Wall clock time and date at job start Sun Mar 7 2021 01:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99975 * 2 1 4 4 O 1.20827 * 120.00166 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00132 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47163 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46910 * 179.97438 * 6 5 3 8 8 H 1.08999 * 112.85004 * 43.80211 * 7 6 5 9 9 C 1.53777 * 113.60911 * 174.99946 * 7 6 5 10 10 C 1.53782 * 87.08186 * 140.06555 * 9 7 6 11 11 H 1.08997 * 113.61465 * 89.19400 * 10 9 7 12 12 N 1.46497 * 113.61721 * 220.01959 * 10 9 7 13 13 C 1.34773 * 120.00120 * 203.46897 * 12 10 9 14 14 O 1.21572 * 120.00034 * 359.97438 * 13 12 10 15 15 C 1.47673 * 119.99937 * 179.97438 * 13 12 10 16 16 C 1.40002 * 120.45241 * 353.97803 * 15 13 12 17 17 N 1.31307 * 121.37315 * 180.30315 * 16 15 13 18 18 C 1.32825 * 121.89296 * 359.42392 * 17 16 15 19 19 N 1.37152 * 132.96712 * 180.25285 * 18 17 16 20 20 C 1.36951 * 110.11241 * 180.28423 * 19 18 17 21 21 C 1.34172 * 109.95348 * 359.97438 * 20 19 18 22 22 C 1.50695 * 126.60138 * 179.97438 * 21 20 19 23 23 O 1.42900 * 109.47102 * 105.02487 * 22 21 20 24 24 Si 1.86306 * 109.47153 * 345.03155 * 22 21 20 25 25 C 1.41016 * 120.07849 * 0.56768 * 18 17 16 26 26 C 1.39288 * 119.62261 * 359.72539 * 25 18 17 27 27 C 1.50693 * 121.03153 * 179.97438 * 26 25 18 28 28 C 1.53788 * 87.17038 * 334.60711 * 10 9 7 29 29 H 1.09001 * 109.47149 * 300.00205 * 1 2 3 30 30 H 1.09002 * 109.46989 * 60.00555 * 1 2 3 31 31 H 1.09002 * 109.46535 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47433 * 59.99436 * 5 3 2 33 33 H 1.09003 * 109.46272 * 299.99590 * 5 3 2 34 34 H 1.08999 * 109.46926 * 59.99607 * 6 5 3 35 35 H 1.09002 * 109.46888 * 299.99749 * 6 5 3 36 36 H 1.08997 * 113.62042 * 25.51219 * 9 7 6 37 37 H 1.09005 * 113.61360 * 254.61097 * 9 7 6 38 38 H 0.97006 * 120.00089 * 23.46137 * 12 10 9 39 39 H 1.08002 * 119.31349 * 0.02562 * 16 15 13 40 40 H 0.97001 * 124.94494 * 0.23924 * 19 18 17 41 41 H 1.07997 * 125.02053 * 180.02562 * 20 19 18 42 42 H 1.08997 * 109.47670 * 225.02998 * 22 21 20 43 43 H 0.96699 * 114.00678 * 300.00822 * 23 22 21 44 44 H 1.48502 * 109.99879 * 58.67354 * 24 22 21 45 45 H 1.48502 * 110.00097 * 179.97438 * 24 22 21 46 46 H 1.08995 * 109.47628 * 263.72750 * 27 26 25 47 47 H 1.09003 * 109.47327 * 23.73209 * 27 26 25 48 48 H 1.09011 * 109.47002 * 143.72634 * 27 26 25 49 49 H 1.08994 * 113.61356 * 139.93929 * 28 10 9 50 50 H 1.09000 * 113.61355 * 270.84048 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7422 -0.0011 7 6 5.5281 2.8222 -0.0011 8 1 5.9887 2.1202 -0.6960 9 6 6.0697 4.2562 -0.1244 10 6 7.1397 3.8566 0.9053 11 1 8.0415 3.4387 0.4580 12 7 7.4254 4.9023 1.8907 13 6 8.6098 4.9168 2.5338 14 8 9.4408 4.0618 2.2965 15 6 8.8980 5.9713 3.5266 16 6 8.0026 7.0306 3.7169 17 7 8.2436 7.9809 4.5904 18 6 9.3379 7.9810 5.3432 19 7 9.8083 8.8342 6.3086 20 6 11.0099 8.3856 6.7885 21 6 11.3560 7.2485 6.1660 22 6 12.6039 6.4380 6.4035 23 8 12.2747 5.2638 7.1486 24 14 13.8334 7.4575 7.3627 25 6 10.2878 6.9474 5.2096 26 6 10.0684 5.9255 4.2889 27 6 11.0626 4.8058 4.1195 28 6 6.1503 2.7914 1.4068 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 3.9558 0.7810 -0.8907 33 1 3.9563 0.7807 0.8892 34 1 3.6107 3.2365 0.8889 35 1 3.6101 3.2360 -0.8911 36 1 5.3780 5.0169 0.2375 37 1 6.4759 4.4863 -1.1094 38 1 6.7623 5.5844 2.0802 39 1 7.0969 7.0694 3.1297 40 1 9.3561 9.6386 6.6073 41 1 11.5924 8.8743 7.5555 42 1 13.0385 6.1508 5.4461 43 1 11.8824 5.4441 8.0139 44 1 13.2413 7.8821 8.6567 45 1 15.0685 6.6691 7.6041 46 1 11.7243 5.0308 3.2832 47 1 11.6514 4.7017 5.0309 48 1 10.5311 3.8748 3.9220 49 1 6.6215 1.8408 1.6562 50 1 5.4807 3.1509 2.1881 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_12890568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:26:08 Heat of formation + Delta-G solvation = -58.928883 kcal Electronic energy + Delta-G solvation = -33194.541717 eV Core-core repulsion = 28575.824072 eV Total energy + Delta-G solvation = -4618.717644 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 6.53 seconds Orbital eigenvalues (eV) -42.85978 -41.57540 -41.20121 -39.79162 -38.64690 -37.84844 -37.62570 -35.47322 -34.86156 -33.43174 -31.93562 -30.97575 -29.13052 -28.85070 -26.95751 -26.61231 -26.33126 -24.83390 -24.10079 -22.97157 -21.84586 -21.43349 -20.77714 -20.50928 -19.32770 -18.70932 -18.59967 -17.72271 -17.68336 -17.56617 -17.49893 -17.13717 -16.72431 -16.46673 -16.15318 -16.02780 -15.64383 -15.53738 -15.31806 -15.19218 -14.70648 -14.55693 -14.23526 -14.05280 -14.01264 -13.81294 -13.71670 -13.59489 -13.36210 -13.34917 -13.23023 -13.16322 -12.99246 -12.63341 -12.45436 -12.24281 -11.87903 -11.82165 -11.78049 -11.67687 -11.35449 -11.21027 -11.15763 -11.10591 -10.57564 -10.27454 -10.05836 -9.61725 -9.13591 -4.83619 -0.34750 -0.08573 1.15763 1.35616 1.41831 1.62621 1.68176 1.78055 1.80056 2.05121 2.13970 2.75486 3.30673 3.44391 3.53539 3.55553 3.57374 3.63946 3.70018 3.72206 3.78650 3.88456 3.91303 4.13685 4.18482 4.25152 4.25823 4.27711 4.30330 4.31675 4.50427 4.55927 4.60304 4.66547 4.69551 4.70242 4.73164 4.78573 4.83333 4.91667 4.97406 5.00210 5.10286 5.13442 5.20088 5.26380 5.28172 5.35325 5.40309 5.47748 5.66960 5.73320 6.21362 6.50649 6.59516 6.69612 6.82488 7.18819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.544 6.544 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.097 4.097 8 H 0.109 0.891 9 C -0.132 4.132 10 C 0.116 3.884 11 H 0.100 0.900 12 N -0.705 5.705 13 C 0.570 3.430 14 O -0.566 6.566 15 C -0.242 4.242 16 C 0.179 3.821 17 N -0.517 5.517 18 C 0.288 3.712 19 N -0.560 5.560 20 C 0.091 3.909 21 C -0.197 4.197 22 C -0.059 4.059 23 O -0.550 6.550 24 Si 0.780 3.220 25 C -0.165 4.165 26 C 0.062 3.938 27 C -0.121 4.121 28 C -0.148 4.148 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.412 0.588 39 H 0.192 0.808 40 H 0.438 0.562 41 H 0.221 0.779 42 H 0.110 0.890 43 H 0.385 0.615 44 H -0.259 1.259 45 H -0.308 1.308 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 3.609 1.026 3.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.435 6.435 5 C -0.147 4.147 6 C -0.129 4.129 7 C -0.115 4.115 8 H 0.127 0.873 9 C -0.170 4.170 10 C 0.012 3.988 11 H 0.118 0.882 12 N -0.356 5.356 13 C 0.358 3.642 14 O -0.447 6.447 15 C -0.249 4.249 16 C 0.011 3.989 17 N -0.230 5.230 18 C 0.054 3.946 19 N -0.167 5.167 20 C -0.036 4.036 21 C -0.204 4.204 22 C -0.167 4.167 23 O -0.358 6.358 24 Si 0.682 3.318 25 C -0.172 4.172 26 C 0.054 3.946 27 C -0.177 4.177 28 C -0.186 4.186 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.250 0.750 39 H 0.209 0.791 40 H 0.279 0.721 41 H 0.237 0.763 42 H 0.127 0.873 43 H 0.234 0.766 44 H -0.184 1.184 45 H -0.236 1.236 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.114 3.922 1.282 4.128 hybrid contribution -1.137 -0.809 0.643 1.536 sum -1.022 3.112 1.924 3.799 Atomic orbital electron populations 1.23489 0.75262 1.05473 1.02331 1.86519 1.24684 1.33604 1.83755 1.24610 0.93615 0.80794 0.70927 1.90670 1.68390 1.37401 1.47004 1.21571 0.84793 1.00621 1.07744 1.21323 0.94602 0.93711 1.03222 1.22345 0.93965 0.97812 0.97425 0.87255 1.23379 0.96776 0.97544 0.99343 1.22583 0.97679 0.88864 0.89722 0.88191 1.45824 1.16698 1.31560 1.41497 1.18029 0.82058 0.83728 0.80366 1.90732 1.47695 1.40563 1.65686 1.20553 0.99231 1.00777 1.04356 1.22943 0.97641 0.86419 0.91906 1.66508 1.19609 1.28455 1.08432 1.18780 0.91891 0.91127 0.92817 1.41605 1.19232 1.23938 1.31882 1.22331 0.86421 0.95253 0.99614 1.20713 0.98709 0.99406 1.01562 1.24745 0.98532 0.91063 1.02351 1.86583 1.83586 1.31336 1.34314 0.94078 0.74233 0.83772 0.79689 1.19751 0.98486 0.97211 1.01762 1.20071 0.92779 0.92887 0.88898 1.21088 0.97569 0.96267 1.02769 1.23609 0.98080 0.99397 0.97541 0.92207 0.92099 0.85493 0.85435 0.86020 0.91650 0.91297 0.88367 0.89925 0.75038 0.79100 0.72059 0.76297 0.87252 0.76560 1.18398 1.23583 0.90415 0.89971 0.90214 0.91264 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.11 10.57 -51.42 -0.54 -1.66 16 3 C 0.46 1.57 7.96 71.24 0.57 2.13 16 4 O -0.54 -5.46 15.73 21.96 0.35 -5.12 16 5 C -0.11 0.47 5.80 29.85 0.17 0.64 16 6 C -0.09 0.34 4.35 30.60 0.13 0.48 16 7 C -0.10 0.57 3.65 -10.21 -0.04 0.53 16 8 H 0.11 -0.83 8.13 -2.39 -0.02 -0.85 16 9 C -0.13 0.74 7.39 31.12 0.23 0.97 16 10 C 0.12 -0.16 4.21 45.52 0.19 0.03 16 11 H 0.10 0.25 7.50 -2.39 -0.02 0.24 16 12 N -0.70 0.37 5.31 -443.07 -2.35 -1.99 16 13 C 0.57 3.75 7.72 86.74 0.67 4.42 16 14 O -0.57 -7.53 13.11 -3.94 -0.05 -7.58 16 15 C -0.24 -1.47 5.89 -19.99 -0.12 -1.59 16 16 C 0.18 0.45 10.67 85.20 0.91 1.35 16 17 N -0.52 -2.75 10.37 -191.75 -1.99 -4.74 16 18 C 0.29 1.30 8.42 134.02 1.13 2.43 16 19 N -0.56 1.66 6.04 -192.26 -1.16 0.50 16 20 C 0.09 -0.49 10.44 82.97 0.87 0.37 16 21 C -0.20 -0.03 5.57 -18.64 -0.10 -0.13 16 22 C -0.06 0.04 1.88 71.23 0.13 0.17 16 23 O -0.55 -1.47 11.67 -148.98 -1.74 -3.21 16 24 Si 0.78 -4.00 30.83 68.60 2.11 -1.88 16 25 C -0.17 -0.97 6.16 -20.19 -0.12 -1.10 16 26 C 0.06 0.51 5.98 -19.25 -0.12 0.40 16 27 C -0.12 -1.08 8.46 71.23 0.60 -0.47 16 28 C -0.15 0.48 7.45 31.18 0.23 0.71 16 29 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 30 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 31 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H 0.06 -0.10 7.81 -2.39 -0.02 -0.12 16 35 H 0.07 -0.13 8.10 -2.39 -0.02 -0.15 16 36 H 0.10 -0.70 8.07 -2.39 -0.02 -0.72 16 37 H 0.08 -0.48 8.14 -2.38 -0.02 -0.50 16 38 H 0.41 -2.52 6.79 -92.70 -0.63 -3.15 16 39 H 0.19 -1.05 6.43 -2.91 -0.02 -1.06 16 40 H 0.44 -3.69 8.96 -92.71 -0.83 -4.52 16 41 H 0.22 -2.95 6.28 -2.91 -0.02 -2.97 16 42 H 0.11 0.06 7.13 -2.39 -0.02 0.04 16 43 H 0.39 -1.41 8.70 -74.06 -0.64 -2.05 16 44 H -0.26 1.26 7.00 99.48 0.70 1.95 16 45 H -0.31 -1.24 7.11 99.48 0.71 -0.53 16 46 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.08 0.68 4.79 -2.39 -0.01 0.67 16 48 H 0.08 0.99 5.96 -2.38 -0.01 0.98 16 49 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.09 -0.29 7.91 -2.39 -0.02 -0.31 16 Total: 0.00 -28.51 407.94 0.11 -28.40 By element: Atomic # 1 Polarization: -14.21 SS G_CDS: -1.05 Total: -15.26 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.53 Total: 12.53 kcal Atomic # 7 Polarization: -0.72 SS G_CDS: -5.50 Total: -6.23 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -1.99 Total: -17.57 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: 2.11 Total: -1.88 kcal Total: -28.51 0.11 -28.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_12890568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.529 kcal (2) G-P(sol) polarization free energy of solvation -28.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.53 seconds