Wall clock time and date at job start Sun Mar 7 2021 01:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99900 * 2 1 4 4 O 1.20827 * 120.00417 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00156 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47485 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47160 * 180.02562 * 6 5 3 8 8 H 1.09007 * 112.84387 * 316.18985 * 7 6 5 9 9 C 1.53771 * 113.69414 * 87.46069 * 7 6 5 10 10 C 1.53784 * 87.08101 * 139.99224 * 9 7 6 11 11 H 1.08995 * 113.69112 * 89.12699 * 10 9 7 12 12 N 1.46509 * 113.61307 * 220.02068 * 10 9 7 13 13 C 1.34769 * 120.00070 * 252.49621 * 12 10 9 14 14 O 1.21289 * 119.99788 * 359.97438 * 13 12 10 15 15 C 1.50700 * 120.00165 * 180.02562 * 13 12 10 16 16 C 1.53000 * 109.46817 * 299.99741 * 15 13 12 17 17 O 1.42902 * 109.47050 * 179.97438 * 15 13 12 18 18 C 1.35900 * 117.00035 * 204.83995 * 17 15 13 19 19 C 1.38728 * 120.05273 * 354.62294 * 18 17 15 20 20 C 1.38151 * 119.94126 * 180.25613 * 19 18 17 21 21 C 1.38262 * 120.05348 * 359.42338 * 20 19 18 22 22 C 1.50706 * 119.94359 * 180.27587 * 21 20 19 23 23 O 1.42900 * 109.46749 * 120.32178 * 22 21 20 24 24 Si 1.86295 * 109.46910 * 0.32603 * 22 21 20 25 25 C 1.38262 * 120.11442 * 0.60153 * 21 20 19 26 26 C 1.38154 * 120.05450 * 359.68050 * 25 21 20 27 27 C 1.53776 * 113.61281 * 185.00284 * 7 6 5 28 28 H 1.09003 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47226 * 299.99874 * 1 2 3 30 30 H 1.09004 * 109.46624 * 60.00058 * 1 2 3 31 31 H 1.08996 * 109.46916 * 60.00065 * 5 3 2 32 32 H 1.08999 * 109.47164 * 300.00279 * 5 3 2 33 33 H 1.08996 * 109.47180 * 59.99994 * 6 5 3 34 34 H 1.09007 * 109.46720 * 300.00033 * 6 5 3 35 35 H 1.09003 * 113.61539 * 25.44560 * 9 7 6 36 36 H 1.08994 * 113.61826 * 254.54134 * 9 7 6 37 37 H 0.97001 * 119.99747 * 72.50282 * 12 10 9 38 38 H 1.08999 * 109.47151 * 59.99911 * 15 13 12 39 39 H 1.08999 * 109.47398 * 300.00018 * 16 15 13 40 40 H 1.09003 * 109.46777 * 60.00316 * 16 15 13 41 41 H 1.09004 * 109.46703 * 179.97438 * 16 15 13 42 42 H 1.07995 * 120.03284 * 359.97438 * 19 18 17 43 43 H 1.07995 * 119.96928 * 179.72587 * 20 19 18 44 44 H 1.08996 * 109.47276 * 240.32338 * 22 21 20 45 45 H 0.96700 * 114.00535 * 300.00103 * 23 22 21 46 46 H 1.48503 * 110.00120 * 180.02562 * 24 22 21 47 47 H 1.48502 * 109.99912 * 301.31293 * 24 22 21 48 48 H 1.07998 * 119.97513 * 179.69647 * 25 21 20 49 49 H 1.07996 * 120.02876 * 180.02562 * 26 25 21 50 50 H 1.09001 * 113.62050 * 105.38175 * 27 7 6 51 51 H 1.09006 * 113.68936 * 334.48450 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0002 2.7421 0.0011 7 6 5.5281 2.8221 0.0011 8 1 5.9887 2.1201 0.6962 9 6 6.1484 2.7927 -1.4057 10 6 7.1398 3.8564 -0.9052 11 1 8.0416 3.4385 -0.4578 12 7 7.4257 4.9021 -1.8907 13 6 8.6216 4.9346 -2.5112 14 8 9.4614 4.0984 -2.2534 15 6 8.9158 6.0106 -3.5244 16 6 7.9068 5.9209 -4.6711 17 8 10.2377 5.8332 -4.0375 18 6 10.8600 6.9347 -4.5337 19 6 10.1734 8.1363 -4.6300 20 6 10.8066 9.2534 -5.1398 21 6 12.1270 9.1774 -5.5427 22 6 12.8172 10.3990 -6.0926 23 8 13.9495 10.7129 -5.2793 24 14 11.6321 11.8364 -6.0885 25 6 12.8133 7.9808 -5.4482 26 6 12.1829 6.8594 -4.9445 27 6 6.0698 4.2561 0.1244 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9564 0.7806 -0.8891 32 1 3.9558 0.7809 0.8908 33 1 3.6102 3.2360 0.8910 34 1 3.6108 3.2364 -0.8890 35 1 5.4782 3.1533 -2.1861 36 1 6.6180 1.8415 -1.6560 37 1 6.7541 5.5712 -2.0965 38 1 8.8393 6.9884 -3.0487 39 1 7.9833 4.9432 -5.1467 40 1 6.8987 6.0566 -4.2793 41 1 8.1194 6.6995 -5.4037 42 1 9.1434 8.1974 -4.3110 43 1 10.2712 10.1879 -5.2190 44 1 13.1461 10.2021 -7.1129 45 1 13.7310 10.9000 -4.3561 46 1 12.3004 13.0473 -6.6291 47 1 10.4353 11.5103 -6.9050 48 1 13.8432 7.9228 -5.7681 49 1 12.7195 5.9252 -4.8705 50 1 6.4760 4.4862 1.1094 51 1 5.3790 5.0178 -0.2371 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_10157680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:23:27 Heat of formation + Delta-G solvation = -140.516960 kcal Electronic energy + Delta-G solvation = -31544.850035 eV Core-core repulsion = 26991.216377 eV Total energy + Delta-G solvation = -4553.633658 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.85935 -41.52975 -40.93332 -39.76167 -38.86014 -37.62655 -37.14388 -35.34529 -33.83323 -32.75535 -31.83086 -31.46550 -29.08512 -27.06054 -26.66910 -26.55406 -25.42786 -24.22710 -23.15670 -22.30013 -21.56779 -21.42439 -20.53835 -19.53966 -18.61181 -18.54564 -18.05788 -17.68134 -17.51811 -17.28651 -16.86231 -16.75323 -16.33845 -16.21924 -15.99701 -15.68589 -15.66050 -15.29094 -15.10980 -14.67968 -14.53731 -14.44305 -14.14120 -14.08606 -13.82726 -13.72036 -13.50395 -13.36880 -13.32981 -13.26468 -13.02016 -12.86671 -12.68729 -12.29126 -12.22616 -12.05901 -12.04107 -11.89396 -11.81393 -11.68486 -11.67117 -11.37469 -11.16975 -10.85383 -10.40328 -10.09143 -10.05340 -9.22335 -4.98657 0.26207 0.29068 1.16075 1.34461 1.40212 1.54128 1.64560 1.79457 1.98917 2.52250 2.64637 3.44961 3.54060 3.55121 3.56299 3.66651 3.71712 3.75208 3.81370 3.85900 3.87544 3.90480 3.94527 4.17448 4.25419 4.26714 4.28106 4.31429 4.35878 4.50186 4.53568 4.57007 4.62305 4.66265 4.70164 4.70560 4.71181 4.81626 4.90482 4.95702 4.96537 5.07622 5.09273 5.11744 5.17929 5.24656 5.25813 5.34994 5.43131 5.48712 5.61835 5.69983 6.26988 6.47389 6.69864 6.79515 7.11672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.370 6.370 3 C 0.455 3.545 4 O -0.544 6.544 5 C -0.111 4.111 6 C -0.090 4.090 7 C -0.099 4.099 8 H 0.106 0.894 9 C -0.146 4.146 10 C 0.113 3.887 11 H 0.094 0.906 12 N -0.697 5.697 13 C 0.516 3.484 14 O -0.572 6.572 15 C 0.062 3.938 16 C -0.173 4.173 17 O -0.314 6.314 18 C 0.121 3.879 19 C -0.202 4.202 20 C -0.075 4.075 21 C -0.160 4.160 22 C -0.073 4.073 23 O -0.559 6.559 24 Si 0.781 3.219 25 C -0.059 4.059 26 C -0.167 4.167 27 C -0.130 4.130 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.419 0.581 38 H 0.130 0.870 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.162 0.838 43 H 0.154 0.846 44 H 0.103 0.897 45 H 0.395 0.605 46 H -0.303 1.303 47 H -0.280 1.280 48 H 0.133 0.867 49 H 0.125 0.875 50 H 0.080 0.920 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 1.959 2.855 7.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.117 4.117 8 H 0.124 0.876 9 C -0.185 4.185 10 C 0.008 3.992 11 H 0.112 0.888 12 N -0.350 5.350 13 C 0.302 3.698 14 O -0.451 6.451 15 C 0.003 3.997 16 C -0.230 4.230 17 O -0.228 6.228 18 C 0.076 3.924 19 C -0.220 4.220 20 C -0.092 4.092 21 C -0.161 4.161 22 C -0.183 4.183 23 O -0.367 6.367 24 Si 0.687 3.313 25 C -0.078 4.078 26 C -0.185 4.185 27 C -0.168 4.168 28 H 0.144 0.856 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.258 0.742 38 H 0.148 0.852 39 H 0.077 0.923 40 H 0.129 0.871 41 H 0.104 0.896 42 H 0.180 0.820 43 H 0.171 0.829 44 H 0.121 0.879 45 H 0.245 0.755 46 H -0.231 1.231 47 H -0.207 1.207 48 H 0.151 0.849 49 H 0.143 0.857 50 H 0.099 0.901 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.090 1.934 2.027 6.703 hybrid contribution -0.077 -0.419 -0.562 0.705 sum -6.167 1.515 1.465 6.517 Atomic orbital electron populations 1.23487 0.75246 1.05454 1.02358 1.86519 1.24695 1.33653 1.83749 1.24597 0.93599 0.80791 0.70943 1.90669 1.68381 1.37359 1.46989 1.21573 0.84816 1.00718 1.07693 1.21318 0.94434 0.93643 1.03359 1.22314 0.94103 0.97867 0.97463 0.87581 1.23583 0.97979 0.99239 0.97683 1.22591 0.97564 0.89083 0.89934 0.88814 1.45766 1.15201 1.32389 1.41669 1.20573 0.82373 0.85426 0.81458 1.90748 1.47888 1.41418 1.65010 1.22464 0.82396 0.99533 0.95293 1.22381 0.99037 1.04114 0.97501 1.86194 1.29712 1.32304 1.74541 1.19240 0.92360 0.86222 0.94594 1.21490 1.02237 0.91862 1.06432 1.21062 0.93496 0.98728 0.95932 1.20356 0.95260 0.96184 1.04302 1.25188 0.95325 1.01529 0.96252 1.86461 1.32426 1.91702 1.26070 0.93752 0.75119 0.73713 0.88710 1.20901 0.99966 0.90992 0.95899 1.20624 0.92911 1.00309 1.04690 1.23380 0.96649 0.97562 0.99208 0.85566 0.92112 0.92124 0.85996 0.85621 0.91314 0.91329 0.88701 0.91531 0.74246 0.85226 0.92324 0.87101 0.89607 0.82043 0.82924 0.87950 0.75538 1.23142 1.20689 0.84911 0.85660 0.90116 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.71 10.57 -51.36 -0.54 -1.26 16 3 C 0.46 0.95 7.96 71.24 0.57 1.51 16 4 O -0.54 -4.61 15.73 21.96 0.35 -4.27 16 5 C -0.11 0.63 5.80 29.85 0.17 0.80 16 6 C -0.09 0.51 4.35 30.59 0.13 0.65 16 7 C -0.10 0.75 3.65 -10.27 -0.04 0.72 16 8 H 0.11 -0.91 8.13 -2.38 -0.02 -0.93 16 9 C -0.15 0.81 7.43 31.12 0.23 1.04 16 10 C 0.11 -0.39 4.24 45.52 0.19 -0.20 16 11 H 0.09 0.18 7.46 -2.39 -0.02 0.16 16 12 N -0.70 3.22 5.25 -440.02 -2.31 0.91 16 13 C 0.52 1.63 7.23 87.66 0.63 2.26 16 14 O -0.57 -8.38 16.10 15.98 0.26 -8.12 16 15 C 0.06 -0.10 2.64 29.85 0.08 -0.02 16 16 C -0.17 1.12 9.07 71.98 0.65 1.77 16 17 O -0.31 -2.15 9.33 -73.38 -0.68 -2.83 16 18 C 0.12 0.50 6.60 22.50 0.15 0.65 16 19 C -0.20 0.40 8.24 22.37 0.18 0.59 16 20 C -0.07 0.20 8.66 22.25 0.19 0.39 16 21 C -0.16 -0.06 5.39 -19.85 -0.11 -0.17 16 22 C -0.07 0.03 2.82 71.24 0.20 0.23 16 23 O -0.56 -0.43 12.77 -148.98 -1.90 -2.33 16 24 Si 0.78 -2.53 29.78 68.60 2.04 -0.49 16 25 C -0.06 -0.19 9.60 22.26 0.21 0.02 16 26 C -0.17 -0.91 9.99 22.37 0.22 -0.69 16 27 C -0.13 1.02 7.39 31.12 0.23 1.25 16 28 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16 29 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 30 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 31 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 32 H 0.13 -1.14 8.14 -2.39 -0.02 -1.16 16 33 H 0.07 -0.25 8.10 -2.39 -0.02 -0.27 16 34 H 0.07 -0.28 7.81 -2.38 -0.02 -0.30 16 35 H 0.09 -0.64 7.90 -2.39 -0.02 -0.66 16 36 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.42 -4.99 8.14 -92.71 -0.76 -5.74 16 38 H 0.13 -1.02 6.32 -2.39 -0.02 -1.04 16 39 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.11 -1.44 7.56 -2.39 -0.02 -1.46 16 41 H 0.09 -0.63 6.90 -2.38 -0.02 -0.65 16 42 H 0.16 -1.39 5.43 -2.91 -0.02 -1.41 16 43 H 0.15 -1.21 4.87 -2.91 -0.01 -1.22 16 44 H 0.10 0.12 7.96 -2.39 -0.02 0.10 16 45 H 0.39 -2.89 8.70 -74.06 -0.64 -3.53 16 46 H -0.30 -1.47 7.11 99.48 0.71 -0.77 16 47 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 48 H 0.13 0.33 8.06 -2.91 -0.02 0.30 16 49 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 50 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 51 H 0.10 -1.05 8.08 -2.38 -0.02 -1.07 16 Total: 0.00 -29.74 419.95 1.92 -27.82 By element: Atomic # 1 Polarization: -20.99 SS G_CDS: -0.40 Total: -21.39 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.11 Total: 11.94 kcal Atomic # 7 Polarization: 3.22 SS G_CDS: -2.31 Total: 0.91 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -2.53 Total: -18.80 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: 2.04 Total: -0.49 kcal Total: -29.74 1.92 -27.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_10157680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.697 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds