Wall clock time and date at job start Sun Mar 7 2021 01:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99360 * 2 1 4 4 O 1.20821 * 120.00638 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99611 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.46877 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46900 * 179.97438 * 6 5 3 8 8 H 1.09000 * 112.85133 * 43.80072 * 7 6 5 9 9 C 1.53787 * 113.61178 * 174.99741 * 7 6 5 10 10 C 1.53784 * 87.07923 * 140.06478 * 9 7 6 11 11 H 1.09002 * 113.61478 * 89.11632 * 10 9 7 12 12 N 1.46497 * 113.61569 * 220.01663 * 10 9 7 13 13 C 1.34769 * 120.00274 * 204.99925 * 12 10 9 14 14 O 1.21566 * 119.99906 * 359.97438 * 13 12 10 15 15 C 1.47729 * 120.00096 * 180.02562 * 13 12 10 16 16 C 1.39632 * 120.11768 * 179.72716 * 15 13 12 17 17 C 1.37854 * 119.87578 * 179.69393 * 16 15 13 18 18 C 1.50702 * 119.94073 * 180.31566 * 17 16 15 19 19 O 1.42901 * 109.46746 * 15.28466 * 18 17 16 20 20 Si 1.86302 * 109.47103 * 135.28191 * 18 17 16 21 21 C 1.38633 * 120.12314 * 0.60018 * 17 16 15 22 22 F 1.35094 * 119.88310 * 179.69217 * 21 17 16 23 23 C 1.38686 * 120.23621 * 359.67548 * 21 17 16 24 24 C 1.37809 * 120.11803 * 0.02562 * 23 21 17 25 25 C 1.53779 * 87.08045 * 334.56667 * 10 9 7 26 26 H 1.09002 * 109.46375 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47101 * 300.00152 * 1 2 3 28 28 H 1.08991 * 109.46977 * 60.00600 * 1 2 3 29 29 H 1.08995 * 109.46888 * 59.99445 * 5 3 2 30 30 H 1.09002 * 109.46977 * 299.99518 * 5 3 2 31 31 H 1.08995 * 109.47852 * 59.99990 * 6 5 3 32 32 H 1.09006 * 109.47375 * 299.99465 * 6 5 3 33 33 H 1.09004 * 113.61202 * 254.61231 * 9 7 6 34 34 H 1.08994 * 113.61447 * 25.51662 * 9 7 6 35 35 H 0.97009 * 119.99534 * 24.99936 * 12 10 9 36 36 H 1.07999 * 120.05794 * 359.97438 * 16 15 13 37 37 H 1.08993 * 109.47528 * 255.28674 * 18 17 16 38 38 H 0.96706 * 114.00292 * 60.00008 * 19 18 17 39 39 H 1.48502 * 109.99786 * 58.68385 * 20 18 17 40 40 H 1.48500 * 109.99860 * 180.02562 * 20 18 17 41 41 H 1.07993 * 119.93766 * 179.97438 * 23 21 17 42 42 H 1.07995 * 120.06471 * 179.97438 * 24 23 21 43 43 H 1.09006 * 113.61307 * 270.88660 * 25 10 9 44 44 H 1.08999 * 113.69146 * 139.99146 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2751 -0.0006 6 6 4.0000 2.7422 0.0002 7 6 5.5279 2.8224 0.0002 8 1 5.9886 2.1209 -0.6954 9 6 6.0695 4.2565 -0.1219 10 6 7.1396 3.8560 0.9074 11 1 8.0409 3.4372 0.4598 12 7 7.4254 4.9009 1.8937 13 6 8.6213 4.9330 2.5142 14 8 9.4627 4.0945 2.2559 15 6 8.9092 5.9864 3.5091 16 6 10.1454 6.0185 4.1577 17 6 10.4111 7.0074 5.0806 18 6 11.7474 7.0477 5.7762 19 8 12.6727 6.2113 5.0788 20 14 12.3850 8.7981 5.7955 21 6 9.4492 7.9615 5.3744 22 9 9.7125 8.9248 6.2843 23 6 8.2177 7.9309 4.7374 24 6 7.9438 6.9503 3.8086 25 6 6.1482 2.7919 1.4071 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 3.9556 0.7811 -0.8907 30 1 3.9564 0.7808 0.8892 31 1 3.6107 3.2358 0.8906 32 1 3.6099 3.2369 -0.8894 33 1 6.4757 4.4874 -1.1067 34 1 5.3778 5.0168 0.2407 35 1 6.7537 5.5698 2.1001 36 1 10.8935 5.2726 3.9333 37 1 11.6351 6.6906 6.7998 38 1 12.8218 6.4709 4.1592 39 1 11.4164 9.6838 6.4902 40 1 13.7026 8.8511 6.4782 41 1 7.4718 8.6762 4.9703 42 1 6.9844 6.9270 3.3134 43 1 5.4779 3.1519 2.1877 44 1 6.6166 1.8400 1.6571 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_12496548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:25:06 Heat of formation + Delta-G solvation = -139.839514 kcal Electronic energy + Delta-G solvation = -28095.133424 eV Core-core repulsion = 23701.832597 eV Total energy + Delta-G solvation = -4393.300827 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.141 amu Computer time = 5.03 seconds Orbital eigenvalues (eV) -50.42386 -41.64631 -41.42732 -40.30162 -39.19355 -37.70069 -37.61803 -35.27637 -33.55914 -32.54600 -31.82520 -29.09319 -27.32493 -26.81000 -26.56549 -25.09827 -23.25847 -22.95633 -21.64055 -21.40937 -20.58584 -19.23969 -18.81651 -18.58390 -17.95478 -17.73928 -17.67536 -17.50174 -17.15392 -17.02313 -16.22549 -16.07998 -15.98469 -15.79552 -15.32022 -15.26494 -15.12113 -14.74620 -14.54884 -14.13916 -14.03273 -13.78916 -13.74432 -13.48472 -13.35135 -13.23999 -13.02468 -12.79547 -12.66163 -12.35643 -12.25359 -11.89424 -11.81057 -11.67834 -11.43135 -11.36628 -11.17582 -11.04883 -10.89146 -10.16929 -9.99909 -9.69790 -5.04643 -0.50360 0.03013 1.16408 1.20767 1.59562 1.62403 1.78780 1.94255 2.10208 2.59510 2.99642 3.25328 3.34148 3.54692 3.56958 3.61882 3.69877 3.76686 3.88194 3.90405 4.00622 4.09778 4.18971 4.25768 4.27186 4.32005 4.34895 4.53175 4.59430 4.67176 4.70851 4.73436 4.80159 4.83171 4.90121 4.92553 4.98104 5.02236 5.08772 5.12814 5.14387 5.27101 5.36839 5.44364 5.59626 5.66630 6.48149 6.60904 6.70170 7.14179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.370 6.370 3 C 0.455 3.545 4 O -0.544 6.544 5 C -0.111 4.111 6 C -0.091 4.091 7 C -0.098 4.098 8 H 0.108 0.892 9 C -0.132 4.132 10 C 0.113 3.887 11 H 0.099 0.901 12 N -0.701 5.701 13 C 0.559 3.441 14 O -0.576 6.576 15 C -0.151 4.151 16 C -0.028 4.028 17 C -0.157 4.157 18 C -0.071 4.071 19 O -0.551 6.551 20 Si 0.762 3.238 21 C 0.104 3.896 22 F -0.131 7.131 23 C -0.146 4.146 24 C -0.045 4.045 25 C -0.148 4.148 26 H 0.126 0.874 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.415 0.585 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.397 0.603 39 H -0.256 1.256 40 H -0.304 1.304 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.091 0.909 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 1.009 -3.921 5.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.300 3.700 4 O -0.434 6.434 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.117 4.117 8 H 0.126 0.874 9 C -0.170 4.170 10 C 0.009 3.991 11 H 0.117 0.883 12 N -0.352 5.352 13 C 0.348 3.652 14 O -0.457 6.457 15 C -0.154 4.154 16 C -0.047 4.047 17 C -0.159 4.159 18 C -0.180 4.180 19 O -0.359 6.359 20 Si 0.666 3.334 21 C 0.085 3.915 22 F -0.110 7.110 23 C -0.165 4.165 24 C -0.063 4.063 25 C -0.186 4.186 26 H 0.145 0.855 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.254 0.746 36 H 0.161 0.839 37 H 0.131 0.869 38 H 0.247 0.753 39 H -0.181 1.181 40 H -0.232 1.232 41 H 0.187 0.813 42 H 0.190 0.810 43 H 0.109 0.891 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.621 1.103 -3.036 4.852 hybrid contribution -0.674 -0.109 0.834 1.078 sum -4.295 0.994 -2.202 4.928 Atomic orbital electron populations 1.23484 0.75269 1.05458 1.02338 1.86522 1.24677 1.33642 1.83756 1.24616 0.93627 0.80785 0.70929 1.90667 1.68391 1.37381 1.46998 1.21575 0.84773 1.00701 1.07719 1.21323 0.94583 0.93645 1.03275 1.22323 0.93992 0.97904 0.97477 0.87378 1.23384 0.96726 0.97500 0.99344 1.22600 0.97719 0.88964 0.89831 0.88262 1.45829 1.15540 1.32208 1.41639 1.18388 0.82201 0.83955 0.80681 1.90793 1.47848 1.41393 1.65662 1.20012 0.96439 0.98359 1.00616 1.20901 0.96247 0.95562 0.92026 1.20271 0.97476 0.96743 1.01372 1.25076 0.87404 1.08154 0.97408 1.86477 1.62399 1.56438 1.30577 0.94341 0.75671 0.74137 0.89219 1.18015 0.95605 0.87397 0.90507 1.91554 1.93369 1.61244 1.64797 1.21390 0.95682 1.01586 0.97794 1.21485 0.99179 0.90979 0.94699 1.23586 0.98061 0.99380 0.97602 0.85545 0.92172 0.92108 0.85524 0.86009 0.91497 0.91329 0.89973 0.88188 0.74642 0.83903 0.86867 0.75272 1.18141 1.23201 0.81258 0.81033 0.89085 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.75 10.57 -51.47 -0.54 -1.29 16 3 C 0.46 1.01 7.96 71.24 0.57 1.58 16 4 O -0.54 -4.74 15.73 21.98 0.35 -4.40 16 5 C -0.11 0.62 5.80 29.85 0.17 0.79 16 6 C -0.09 0.50 4.34 30.59 0.13 0.64 16 7 C -0.10 0.76 3.65 -10.26 -0.04 0.72 16 8 H 0.11 -0.98 8.13 -2.39 -0.02 -1.00 16 9 C -0.13 1.03 7.39 31.12 0.23 1.26 16 10 C 0.11 -0.43 4.24 45.52 0.19 -0.24 16 11 H 0.10 0.06 7.47 -2.39 -0.02 0.04 16 12 N -0.70 2.91 5.30 -443.03 -2.35 0.56 16 13 C 0.56 1.45 7.77 86.75 0.67 2.13 16 14 O -0.58 -6.59 15.94 -3.92 -0.06 -6.65 16 15 C -0.15 0.08 5.87 -20.08 -0.12 -0.04 16 16 C -0.03 -0.05 8.78 22.52 0.20 0.15 16 17 C -0.16 -0.11 5.13 -19.86 -0.10 -0.22 16 18 C -0.07 -0.09 2.96 71.24 0.21 0.12 16 19 O -0.55 -1.04 11.64 -148.98 -1.73 -2.78 16 20 Si 0.76 0.16 30.81 68.60 2.11 2.27 16 21 C 0.10 -0.01 6.67 22.47 0.15 0.14 16 22 F -0.13 -0.40 12.82 44.97 0.58 0.18 16 23 C -0.15 0.74 10.01 22.28 0.22 0.96 16 24 C -0.05 0.30 9.54 22.52 0.21 0.51 16 25 C -0.15 0.81 7.43 31.12 0.23 1.04 16 26 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 28 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 29 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 30 H 0.12 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H 0.07 -0.25 7.81 -2.39 -0.02 -0.27 16 32 H 0.07 -0.24 8.10 -2.38 -0.02 -0.26 16 33 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H 0.10 -0.98 8.08 -2.39 -0.02 -1.00 16 35 H 0.41 -4.39 6.76 -92.70 -0.63 -5.02 16 36 H 0.14 0.57 6.67 -2.91 -0.02 0.55 16 37 H 0.11 0.30 7.96 -2.39 -0.02 0.28 16 38 H 0.40 -2.38 8.44 -74.05 -0.63 -3.01 16 39 H -0.26 -1.15 5.27 99.48 0.52 -0.63 16 40 H -0.30 -2.32 7.11 99.48 0.71 -1.62 16 41 H 0.17 -1.65 8.06 -2.91 -0.02 -1.67 16 42 H 0.17 -2.42 6.40 -2.91 -0.02 -2.44 16 43 H 0.09 -0.56 7.90 -2.38 -0.02 -0.58 16 44 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: 0.00 -24.30 372.03 2.13 -22.16 By element: Atomic # 1 Polarization: -20.41 SS G_CDS: -0.35 Total: -20.76 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 4.14 Total: 10.70 kcal Atomic # 7 Polarization: 2.91 SS G_CDS: -2.35 Total: 0.56 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.99 Total: -15.12 kcal Atomic # 9 Polarization: -0.40 SS G_CDS: 0.58 Total: 0.18 kcal Atomic # 14 Polarization: 0.16 SS G_CDS: 2.11 Total: 2.27 kcal Total: -24.30 2.13 -22.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_12496548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.675 kcal (2) G-P(sol) polarization free energy of solvation -24.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.03 seconds