Wall clock time and date at job start Sun Mar 7 2021 01:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99855 * 2 1 4 4 O 1.20830 * 119.99809 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99988 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47024 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47206 * 180.02562 * 6 5 3 8 8 H 1.08998 * 112.84809 * 316.19607 * 7 6 5 9 9 C 1.53789 * 113.69252 * 87.46426 * 7 6 5 10 10 C 1.53775 * 87.08084 * 139.99617 * 9 7 6 11 11 H 1.08994 * 113.69455 * 89.12764 * 10 9 7 12 12 N 1.46499 * 113.61244 * 220.02167 * 10 9 7 13 13 C 1.34781 * 120.00098 * 252.49590 * 12 10 9 14 14 O 1.21589 * 119.99673 * 0.02562 * 13 12 10 15 15 C 1.47528 * 120.00023 * 179.97438 * 13 12 10 16 16 C 1.40146 * 120.18966 * 180.02562 * 15 13 12 17 17 O 1.35651 * 120.14785 * 359.97438 * 16 15 13 18 18 C 1.42903 * 116.99763 * 180.02562 * 17 16 15 19 19 C 1.38704 * 119.69777 * 179.97438 * 16 15 13 20 20 C 1.38061 * 120.08805 * 359.71910 * 19 16 15 21 21 C 1.38544 * 120.38356 * 0.55684 * 20 19 16 22 22 C 1.50707 * 119.84445 * 179.72302 * 21 20 19 23 23 O 1.42903 * 109.46442 * 244.72533 * 22 21 20 24 24 Si 1.86293 * 109.47256 * 4.72100 * 22 21 20 25 25 C 1.37784 * 120.30397 * 359.44472 * 21 20 19 26 26 C 1.53780 * 113.61612 * 185.00110 * 7 6 5 27 27 H 1.08998 * 109.47191 * 299.99615 * 1 2 3 28 28 H 1.09003 * 109.47324 * 60.00004 * 1 2 3 29 29 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46977 * 60.00159 * 5 3 2 31 31 H 1.09000 * 109.47130 * 299.99865 * 5 3 2 32 32 H 1.09001 * 109.47199 * 60.00191 * 6 5 3 33 33 H 1.09007 * 109.47343 * 300.00424 * 6 5 3 34 34 H 1.09000 * 113.61263 * 25.44133 * 9 7 6 35 35 H 1.09001 * 113.61232 * 254.54173 * 9 7 6 36 36 H 0.97007 * 120.00474 * 72.49227 * 12 10 9 37 37 H 1.08998 * 109.47022 * 60.00387 * 18 17 16 38 38 H 1.08998 * 109.46975 * 180.02562 * 18 17 16 39 39 H 1.09004 * 109.46988 * 300.00206 * 18 17 16 40 40 H 1.08004 * 119.95802 * 180.02562 * 19 16 15 41 41 H 1.08001 * 119.80599 * 180.30038 * 20 19 16 42 42 H 1.08999 * 109.47345 * 124.72604 * 22 21 20 43 43 H 0.96700 * 114.00311 * 60.00230 * 23 22 21 44 44 H 1.48506 * 109.99973 * 180.02562 * 24 22 21 45 45 H 1.48493 * 110.00375 * 301.32185 * 24 22 21 46 46 H 1.08000 * 120.04332 * 180.25289 * 25 21 20 47 47 H 1.08993 * 113.61514 * 105.38662 * 26 7 6 48 48 H 1.08996 * 113.61403 * 334.47687 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7421 0.0011 7 6 5.5279 2.8223 0.0011 8 1 5.9886 2.1203 0.6960 9 6 6.1482 2.7930 -1.4059 10 6 7.1396 3.8566 -0.9053 11 1 8.0415 3.4387 -0.4581 12 7 7.4254 4.9023 -1.8907 13 6 8.6214 4.9349 -2.5113 14 8 9.4630 4.0960 -2.2536 15 6 8.9089 5.9877 -3.5039 16 6 10.1510 6.0250 -4.1520 17 8 11.0953 5.0932 -3.8690 18 6 12.3373 5.1951 -4.5685 19 6 10.4102 7.0191 -5.0839 20 6 9.4460 7.9634 -5.3751 21 6 8.2190 7.9332 -4.7324 22 6 7.1776 8.9737 -5.0551 23 8 6.9326 9.7767 -3.8987 24 14 7.7892 10.0547 -6.4435 25 6 7.9444 6.9529 -3.8039 26 6 6.0696 4.2563 0.1244 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9564 0.7807 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 3.6100 3.2360 0.8911 33 1 3.6106 3.2365 -0.8889 34 1 5.4779 3.1536 -2.1862 35 1 6.6179 1.8417 -1.6562 36 1 6.7538 5.5714 -2.0966 37 1 12.8001 6.1572 -4.3487 38 1 13.0007 4.3911 -4.2498 39 1 12.1581 5.1145 -5.6407 40 1 11.3658 7.0516 -5.5861 41 1 9.6510 8.7325 -6.1051 42 1 6.2536 8.4812 -5.3579 43 1 7.7130 10.2456 -3.5728 44 1 6.7714 11.0854 -6.7708 45 1 9.0653 10.7072 -6.0550 46 1 6.9851 6.9310 -3.3084 47 1 6.4758 4.4863 1.1093 48 1 5.3779 5.0169 -0.2376 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_12496546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:24:56 Heat of formation + Delta-G solvation = -137.386053 kcal Electronic energy + Delta-G solvation = -30370.258230 eV Core-core repulsion = 25972.297957 eV Total energy + Delta-G solvation = -4397.960273 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -41.84044 -41.52862 -40.70798 -39.27975 -39.20342 -37.62835 -37.23165 -35.19622 -33.57355 -32.31900 -31.81216 -29.11078 -28.52561 -26.96906 -26.61194 -26.16536 -25.26008 -23.39663 -22.30661 -21.61426 -21.40584 -20.60158 -19.42574 -18.62472 -18.41411 -18.15284 -17.68631 -17.51350 -17.29582 -16.87113 -16.84159 -16.22566 -16.13694 -15.96614 -15.87143 -15.82711 -15.28701 -14.85120 -14.61057 -14.53394 -14.47928 -14.13813 -13.81978 -13.59286 -13.49246 -13.39521 -13.26995 -13.10867 -13.00753 -12.68321 -12.43187 -12.27736 -12.20989 -12.04454 -11.89937 -11.81695 -11.70207 -11.65044 -11.38011 -11.18128 -10.96185 -10.54191 -10.25842 -9.96476 -9.30152 -4.89870 -0.26739 0.21160 1.15504 1.33062 1.60757 1.76457 1.78039 1.99009 2.15616 2.27286 2.67111 3.41714 3.50817 3.53848 3.58730 3.64189 3.72845 3.74942 3.85883 3.88483 3.99096 4.14912 4.17459 4.25137 4.26444 4.30695 4.30779 4.36119 4.39601 4.53723 4.62087 4.64820 4.66881 4.69973 4.70605 4.75226 4.79392 4.88602 4.92252 4.95521 5.07389 5.11073 5.13178 5.24522 5.27292 5.36319 5.44380 5.56159 5.64227 6.30408 6.51350 6.53570 6.69439 7.22491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.545 6.545 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.095 4.095 8 H 0.110 0.890 9 C -0.145 4.145 10 C 0.114 3.886 11 H 0.096 0.904 12 N -0.708 5.708 13 C 0.556 3.444 14 O -0.565 6.565 15 C -0.198 4.198 16 C 0.172 3.828 17 O -0.313 6.313 18 C 0.011 3.989 19 C -0.212 4.212 20 C -0.044 4.044 21 C -0.164 4.164 22 C -0.074 4.074 23 O -0.547 6.547 24 Si 0.763 3.237 25 C -0.016 4.016 26 C -0.134 4.134 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.410 0.590 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.130 0.870 43 H 0.386 0.614 44 H -0.306 1.306 45 H -0.279 1.279 46 H 0.149 0.851 47 H 0.080 0.920 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -0.111 -3.507 3.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.301 3.699 4 O -0.435 6.435 5 C -0.147 4.147 6 C -0.128 4.128 7 C -0.114 4.114 8 H 0.128 0.872 9 C -0.184 4.184 10 C 0.009 3.991 11 H 0.114 0.886 12 N -0.360 5.360 13 C 0.345 3.655 14 O -0.445 6.445 15 C -0.202 4.202 16 C 0.123 3.877 17 O -0.224 6.224 18 C -0.083 4.083 19 C -0.231 4.231 20 C -0.062 4.062 21 C -0.165 4.165 22 C -0.183 4.183 23 O -0.355 6.355 24 Si 0.668 3.332 25 C -0.035 4.035 26 C -0.172 4.172 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.248 0.752 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.180 0.820 41 H 0.173 0.827 42 H 0.147 0.853 43 H 0.236 0.764 44 H -0.235 1.235 45 H -0.205 1.205 46 H 0.167 0.833 47 H 0.098 0.902 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.783 -0.045 -3.500 3.586 hybrid contribution -0.145 0.852 0.945 1.280 sum 0.638 0.807 -2.555 2.754 Atomic orbital electron populations 1.23488 0.75252 1.05484 1.02330 1.86518 1.24685 1.33546 1.83745 1.24588 0.93576 0.80807 0.70925 1.90672 1.68380 1.37428 1.47017 1.21562 0.84856 1.00473 1.07807 1.21317 0.94445 0.93852 1.03219 1.22308 0.94096 0.97552 0.97447 0.87232 1.23563 0.97930 0.99299 0.97560 1.22565 0.97541 0.89091 0.89907 0.88607 1.45858 1.15669 1.32297 1.42183 1.18334 0.82126 0.84190 0.80838 1.90799 1.47468 1.41022 1.65231 1.19454 0.95084 1.01333 1.04324 1.19419 0.88159 0.88050 0.92060 1.86338 1.24736 1.48360 1.63009 1.23451 0.82766 1.04421 0.97678 1.21468 1.03073 0.96876 1.01661 1.21310 0.91495 0.96918 0.96446 1.20161 0.96624 0.99248 1.00470 1.25125 1.02160 0.95210 0.95815 1.86583 1.39895 1.63959 1.45091 0.94148 0.76103 0.80224 0.82679 1.21107 0.97643 0.90416 0.94324 1.23386 0.96826 0.97707 0.99259 0.92154 0.92165 0.85465 0.85889 0.85442 0.91371 0.91604 0.89196 0.91173 0.75206 0.91031 0.87417 0.90656 0.82041 0.82666 0.85260 0.76449 1.23463 1.20542 0.83324 0.90166 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.14 10.57 -51.43 -0.54 -1.69 16 3 C 0.46 1.68 7.96 71.24 0.57 2.25 16 4 O -0.54 -5.65 15.73 21.95 0.35 -5.30 16 5 C -0.11 0.42 5.80 29.85 0.17 0.59 16 6 C -0.09 0.27 4.34 30.59 0.13 0.40 16 7 C -0.10 0.44 3.65 -10.27 -0.04 0.40 16 8 H 0.11 -0.70 8.13 -2.39 -0.02 -0.72 16 9 C -0.14 0.28 7.43 31.12 0.23 0.51 16 10 C 0.11 0.11 4.24 45.52 0.19 0.31 16 11 H 0.10 0.53 7.46 -2.39 -0.02 0.51 16 12 N -0.71 -1.48 5.31 -443.21 -2.35 -3.83 16 13 C 0.56 5.11 7.76 86.69 0.67 5.78 16 14 O -0.57 -10.00 14.76 16.92 0.25 -9.75 16 15 C -0.20 -1.09 5.89 -20.01 -0.12 -1.20 16 16 C 0.17 0.95 6.70 22.84 0.15 1.10 16 17 O -0.31 -2.71 8.57 -68.74 -0.59 -3.30 16 18 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 19 C -0.21 0.26 9.03 22.34 0.20 0.46 16 20 C -0.04 0.16 8.65 22.30 0.19 0.36 16 21 C -0.16 0.43 5.35 -19.90 -0.11 0.32 16 22 C -0.07 0.29 2.79 71.24 0.20 0.49 16 23 O -0.55 0.41 12.83 -148.98 -1.91 -1.50 16 24 Si 0.76 -3.64 29.86 68.60 2.05 -1.59 16 25 C -0.02 0.01 9.16 22.52 0.21 0.21 16 26 C -0.13 0.46 7.39 31.12 0.23 0.69 16 27 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 28 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 29 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.12 -0.82 8.14 -2.39 -0.02 -0.84 16 31 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 32 H 0.07 -0.06 8.10 -2.39 -0.02 -0.08 16 33 H 0.07 -0.06 7.81 -2.38 -0.02 -0.08 16 34 H 0.09 -0.22 7.90 -2.39 -0.02 -0.24 16 35 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.41 -1.32 6.76 -92.70 -0.63 -1.95 16 37 H 0.07 -0.33 7.66 -2.39 -0.02 -0.34 16 38 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.07 -0.38 7.66 -2.38 -0.02 -0.40 16 40 H 0.16 -1.02 6.30 -2.91 -0.02 -1.04 16 41 H 0.16 -1.32 4.81 -2.91 -0.01 -1.33 16 42 H 0.13 -0.78 7.96 -2.39 -0.02 -0.79 16 43 H 0.39 -2.25 8.70 -74.06 -0.64 -2.89 16 44 H -0.31 -1.18 7.11 99.48 0.71 -0.47 16 45 H -0.28 0.43 7.01 99.48 0.70 1.13 16 46 H 0.15 -0.64 6.40 -2.91 -0.02 -0.66 16 47 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H 0.10 -0.46 8.08 -2.39 -0.02 -0.48 16 Total: 0.00 -27.32 397.10 2.21 -25.11 By element: Atomic # 1 Polarization: -12.88 SS G_CDS: -0.24 Total: -13.12 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 5.20 Total: 14.96 kcal Atomic # 7 Polarization: -1.48 SS G_CDS: -2.35 Total: -3.83 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -2.45 Total: -21.54 kcal Atomic # 14 Polarization: -3.64 SS G_CDS: 2.05 Total: -1.59 kcal Total: -27.32 2.21 -25.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_12496546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.275 kcal (2) G-P(sol) polarization free energy of solvation -27.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds