Wall clock time and date at job start Sun Mar 7 2021 01:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 117.00152 * 2 1 4 4 O 1.20822 * 120.00307 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00209 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47349 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47171 * 179.97438 * 6 5 3 8 8 H 1.09001 * 112.84609 * 43.80614 * 7 6 5 9 9 C 1.53781 * 113.61282 * 175.00090 * 7 6 5 10 10 C 1.53781 * 87.07979 * 139.98441 * 9 7 6 11 11 H 1.09001 * 113.61020 * 89.20020 * 10 9 7 12 12 N 1.46499 * 113.61605 * 220.01820 * 10 9 7 13 13 C 1.34776 * 120.00096 * 204.99900 * 12 10 9 14 14 O 1.21623 * 119.99829 * 0.02562 * 13 12 10 15 15 C 1.47288 * 119.99991 * 179.97438 * 13 12 10 16 16 C 1.40373 * 120.04939 * 179.97438 * 15 13 12 17 17 O 1.35676 * 120.13217 * 0.04765 * 16 15 13 18 18 C 1.38319 * 119.72669 * 179.97438 * 16 15 13 19 19 C 1.39565 * 119.81272 * 0.04166 * 18 16 15 20 20 C 1.47571 * 119.95279 * 179.97438 * 19 18 16 21 21 C 1.36104 * 125.94349 * 179.97438 * 20 19 18 22 22 C 1.40795 * 106.73257 * 179.97438 * 21 20 19 23 23 C 1.34839 * 107.05245 * 359.97438 * 22 21 20 24 24 C 1.50698 * 125.65611 * 180.02562 * 23 22 21 25 25 O 1.42905 * 109.46844 * 65.00229 * 24 23 22 26 26 Si 1.86298 * 109.47321 * 185.00263 * 24 23 22 27 27 O 1.34229 * 108.68978 * 359.75986 * 23 22 21 28 28 C 1.39963 * 120.09024 * 0.02562 * 19 18 16 29 29 C 1.36379 * 120.27899 * 359.97408 * 28 19 18 30 30 C 1.53778 * 113.61616 * 272.50063 * 7 6 5 31 31 H 1.09003 * 109.47113 * 59.99631 * 1 2 3 32 32 H 1.08997 * 109.47427 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47160 * 299.99803 * 1 2 3 34 34 H 1.09001 * 109.47280 * 59.99883 * 5 3 2 35 35 H 1.09006 * 109.46964 * 300.00444 * 5 3 2 36 36 H 1.09011 * 109.46759 * 60.00292 * 6 5 3 37 37 H 1.08995 * 109.47080 * 299.99988 * 6 5 3 38 38 H 1.08996 * 113.61440 * 25.43663 * 9 7 6 39 39 H 1.08995 * 113.61644 * 254.53427 * 9 7 6 40 40 H 0.97002 * 119.99754 * 25.00296 * 12 10 9 41 41 H 0.96706 * 114.00047 * 269.92952 * 17 16 15 42 42 H 1.07995 * 120.08699 * 180.32118 * 18 16 15 43 43 H 1.07997 * 126.63330 * 359.97438 * 21 20 19 44 44 H 1.08000 * 126.47454 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46983 * 305.00538 * 24 23 22 46 46 H 0.96698 * 113.99647 * 180.02562 * 25 24 23 47 47 H 1.48504 * 110.00052 * 300.00549 * 26 24 23 48 48 H 1.48501 * 109.99941 * 61.31752 * 26 24 23 49 49 H 1.07997 * 119.85665 * 179.97438 * 28 19 18 50 50 H 1.08003 * 119.91061 * 180.02562 * 29 28 19 51 51 H 1.09002 * 113.60993 * 105.47338 * 30 7 6 52 52 H 1.08994 * 113.61552 * 334.56942 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 6 5.5281 2.8221 -0.0011 8 1 5.9887 2.1200 -0.6961 9 6 6.0698 4.2560 -0.1243 10 6 7.1385 3.8569 0.9069 11 1 8.0410 3.4389 0.4610 12 7 7.4229 4.9032 1.8922 13 6 8.6180 4.9360 2.5143 14 8 9.4606 4.0974 2.2574 15 6 8.9042 5.9882 3.5045 16 6 10.1484 6.0231 4.1534 17 8 11.0908 5.0891 3.8701 18 6 10.4102 7.0145 5.0818 19 6 9.4360 7.9723 5.3675 20 6 9.7118 9.0311 6.3578 21 6 8.8550 10.0217 6.7278 22 6 9.5263 10.7997 7.6903 23 6 10.7468 10.2523 7.8600 24 6 11.8124 10.7555 8.7992 25 8 11.3603 10.6214 10.1482 26 14 13.3688 9.7590 8.5639 27 8 10.8531 9.1813 7.0579 28 6 8.1976 7.9293 4.7168 29 6 7.9355 6.9535 3.8009 30 6 6.1465 2.7934 1.4066 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.9557 0.7809 -0.8908 35 1 3.9564 0.7804 0.8892 36 1 3.6107 3.2363 0.8890 37 1 3.6101 3.2359 -0.8910 38 1 5.3776 5.0168 0.2363 39 1 6.4773 4.4857 -1.1088 40 1 6.7510 5.5722 2.0968 41 1 11.0448 4.3017 4.4297 42 1 11.3673 7.0500 5.5807 43 1 7.8538 10.1803 6.3552 44 1 9.1372 11.6705 8.1969 45 1 12.0174 11.8050 8.5873 46 1 11.9971 10.9271 10.8086 47 1 13.1026 8.3263 8.8496 48 1 13.8667 9.9155 7.1736 49 1 7.4464 8.6721 4.9411 50 1 6.9780 6.9262 3.3021 51 1 6.6159 1.8423 1.6580 52 1 5.4752 3.1543 2.1858 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_12807986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:25:59 Heat of formation + Delta-G solvation = -125.633434 kcal Electronic energy + Delta-G solvation = -35937.571840 eV Core-core repulsion = 30836.760585 eV Total energy + Delta-G solvation = -5100.811254 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.165 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.88815 -41.78181 -41.50877 -40.50747 -39.14612 -38.11023 -37.83745 -37.63064 -35.28245 -34.40994 -33.84995 -32.91444 -31.44351 -30.61799 -29.09639 -27.40451 -26.73037 -26.47775 -24.67936 -24.16221 -23.29025 -22.44777 -21.94432 -21.52106 -21.36225 -20.70874 -19.73330 -18.74889 -18.70323 -18.59946 -18.09790 -17.69292 -17.56066 -17.46232 -17.24718 -16.65692 -16.59322 -16.21176 -16.09902 -16.06835 -15.89205 -15.54815 -15.26470 -14.91291 -14.57897 -14.50996 -14.35108 -14.22478 -14.13862 -14.01532 -13.83226 -13.68651 -13.63336 -13.38913 -13.32046 -13.03192 -12.85892 -12.73111 -12.69631 -12.28165 -12.27669 -12.01912 -11.89731 -11.82143 -11.68984 -11.38812 -11.26118 -11.18513 -10.91898 -10.80654 -10.46808 -10.10967 -10.04134 -9.12890 -5.16017 -0.91029 0.01956 0.51027 1.10949 1.15172 1.29330 1.48354 1.57825 1.77169 1.83213 1.95131 2.05944 2.53400 2.89700 3.18342 3.46976 3.50374 3.53350 3.59291 3.68713 3.70276 3.74207 3.85368 3.86635 3.87869 3.89333 4.09814 4.16087 4.24590 4.25140 4.26001 4.30375 4.33635 4.50113 4.54123 4.57937 4.64960 4.66405 4.69700 4.70538 4.79052 4.79488 4.88605 4.93834 4.95794 4.98750 5.07598 5.09108 5.11762 5.24355 5.33300 5.34535 5.41802 5.43195 5.62140 5.84247 6.45150 6.57884 6.68992 6.80455 7.12899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.544 6.544 5 C -0.110 4.110 6 C -0.090 4.090 7 C -0.097 4.097 8 H 0.107 0.893 9 C -0.133 4.133 10 C 0.113 3.887 11 H 0.095 0.905 12 N -0.702 5.702 13 C 0.556 3.444 14 O -0.564 6.564 15 C -0.177 4.177 16 C 0.162 3.838 17 O -0.495 6.495 18 C -0.161 4.161 19 C 0.023 3.977 20 C -0.005 4.005 21 C -0.166 4.166 22 C -0.174 4.174 23 C -0.031 4.031 24 C -0.035 4.035 25 O -0.559 6.559 26 Si 0.799 3.201 27 O -0.197 6.197 28 C -0.107 4.107 29 C -0.048 4.048 30 C -0.145 4.145 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.414 0.586 41 H 0.409 0.591 42 H 0.124 0.876 43 H 0.190 0.810 44 H 0.178 0.822 45 H 0.130 0.870 46 H 0.414 0.586 47 H -0.310 1.310 48 H -0.298 1.298 49 H 0.174 0.826 50 H 0.177 0.823 51 H 0.068 0.932 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 3.658 2.894 5.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.116 4.116 8 H 0.126 0.874 9 C -0.171 4.171 10 C 0.008 3.992 11 H 0.113 0.887 12 N -0.354 5.354 13 C 0.345 3.655 14 O -0.444 6.444 15 C -0.181 4.181 16 C 0.115 3.885 17 O -0.308 6.308 18 C -0.180 4.180 19 C 0.022 3.978 20 C -0.054 4.054 21 C -0.185 4.185 22 C -0.193 4.193 23 C -0.080 4.080 24 C -0.144 4.144 25 O -0.371 6.371 26 Si 0.706 3.294 27 O -0.096 6.096 28 C -0.125 4.125 29 C -0.066 4.066 30 C -0.183 4.183 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.253 0.747 41 H 0.269 0.731 42 H 0.142 0.858 43 H 0.208 0.792 44 H 0.195 0.805 45 H 0.147 0.853 46 H 0.267 0.733 47 H -0.238 1.238 48 H -0.226 1.226 49 H 0.191 0.809 50 H 0.194 0.806 51 H 0.087 0.913 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.592 2.666 1.539 4.024 hybrid contribution -0.802 -0.088 0.282 0.854 sum -3.394 2.578 1.820 4.635 Atomic orbital electron populations 1.23486 0.75245 1.05463 1.02353 1.86517 1.24695 1.33622 1.83750 1.24589 0.93588 0.80799 0.70945 1.90668 1.68381 1.37373 1.46986 1.21568 0.84839 1.00616 1.07736 1.21321 0.94412 0.93736 1.03322 1.22313 0.94132 0.97691 0.97468 0.87446 1.23393 0.96768 0.97702 0.99211 1.22595 0.97629 0.89065 0.89909 0.88677 1.45817 1.15464 1.32258 1.41825 1.18193 0.82328 0.84077 0.80944 1.90813 1.47302 1.41105 1.65148 1.20574 0.95360 1.00007 1.02147 1.18455 0.87009 0.90675 0.92332 1.84722 1.51896 1.31479 1.62697 1.21497 1.00394 0.96707 0.99380 1.18006 0.95046 0.91291 0.93463 1.20747 0.85419 1.00133 0.99119 1.22324 1.02045 0.94757 0.99374 1.21911 0.93026 1.03616 1.00735 1.22233 0.99469 0.88956 0.97360 1.23896 1.00709 1.06801 0.83021 1.86412 1.48379 1.88495 1.13774 0.94482 0.77530 0.76347 0.81017 1.83955 1.37884 1.42316 1.45486 1.21075 0.95217 1.00234 0.95944 1.21218 0.98866 0.91175 0.95344 1.23571 0.97911 0.99241 0.97597 0.92122 0.85537 0.92135 0.85571 0.85940 0.91388 0.91344 0.88093 0.90226 0.74736 0.73134 0.85844 0.79238 0.80506 0.85309 0.73288 1.23831 1.22570 0.80894 0.80588 0.91273 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.90 10.56 -51.38 -0.54 -1.45 16 3 C 0.46 1.24 7.96 71.24 0.57 1.81 16 4 O -0.54 -5.00 15.73 21.98 0.35 -4.66 16 5 C -0.11 0.54 5.80 29.85 0.17 0.72 16 6 C -0.09 0.42 4.34 30.60 0.13 0.55 16 7 C -0.10 0.62 3.65 -10.27 -0.04 0.58 16 8 H 0.11 -0.82 8.13 -2.39 -0.02 -0.84 16 9 C -0.13 0.77 7.39 31.12 0.23 1.00 16 10 C 0.11 -0.16 4.24 45.52 0.19 0.03 16 11 H 0.10 0.34 7.46 -2.39 -0.02 0.33 16 12 N -0.70 0.88 5.30 -443.43 -2.35 -1.47 16 13 C 0.56 3.64 7.75 86.62 0.67 4.31 16 14 O -0.56 -8.51 14.74 16.89 0.25 -8.26 16 15 C -0.18 -0.77 5.89 -19.97 -0.12 -0.89 16 16 C 0.16 1.37 6.71 22.81 0.15 1.52 16 17 O -0.49 -5.30 11.56 -68.94 -0.80 -6.09 16 18 C -0.16 -1.32 9.65 22.61 0.22 -1.10 16 19 C 0.02 0.11 5.87 -20.08 -0.12 -0.01 16 20 C -0.01 -0.04 7.02 24.24 0.17 0.13 16 21 C -0.17 -0.31 10.26 22.40 0.23 -0.08 16 22 C -0.17 -0.53 10.78 22.11 0.24 -0.29 16 23 C -0.03 -0.19 6.24 24.90 0.16 -0.04 16 24 C -0.03 0.03 2.97 71.24 0.21 0.25 16 25 O -0.56 1.01 12.86 -148.98 -1.92 -0.90 16 26 Si 0.80 0.09 32.11 68.60 2.20 2.29 16 27 O -0.20 -2.11 8.79 -6.01 -0.05 -2.16 16 28 C -0.11 0.25 9.48 22.25 0.21 0.47 16 29 C -0.05 0.16 9.47 22.24 0.21 0.37 16 30 C -0.14 0.60 7.43 31.12 0.23 0.83 16 31 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 32 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 34 H 0.13 -1.06 8.14 -2.39 -0.02 -1.08 16 35 H 0.12 -0.94 8.14 -2.38 -0.02 -0.96 16 36 H 0.07 -0.20 7.80 -2.38 -0.02 -0.22 16 37 H 0.07 -0.17 8.10 -2.39 -0.02 -0.19 16 38 H 0.10 -0.81 8.08 -2.39 -0.02 -0.83 16 39 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.41 -3.30 6.73 -92.71 -0.62 -3.92 16 41 H 0.41 1.38 9.06 -74.05 -0.67 0.71 16 42 H 0.12 1.25 7.89 -2.91 -0.02 1.22 16 43 H 0.19 -1.09 7.24 -2.91 -0.02 -1.11 16 44 H 0.18 -0.31 8.06 -2.91 -0.02 -0.33 16 45 H 0.13 -0.97 7.96 -2.39 -0.02 -0.99 16 46 H 0.41 -5.53 8.74 -74.06 -0.65 -6.18 16 47 H -0.31 -3.12 7.11 99.48 0.71 -2.41 16 48 H -0.30 -2.23 7.11 99.48 0.71 -1.53 16 49 H 0.17 -1.62 6.95 -2.91 -0.02 -1.64 16 50 H 0.18 -2.08 6.38 -2.91 -0.02 -2.10 16 51 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 52 H 0.09 -0.48 7.89 -2.39 -0.02 -0.50 16 Total: 0.00 -36.67 442.79 1.16 -35.52 By element: Atomic # 1 Polarization: -23.25 SS G_CDS: -0.90 Total: -24.15 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 4.92 Total: 11.33 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -2.35 Total: -1.47 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -2.71 Total: -23.52 kcal Atomic # 14 Polarization: 0.09 SS G_CDS: 2.20 Total: 2.29 kcal Total: -36.67 1.16 -35.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_12807986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.117 kcal (2) G-P(sol) polarization free energy of solvation -36.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds