Wall clock time and date at job start Sun Mar 7 2021 01:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99975 * 2 1 4 4 O 1.20827 * 120.00166 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00132 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47163 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46910 * 179.97438 * 6 5 3 8 8 H 1.08999 * 112.85004 * 43.80211 * 7 6 5 9 9 C 1.53777 * 113.60911 * 174.99946 * 7 6 5 10 10 C 1.53782 * 87.08186 * 140.06555 * 9 7 6 11 11 H 1.08997 * 113.61465 * 89.19400 * 10 9 7 12 12 N 1.46497 * 113.61721 * 220.01959 * 10 9 7 13 13 C 1.34773 * 120.00120 * 203.46897 * 12 10 9 14 14 O 1.21572 * 120.00034 * 359.97438 * 13 12 10 15 15 C 1.47673 * 119.99937 * 179.97438 * 13 12 10 16 16 C 1.40002 * 120.45241 * 353.97803 * 15 13 12 17 17 N 1.31307 * 121.37315 * 180.30315 * 16 15 13 18 18 C 1.32825 * 121.89296 * 359.42392 * 17 16 15 19 19 N 1.37152 * 132.96712 * 180.25285 * 18 17 16 20 20 C 1.36951 * 110.11241 * 180.28423 * 19 18 17 21 21 C 1.34172 * 109.95348 * 359.97438 * 20 19 18 22 22 C 1.50695 * 126.60138 * 179.97438 * 21 20 19 23 23 O 1.42900 * 109.47102 * 105.02487 * 22 21 20 24 24 Si 1.86306 * 109.47153 * 345.03155 * 22 21 20 25 25 C 1.41016 * 120.07849 * 0.56768 * 18 17 16 26 26 C 1.39288 * 119.62261 * 359.72539 * 25 18 17 27 27 C 1.50693 * 121.03153 * 179.97438 * 26 25 18 28 28 C 1.53788 * 87.17038 * 334.60711 * 10 9 7 29 29 H 1.09001 * 109.47149 * 300.00205 * 1 2 3 30 30 H 1.09002 * 109.46989 * 60.00555 * 1 2 3 31 31 H 1.09002 * 109.46535 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47433 * 59.99436 * 5 3 2 33 33 H 1.09003 * 109.46272 * 299.99590 * 5 3 2 34 34 H 1.08999 * 109.46926 * 59.99607 * 6 5 3 35 35 H 1.09002 * 109.46888 * 299.99749 * 6 5 3 36 36 H 1.08997 * 113.62042 * 25.51219 * 9 7 6 37 37 H 1.09005 * 113.61360 * 254.61097 * 9 7 6 38 38 H 0.97006 * 120.00089 * 23.46137 * 12 10 9 39 39 H 1.08002 * 119.31349 * 0.02562 * 16 15 13 40 40 H 0.97001 * 124.94494 * 0.23924 * 19 18 17 41 41 H 1.07997 * 125.02053 * 180.02562 * 20 19 18 42 42 H 1.08997 * 109.47670 * 225.02998 * 22 21 20 43 43 H 0.96699 * 114.00678 * 300.00822 * 23 22 21 44 44 H 1.48502 * 109.99879 * 58.67354 * 24 22 21 45 45 H 1.48502 * 110.00097 * 179.97438 * 24 22 21 46 46 H 1.08995 * 109.47628 * 263.72750 * 27 26 25 47 47 H 1.09003 * 109.47327 * 23.73209 * 27 26 25 48 48 H 1.09011 * 109.47002 * 143.72634 * 27 26 25 49 49 H 1.08994 * 113.61356 * 139.93929 * 28 10 9 50 50 H 1.09000 * 113.61355 * 270.84048 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7422 -0.0011 7 6 5.5281 2.8222 -0.0011 8 1 5.9887 2.1202 -0.6960 9 6 6.0697 4.2562 -0.1244 10 6 7.1397 3.8566 0.9053 11 1 8.0415 3.4387 0.4580 12 7 7.4254 4.9023 1.8907 13 6 8.6098 4.9168 2.5338 14 8 9.4408 4.0618 2.2965 15 6 8.8980 5.9713 3.5266 16 6 8.0026 7.0306 3.7169 17 7 8.2436 7.9809 4.5904 18 6 9.3379 7.9810 5.3432 19 7 9.8083 8.8342 6.3086 20 6 11.0099 8.3856 6.7885 21 6 11.3560 7.2485 6.1660 22 6 12.6039 6.4380 6.4035 23 8 12.2747 5.2638 7.1486 24 14 13.8334 7.4575 7.3627 25 6 10.2878 6.9474 5.2096 26 6 10.0684 5.9255 4.2889 27 6 11.0626 4.8058 4.1195 28 6 6.1503 2.7914 1.4068 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 3.9558 0.7810 -0.8907 33 1 3.9563 0.7807 0.8892 34 1 3.6107 3.2365 0.8889 35 1 3.6101 3.2360 -0.8911 36 1 5.3780 5.0169 0.2375 37 1 6.4759 4.4863 -1.1094 38 1 6.7623 5.5844 2.0802 39 1 7.0969 7.0694 3.1297 40 1 9.3561 9.6386 6.6073 41 1 11.5924 8.8743 7.5555 42 1 13.0385 6.1508 5.4461 43 1 11.8824 5.4441 8.0139 44 1 13.2413 7.8821 8.6567 45 1 15.0685 6.6691 7.6041 46 1 11.7243 5.0308 3.2832 47 1 11.6514 4.7017 5.0309 48 1 10.5311 3.8748 3.9220 49 1 6.6215 1.8408 1.6562 50 1 5.4807 3.1509 2.1881 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14475074_12890568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:26:11 Heat of formation + Delta-G solvation = -58.354085 kcal Electronic energy + Delta-G solvation = -33194.516791 eV Core-core repulsion = 28575.824072 eV Total energy + Delta-G solvation = -4618.692719 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.83488 -41.50507 -41.12763 -39.80365 -38.57510 -37.84678 -37.50858 -35.41232 -34.75571 -33.44328 -31.93086 -30.93350 -29.12506 -28.73009 -27.01321 -26.72719 -26.37769 -24.77749 -24.05523 -22.96009 -21.76393 -21.41784 -20.83716 -20.58033 -19.28395 -18.67467 -18.52663 -17.71111 -17.62667 -17.54396 -17.46839 -17.11908 -16.67273 -16.46342 -16.19716 -15.97623 -15.64410 -15.55897 -15.32055 -15.15275 -14.69335 -14.55205 -14.15948 -14.05363 -13.91921 -13.83636 -13.67166 -13.51884 -13.49582 -13.34312 -13.16829 -13.07459 -12.97583 -12.68116 -12.43291 -12.34682 -11.96626 -11.83919 -11.75281 -11.66707 -11.34929 -11.25672 -11.07493 -11.03654 -10.50628 -10.19081 -10.00014 -9.56905 -9.13844 -5.00749 -0.20956 -0.03910 1.23193 1.25059 1.38242 1.50258 1.61468 1.75590 1.92464 1.95743 2.17577 2.87158 3.28425 3.38090 3.42430 3.45752 3.51332 3.59461 3.67555 3.74954 3.76871 3.79343 3.84295 4.06059 4.10314 4.14252 4.17988 4.24277 4.26368 4.28925 4.41466 4.50962 4.54219 4.61062 4.64438 4.67270 4.68711 4.76535 4.78638 4.84044 4.97728 4.99385 5.04047 5.08826 5.14458 5.21216 5.31220 5.43885 5.45485 5.54210 5.63852 5.79885 6.10293 6.43875 6.52673 6.78068 6.87046 7.28907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.458 3.542 4 O -0.508 6.508 5 C -0.114 4.114 6 C -0.097 4.097 7 C -0.108 4.108 8 H 0.099 0.901 9 C -0.141 4.141 10 C 0.124 3.876 11 H 0.117 0.883 12 N -0.719 5.719 13 C 0.572 3.428 14 O -0.530 6.530 15 C -0.234 4.234 16 C 0.181 3.819 17 N -0.504 5.504 18 C 0.307 3.693 19 N -0.570 5.570 20 C 0.067 3.933 21 C -0.176 4.176 22 C -0.044 4.044 23 O -0.527 6.527 24 Si 0.686 3.314 25 C -0.149 4.149 26 C 0.086 3.914 27 C -0.133 4.133 28 C -0.150 4.150 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.399 0.601 39 H 0.162 0.838 40 H 0.425 0.575 41 H 0.183 0.817 42 H 0.119 0.881 43 H 0.375 0.625 44 H -0.258 1.258 45 H -0.254 1.254 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.098 0.902 49 H 0.075 0.925 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 2.403 0.473 2.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.396 6.396 5 C -0.151 4.151 6 C -0.134 4.134 7 C -0.127 4.127 8 H 0.117 0.883 9 C -0.179 4.179 10 C 0.020 3.980 11 H 0.135 0.865 12 N -0.370 5.370 13 C 0.361 3.639 14 O -0.407 6.407 15 C -0.242 4.242 16 C 0.012 3.988 17 N -0.217 5.217 18 C 0.074 3.926 19 N -0.175 5.175 20 C -0.060 4.060 21 C -0.184 4.184 22 C -0.154 4.154 23 O -0.333 6.333 24 Si 0.586 3.414 25 C -0.156 4.156 26 C 0.077 3.923 27 C -0.189 4.189 28 C -0.189 4.189 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.235 0.765 39 H 0.179 0.821 40 H 0.264 0.736 41 H 0.200 0.800 42 H 0.137 0.863 43 H 0.222 0.778 44 H -0.183 1.183 45 H -0.178 1.178 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.116 0.884 49 H 0.093 0.907 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.555 2.694 0.739 2.849 hybrid contribution -1.247 -0.382 0.807 1.534 sum -0.692 2.312 1.547 2.867 Atomic orbital electron populations 1.23301 0.76007 1.03934 1.02667 1.86515 1.23747 1.33575 1.84015 1.23935 0.92439 0.81329 0.72188 1.90689 1.67383 1.36360 1.45137 1.21449 0.87146 1.00378 1.06147 1.21399 0.94275 0.93719 1.04030 1.22412 0.94685 0.97617 0.98011 0.88320 1.23398 0.97543 0.97196 0.99771 1.22521 0.97821 0.88485 0.89209 0.86482 1.45901 1.17422 1.31385 1.42294 1.17903 0.81661 0.84084 0.80299 1.90752 1.46364 1.39196 1.64401 1.20464 0.98991 1.00339 1.04370 1.22508 0.97023 0.87253 0.92027 1.66437 1.19287 1.28029 1.07968 1.18503 0.91792 0.90339 0.91947 1.41513 1.19117 1.23997 1.32899 1.21794 0.87238 0.96438 1.00481 1.20614 0.98607 0.98198 1.01008 1.24411 0.97961 0.90987 1.02077 1.86618 1.83237 1.30062 1.33398 0.95126 0.78811 0.85752 0.81705 1.19468 0.97367 0.97287 1.01445 1.19928 0.92231 0.92373 0.87747 1.21270 0.97743 0.96791 1.03097 1.23632 0.98385 1.00030 0.96843 0.91806 0.91776 0.87916 0.87445 0.87473 0.90716 0.90560 0.89281 0.90329 0.76541 0.82114 0.73607 0.79982 0.86324 0.77778 1.18278 1.17808 0.89944 0.89893 0.88386 0.90663 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.54 10.57 -39.26 -0.41 -0.95 16 3 C 0.46 0.73 7.96 36.01 0.29 1.02 16 4 O -0.51 -2.32 15.73 -18.75 -0.29 -2.62 16 5 C -0.11 0.21 5.80 -27.88 -0.16 0.04 16 6 C -0.10 0.17 4.35 -26.73 -0.12 0.05 16 7 C -0.11 0.29 3.65 -89.72 -0.33 -0.04 16 8 H 0.10 -0.32 8.13 -51.93 -0.42 -0.74 16 9 C -0.14 0.36 7.39 -25.92 -0.19 0.17 16 10 C 0.12 -0.12 4.21 -67.12 -0.28 -0.40 16 11 H 0.12 0.06 7.50 -51.93 -0.39 -0.33 16 12 N -0.72 0.41 5.31 -54.01 -0.29 0.13 16 13 C 0.57 1.40 7.72 -12.41 -0.10 1.31 16 14 O -0.53 -2.82 13.11 5.30 0.07 -2.76 16 15 C -0.23 -0.54 5.89 -104.82 -0.62 -1.16 16 16 C 0.18 0.19 10.67 -17.12 -0.18 0.01 16 17 N -0.50 -1.33 10.37 -11.96 -0.12 -1.45 16 18 C 0.31 0.69 8.42 -155.71 -1.31 -0.62 16 19 N -0.57 0.50 6.04 -12.12 -0.07 0.42 16 20 C 0.07 -0.13 10.44 -16.70 -0.17 -0.30 16 21 C -0.18 -0.02 5.57 -102.73 -0.57 -0.59 16 22 C -0.04 0.03 1.88 36.00 0.07 0.09 16 23 O -0.53 -0.42 11.67 -35.23 -0.41 -0.83 16 24 Si 0.69 -1.49 30.83 -169.99 -5.24 -6.73 16 25 C -0.15 -0.37 6.16 -105.13 -0.65 -1.02 16 26 C 0.09 0.27 5.98 -103.67 -0.62 -0.35 16 27 C -0.13 -0.40 8.46 36.00 0.30 -0.09 16 28 C -0.15 0.26 7.45 -25.82 -0.19 0.06 16 29 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 30 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 31 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 32 H 0.11 -0.36 8.14 -51.93 -0.42 -0.78 16 33 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 34 H 0.07 -0.06 7.81 -51.93 -0.41 -0.47 16 35 H 0.08 -0.06 8.10 -51.93 -0.42 -0.49 16 36 H 0.09 -0.27 8.07 -51.93 -0.42 -0.69 16 37 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 38 H 0.40 -1.18 6.79 -40.82 -0.28 -1.46 16 39 H 0.16 -0.39 6.43 -52.49 -0.34 -0.73 16 40 H 0.43 -1.43 8.96 -40.82 -0.37 -1.80 16 41 H 0.18 -0.91 6.28 -52.49 -0.33 -1.24 16 42 H 0.12 -0.07 7.13 -51.93 -0.37 -0.44 16 43 H 0.37 -0.78 8.70 45.56 0.40 -0.38 16 44 H -0.26 0.29 7.00 56.52 0.40 0.68 16 45 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.08 0.23 4.79 -51.93 -0.25 -0.02 16 48 H 0.10 0.44 5.96 -51.92 -0.31 0.13 16 49 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 50 H 0.09 -0.14 7.91 -51.93 -0.41 -0.55 16 LS Contribution 407.94 15.07 6.15 6.15 Total: 0.00 -11.04 407.94 -11.29 -22.33 By element: Atomic # 1 Polarization: -6.04 SS G_CDS: -6.89 Total: -12.94 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -3.77 Total: -0.76 kcal Atomic # 7 Polarization: -0.42 SS G_CDS: -0.48 Total: -0.90 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -1.05 Total: -7.15 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: -5.24 Total: -6.73 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -11.04 -11.29 -22.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_12890568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.022 kcal (2) G-P(sol) polarization free energy of solvation -11.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds