 7.68 -63.36 -0.49 -1.69 16 16 C 0.19 0.10 6.67 22.51 0.15 0.25 16 17 C -0.10 -0.73 6.87 36.47 0.25 -0.48 16 18 N 0.03 0.57 4.45 -46.25 -0.21 0.36 16 19 O -0.20 -3.84 18.45 18.88 0.35 -3.49 16 20 O -0.17 -3.65 17.24 25.60 0.44 -3.21 16 21 C 0.00 -0.01 9.19 22.25 0.20 0.20 16 22 C -0.15 0.84 5.35 -19.85 -0.11 0.73 16 23 C -0.08 0.48 2.80 71.24 0.20 0.68 16 24 O -0.56 1.98 12.83 -148.98 -1.91 0.06 16 25 Si 0.80 -7.88 29.80 68.60 2.04 -5.84 16 26 C 0.00 0.04 8.66 22.26 0.19 0.23 16 27 C -0.19 2.04 9.04 22.37 0.20 2.24 16 28 C -0.13 0.56 5.60 30.60 0.17 0.73 16 29 C -0.10 0.62 4.98 30.60 0.15 0.77 16 30 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H 0.06 -0.22 8.13 -2.38 -0.02 -0.24 16 32 H 0.06 -0.18 8.13 -2.39 -0.02 -0.20 16 33 H 0.07 -0.70 6.46 -2.39 -0.02 -0.72 16 34 H 0.08 -0.52 8.10 -2.38 -0.02 -0.54 16 35 H 0.09 -0.94 8.14 -2.38 -0.02 -0.96 16 36 H 0.10 -1.08 8.14 -2.38 -0.02 -1.10 16 37 H 0.42 -5.52 6.87 -92.71 -0.64 -6.16 16 38 H 0.14 -2.10 7.67 -2.38 -0.02 -2.12 16 39 H 0.14 -2.31 7.66 -2.39 -0.02 -2.33 16 40 H 0.15 0.60 7.61 -2.91 -0.02 0.58 16 41 H 0.11 -0.41 7.96 -2.39 -0.02 -0.43 16 42 H 0.40 -4.96 8.70 -74.06 -0.64 -5.60 16 43 H -0.27 1.93 7.11 99.48 0.71 2.64 16 44 H -0.31 0.04 7.11 99.48 0.71 0.74 16 45 H 0.19 -3.70 4.90 -2.91 -0.01 -3.71 16 46 H 0.20 -4.18 6.30 -2.91 -0.02 -4.20 16 47 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 48 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.07 -0.43 7.60 -2.39 -0.02 -0.45 16 50 H 0.08 -0.38 8.11 -2.38 -0.02 -0.40 16 Total: 0.00 -41.61 417.31 2.79 -38.82 By element: Atomic # 1 Polarization: -27.78 SS G_CDS: -0.22 Total: -28.00 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 4.59 Total: 9.89 kcal Atomic # 7 Polarization: 5.43 SS G_CDS: -2.08 Total: 3.35 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -1.54 Total: -18.22 kcal Atomic # 14 Polarization: -7.88 SS G_CDS: 2.04 Total: -5.84 kcal Total: -41.61 2.79 -38.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.479 kcal (2) G-P(sol) polarization free energy of solvation -41.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds