Wall clock time and date at job start Sun Mar 7 2021 01:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99469 * 2 1 4 4 O 1.20820 * 120.00717 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99469 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.46971 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46894 * 179.97438 * 6 5 3 8 8 H 1.08992 * 112.84980 * 316.19294 * 7 6 5 9 9 C 1.53959 * 113.66399 * 87.44270 * 7 6 5 10 10 C 1.53780 * 87.01912 * 139.92882 * 9 7 6 11 11 H 1.09007 * 113.61561 * 89.22807 * 10 9 7 12 12 N 1.46499 * 113.61576 * 220.04626 * 10 9 7 13 13 C 1.34775 * 119.99935 * 254.13653 * 12 10 9 14 14 O 1.21696 * 120.00245 * 5.20355 * 13 12 10 15 15 C 1.46676 * 120.00174 * 185.19868 * 13 12 10 16 16 C 1.37872 * 126.23232 * 5.64494 * 15 13 12 17 17 C 1.39832 * 107.08485 * 179.72451 * 16 15 13 18 18 C 1.50700 * 126.06626 * 180.25805 * 17 16 15 19 19 O 1.42902 * 109.47202 * 65.20853 * 18 17 16 20 20 Si 1.86302 * 109.47071 * 185.20750 * 18 17 16 21 21 C 1.35456 * 107.86587 * 0.41177 * 17 16 15 22 22 N 1.35531 * 108.87021 * 359.58369 * 21 17 16 23 23 C 1.46496 * 125.67682 * 180.22811 * 22 21 17 24 24 C 1.53782 * 87.17628 * 334.63638 * 10 9 7 25 25 H 1.08995 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46910 * 299.99949 * 1 2 3 27 27 H 1.08999 * 109.47431 * 60.00154 * 1 2 3 28 28 H 1.08993 * 109.47327 * 59.99759 * 5 3 2 29 29 H 1.09002 * 109.47057 * 299.99716 * 5 3 2 30 30 H 1.09006 * 109.47060 * 59.99995 * 6 5 3 31 31 H 1.09002 * 109.47076 * 299.99800 * 6 5 3 32 32 H 1.08996 * 113.61743 * 25.40917 * 9 7 6 33 33 H 1.09000 * 113.66232 * 254.45472 * 9 7 6 34 34 H 0.96999 * 120.00263 * 74.14000 * 12 10 9 35 35 H 1.07998 * 126.45635 * 359.97438 * 16 15 13 36 36 H 1.09001 * 109.47563 * 305.20856 * 18 17 16 37 37 H 0.96704 * 113.99979 * 60.00021 * 19 18 17 38 38 H 1.48502 * 110.00085 * 58.68112 * 20 18 17 39 39 H 1.48502 * 110.00172 * 180.02562 * 20 18 17 40 40 H 1.08003 * 125.56386 * 179.84182 * 21 17 16 41 41 H 1.09002 * 109.47011 * 85.95288 * 23 22 21 42 42 H 1.08997 * 109.47032 * 205.95056 * 23 22 21 43 43 H 1.08999 * 109.47261 * 325.95418 * 23 22 21 44 44 H 1.08998 * 113.61509 * 139.93266 * 24 10 9 45 45 H 1.08993 * 113.61619 * 270.75843 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 -0.0011 7 6 5.5280 2.8222 -0.0011 8 1 5.9885 2.1208 0.6945 9 6 6.1485 2.7912 -1.4097 10 6 7.1383 3.8566 -0.9098 11 1 8.0409 3.4389 -0.4635 12 7 7.4227 4.9021 -1.8957 13 6 8.6062 4.9166 -2.5403 14 8 9.4006 4.0097 -2.3745 15 6 8.9369 6.0253 -3.4419 16 6 8.1872 7.1652 -3.6407 17 6 8.8731 7.9506 -4.5724 18 6 8.4344 9.2948 -5.0938 19 8 8.4384 10.2444 -4.0259 20 14 9.6071 9.8560 -6.4283 21 6 10.0001 7.2873 -4.9257 22 7 10.0524 6.1176 -4.2431 23 6 11.1183 5.1175 -4.3421 24 6 6.0696 4.2564 0.1212 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.9557 0.7810 -0.8907 29 1 3.9564 0.7807 0.8892 30 1 3.6106 3.2365 0.8890 31 1 3.6100 3.2360 -0.8911 32 1 5.4778 3.1504 -2.1903 33 1 6.6195 1.8405 -1.6594 34 1 6.7592 5.5841 -2.0846 35 1 7.2493 7.4078 -3.1635 36 1 7.4281 9.2144 -5.5048 37 1 9.3037 10.3674 -3.6122 38 1 9.6361 8.8611 -7.5303 39 1 9.1858 11.1809 -6.9504 40 1 10.7386 7.6357 -5.6325 41 1 11.9246 5.3768 -3.6559 42 1 10.7213 4.1364 -4.0820 43 1 11.5023 5.0954 -5.3620 44 1 6.4771 4.4866 1.1056 45 1 5.3783 5.0179 -0.2395 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_10803934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:23:35 Heat of formation + Delta-G solvation = -83.631686 kcal Electronic energy + Delta-G solvation = -26626.295912 eV Core-core repulsion = 22612.149025 eV Total energy + Delta-G solvation = -4014.146887 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.55702 -41.56927 -40.86576 -39.29431 -37.67845 -37.61885 -35.35403 -33.96187 -33.27598 -30.84993 -29.08232 -28.32235 -26.90850 -26.60913 -25.68708 -24.34845 -22.62010 -21.53656 -21.25449 -20.90827 -20.15517 -18.78628 -18.62775 -17.74356 -17.69889 -17.52269 -17.11988 -16.80484 -16.59041 -16.25061 -15.86438 -15.59702 -15.47427 -15.17787 -14.98805 -14.56918 -14.45735 -14.13269 -14.07805 -13.83546 -13.51949 -13.40427 -13.36139 -13.26148 -13.12300 -13.02194 -12.69375 -12.29529 -12.26082 -11.93542 -11.91171 -11.83031 -11.70774 -11.39677 -11.20954 -11.05334 -10.30028 -10.12735 -9.70638 -9.26257 -4.94629 0.39269 1.14367 1.42011 1.51995 1.59935 1.73690 1.77737 2.04592 2.26206 2.36052 3.50305 3.53202 3.64943 3.70766 3.76083 3.83610 3.84899 3.86857 4.04313 4.15645 4.23919 4.24146 4.25228 4.29558 4.37818 4.40074 4.52537 4.63958 4.66247 4.67377 4.69117 4.73144 4.77089 4.79049 4.87535 4.94518 5.06622 5.10436 5.18868 5.23430 5.34535 5.41972 5.57483 5.69536 5.88066 6.16968 6.46140 6.68236 6.90230 7.10468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.545 6.545 5 C -0.110 4.110 6 C -0.092 4.092 7 C -0.095 4.095 8 H 0.112 0.888 9 C -0.146 4.146 10 C 0.118 3.882 11 H 0.101 0.899 12 N -0.699 5.699 13 C 0.586 3.414 14 O -0.583 6.583 15 C -0.080 4.080 16 C -0.114 4.114 17 C -0.221 4.221 18 C -0.038 4.038 19 O -0.561 6.561 20 Si 0.780 3.220 21 C 0.035 3.965 22 N -0.412 5.412 23 C 0.061 3.939 24 C -0.133 4.133 25 H 0.127 0.873 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.413 0.587 35 H 0.154 0.846 36 H 0.101 0.899 37 H 0.393 0.607 38 H -0.283 1.283 39 H -0.305 1.305 40 H 0.203 0.797 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -1.385 0.420 3.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.435 6.435 5 C -0.147 4.147 6 C -0.129 4.129 7 C -0.114 4.114 8 H 0.130 0.870 9 C -0.185 4.185 10 C 0.013 3.987 11 H 0.119 0.881 12 N -0.349 5.349 13 C 0.376 3.624 14 O -0.465 6.465 15 C -0.193 4.193 16 C -0.141 4.141 17 C -0.227 4.227 18 C -0.148 4.148 19 O -0.368 6.368 20 Si 0.686 3.314 21 C -0.102 4.102 22 N -0.084 5.084 23 C -0.079 4.079 24 C -0.171 4.171 25 H 0.146 0.854 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.250 0.750 35 H 0.171 0.829 36 H 0.118 0.882 37 H 0.243 0.757 38 H -0.210 1.210 39 H -0.233 1.233 40 H 0.220 0.780 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.102 0.898 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.016 -1.789 -0.416 3.532 hybrid contribution -1.314 0.070 -0.011 1.316 sum 1.702 -1.720 -0.426 2.457 Atomic orbital electron populations 1.23488 0.75259 1.05494 1.02319 1.86518 1.24679 1.33557 1.83748 1.24610 0.93624 0.80800 0.70927 1.90671 1.68404 1.37436 1.47011 1.21566 0.84798 1.00495 1.07813 1.21325 0.94616 0.93820 1.03166 1.22349 0.93988 0.97671 0.97383 0.86978 1.23595 0.98004 0.99378 0.97536 1.22611 0.97752 0.88745 0.89547 0.88101 1.45642 1.16336 1.31638 1.41277 1.17233 0.82037 0.83860 0.79319 1.90766 1.50524 1.39059 1.66158 1.20116 0.93817 0.99934 1.05388 1.21407 1.00196 0.92437 1.00043 1.19903 0.98064 0.99577 1.05152 1.24482 1.06823 0.85921 0.97605 1.86445 1.38259 1.60725 1.51409 0.93979 0.85909 0.75883 0.75584 1.22340 1.00674 0.86565 1.00588 1.44040 1.17266 1.16576 1.30513 1.22440 0.88878 0.91408 1.05185 1.23382 0.96773 0.97617 0.99336 0.85444 0.92119 0.92231 0.85969 0.85315 0.91307 0.91810 0.89585 0.91050 0.74979 0.82868 0.88204 0.75745 1.20984 1.23288 0.78048 0.89442 0.89757 0.87116 0.89788 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.09 10.57 -51.41 -0.54 -1.63 16 3 C 0.46 1.59 7.96 71.24 0.57 2.16 16 4 O -0.54 -5.61 15.73 21.98 0.35 -5.26 16 5 C -0.11 0.47 5.80 29.85 0.17 0.64 16 6 C -0.09 0.32 4.34 30.59 0.13 0.46 16 7 C -0.10 0.55 3.65 -10.20 -0.04 0.52 16 8 H 0.11 -0.89 8.13 -2.39 -0.02 -0.91 16 9 C -0.15 0.45 7.45 31.18 0.23 0.69 16 10 C 0.12 -0.13 4.18 45.52 0.19 0.06 16 11 H 0.10 0.23 7.57 -2.38 -0.02 0.21 16 12 N -0.70 -0.32 5.33 -443.99 -2.37 -2.69 16 13 C 0.59 3.71 7.77 86.45 0.67 4.39 16 14 O -0.58 -7.15 14.32 -4.34 -0.06 -7.21 16 15 C -0.08 -0.36 6.88 40.35 0.28 -0.08 16 16 C -0.11 -0.24 10.28 22.57 0.23 -0.01 16 17 C -0.22 -0.09 5.43 -20.12 -0.11 -0.20 16 18 C -0.04 0.02 3.02 71.24 0.22 0.23 16 19 O -0.56 -0.37 12.88 -148.98 -1.92 -2.29 16 20 Si 0.78 -2.47 30.60 68.60 2.10 -0.37 16 21 C 0.04 -0.06 9.94 83.48 0.83 0.77 16 22 N -0.41 -0.80 3.16 -534.32 -1.69 -2.48 16 23 C 0.06 -0.09 10.64 127.77 1.36 1.27 16 24 C -0.13 0.67 7.39 31.12 0.23 0.90 16 25 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 26 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 27 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 28 H 0.12 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.13 -1.07 8.14 -2.39 -0.02 -1.09 16 30 H 0.07 -0.10 8.10 -2.38 -0.02 -0.12 16 31 H 0.06 -0.06 7.81 -2.39 -0.02 -0.08 16 32 H 0.09 -0.23 7.90 -2.39 -0.02 -0.25 16 33 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.41 -1.50 7.66 -92.71 -0.71 -2.21 16 35 H 0.15 -0.14 7.49 -2.91 -0.02 -0.16 16 36 H 0.10 0.11 7.96 -2.39 -0.02 0.10 16 37 H 0.39 -2.81 8.70 -74.05 -0.64 -3.46 16 38 H -0.28 -0.33 7.11 99.48 0.71 0.37 16 39 H -0.30 -1.55 7.11 99.48 0.71 -0.84 16 40 H 0.20 -1.76 6.21 -2.91 -0.02 -1.78 16 41 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.08 0.29 6.22 -2.39 -0.01 0.27 16 43 H 0.11 -0.79 8.14 -2.39 -0.02 -0.81 16 44 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.09 -0.55 8.07 -2.39 -0.02 -0.57 16 Total: 0.00 -24.64 377.18 1.72 -22.92 By element: Atomic # 1 Polarization: -13.66 SS G_CDS: -0.30 Total: -13.96 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 6.16 Total: 12.97 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: -4.06 Total: -5.17 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -2.18 Total: -16.39 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 2.10 Total: -0.37 kcal Total: -24.64 1.72 -22.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_10803934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.710 kcal (2) G-P(sol) polarization free energy of solvation -24.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds