Wall clock time and date at job start Sun Mar 7 2021 01:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 117.00096 * 2 1 4 4 O 1.20825 * 119.99873 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00064 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47229 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47345 * 180.02562 * 6 5 3 8 8 H 1.09003 * 112.90601 * 43.74991 * 7 6 5 9 9 C 1.53781 * 113.61516 * 174.99964 * 7 6 5 10 10 C 1.53776 * 87.08075 * 139.98001 * 9 7 6 11 11 H 1.09004 * 113.61490 * 89.20361 * 10 9 7 12 12 N 1.46500 * 113.61805 * 220.01540 * 10 9 7 13 13 C 1.34779 * 120.00617 * 205.00009 * 12 10 9 14 14 O 1.21592 * 119.99377 * 0.02562 * 13 12 10 15 15 C 1.47536 * 120.00191 * 180.02562 * 13 12 10 16 16 C 1.40139 * 120.18943 * 179.97438 * 15 13 12 17 17 O 1.35652 * 120.14885 * 0.04290 * 16 15 13 18 18 C 1.38710 * 119.69748 * 179.75419 * 16 15 13 19 19 C 1.38054 * 120.08179 * 0.53881 * 18 16 15 20 20 C 1.50693 * 119.80414 * 179.72633 * 19 18 16 21 21 O 1.42907 * 109.47661 * 299.73528 * 20 19 18 22 22 Si 1.86298 * 109.47618 * 179.73218 * 20 19 18 23 23 C 1.38548 * 120.39344 * 359.46092 * 19 18 16 24 24 C 1.37792 * 120.29671 * 0.27005 * 23 19 18 25 25 C 1.53776 * 87.08268 * 334.56809 * 10 9 7 26 26 H 1.09006 * 109.46773 * 60.00633 * 1 2 3 27 27 H 1.09001 * 109.47487 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47740 * 300.00332 * 1 2 3 29 29 H 1.09000 * 109.46999 * 59.99920 * 5 3 2 30 30 H 1.08996 * 109.47402 * 299.99989 * 5 3 2 31 31 H 1.09000 * 109.46993 * 60.00165 * 6 5 3 32 32 H 1.09005 * 109.47152 * 300.00311 * 6 5 3 33 33 H 1.09003 * 113.61380 * 25.43633 * 9 7 6 34 34 H 1.08996 * 113.69281 * 254.54412 * 9 7 6 35 35 H 0.97004 * 119.99705 * 25.01050 * 12 10 9 36 36 H 0.96700 * 113.99954 * 90.00110 * 17 16 15 37 37 H 1.07997 * 119.95896 * 180.29313 * 18 16 15 38 38 H 1.09000 * 109.46936 * 59.73151 * 20 19 18 39 39 H 0.96697 * 114.00527 * 179.97438 * 21 20 19 40 40 H 1.48506 * 109.99834 * 298.68714 * 22 20 19 41 41 H 1.48502 * 110.00011 * 59.99978 * 22 20 19 42 42 H 1.07998 * 119.85276 * 180.28790 * 23 19 18 43 43 H 1.08004 * 120.04521 * 180.02562 * 24 23 19 44 44 H 1.09004 * 113.61529 * 139.98289 * 25 10 9 45 45 H 1.08998 * 113.61773 * 270.88142 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 6 5.5280 2.8221 -0.0002 8 1 5.9896 2.1196 -0.6942 9 6 6.0697 4.2560 -0.1238 10 6 7.1383 3.8572 0.9075 11 1 8.0409 3.4391 0.4617 12 7 7.4228 4.9036 1.8926 13 6 8.6179 4.9367 2.5147 14 8 9.4603 4.0982 2.2580 15 6 8.9041 5.9903 3.5071 16 6 10.1453 6.0281 4.1568 17 8 11.0901 5.0963 3.8755 18 6 10.4053 7.0261 5.0843 19 6 9.4408 7.9706 5.3732 20 6 9.7278 9.0485 6.3865 21 8 10.0111 8.4491 7.6525 22 14 8.2432 10.1628 6.5454 23 6 8.2125 7.9366 4.7332 24 6 7.9392 6.9555 3.8051 25 6 6.1464 2.7938 1.4074 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3635 0.5139 0.8899 29 1 3.9563 0.7805 -0.8891 30 1 3.9557 0.7810 0.8908 31 1 3.6100 3.2367 0.8893 32 1 3.6107 3.2356 -0.8907 33 1 5.3774 5.0169 0.2368 34 1 6.4773 4.4870 -1.1080 35 1 6.7509 5.5727 2.0972 36 1 11.6837 5.3436 3.1532 37 1 11.3621 7.0620 5.5839 38 1 10.5879 9.6335 6.0609 39 1 10.2060 9.0853 8.3541 40 1 7.9574 10.8168 5.2431 41 1 7.0636 9.3771 6.9888 42 1 7.4660 8.6826 4.9625 43 1 6.9804 6.9331 3.3082 44 1 6.6158 1.8428 1.6591 45 1 5.4751 3.1548 2.1866 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_13422076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:27:39 Heat of formation + Delta-G solvation = -145.522850 kcal Electronic energy + Delta-G solvation = -28023.777113 eV Core-core repulsion = 23781.001622 eV Total energy + Delta-G solvation = -4242.775492 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.85081 -41.54426 -40.62768 -39.31424 -38.39164 -37.65422 -37.24406 -35.26928 -33.70415 -32.52010 -31.26873 -29.15506 -27.79900 -26.78168 -26.51176 -24.10714 -23.94853 -22.77288 -21.74312 -21.45220 -20.74455 -19.32613 -18.78363 -18.64598 -18.40627 -17.75531 -17.70595 -17.52988 -16.84884 -16.70184 -16.41650 -16.18480 -15.98977 -15.66149 -15.31524 -15.20873 -14.77618 -14.53888 -14.26782 -14.15445 -13.98703 -13.84751 -13.50517 -13.43196 -13.33311 -13.10275 -13.04862 -12.72665 -12.47414 -12.30360 -12.12744 -11.96101 -11.86295 -11.83209 -11.71116 -11.41836 -11.21897 -10.92398 -10.50702 -10.19203 -10.08110 -9.86760 -4.91535 -0.54441 -0.01335 1.12643 1.27404 1.57260 1.68628 1.74912 1.96315 2.02700 2.43750 2.99182 3.26583 3.46048 3.47968 3.50181 3.61314 3.69132 3.72916 3.82242 3.83837 3.99531 4.12881 4.13701 4.22456 4.23572 4.26607 4.28068 4.49235 4.53237 4.61267 4.63083 4.65776 4.67853 4.74956 4.82607 4.84896 4.91116 4.99216 5.05132 5.07093 5.09921 5.20911 5.31493 5.39672 5.43911 5.58276 6.39604 6.63948 6.66571 6.86981 7.07914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.545 6.545 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.095 4.095 8 H 0.111 0.889 9 C -0.132 4.132 10 C 0.113 3.887 11 H 0.100 0.900 12 N -0.705 5.705 13 C 0.557 3.443 14 O -0.561 6.561 15 C -0.183 4.183 16 C 0.160 3.840 17 O -0.493 6.493 18 C -0.136 4.136 19 C -0.041 4.041 20 C -0.090 4.090 21 O -0.565 6.565 22 Si 0.778 3.222 23 C -0.155 4.155 24 C -0.054 4.054 25 C -0.149 4.149 26 H 0.060 0.940 27 H 0.127 0.873 28 H 0.059 0.941 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.410 0.590 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.406 0.594 40 H -0.279 1.279 41 H -0.294 1.294 42 H 0.136 0.864 43 H 0.163 0.837 44 H 0.068 0.932 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 5.137 0.244 5.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.301 3.699 4 O -0.435 6.435 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.114 4.114 8 H 0.129 0.871 9 C -0.170 4.170 10 C 0.009 3.991 11 H 0.118 0.882 12 N -0.357 5.357 13 C 0.346 3.654 14 O -0.440 6.440 15 C -0.186 4.186 16 C 0.113 3.887 17 O -0.307 6.307 18 C -0.154 4.154 19 C -0.041 4.041 20 C -0.199 4.199 21 O -0.375 6.375 22 Si 0.683 3.317 23 C -0.172 4.172 24 C -0.072 4.072 25 C -0.187 4.187 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.078 0.922 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.249 0.751 36 H 0.270 0.730 37 H 0.164 0.836 38 H 0.119 0.881 39 H 0.258 0.742 40 H -0.205 1.205 41 H -0.221 1.221 42 H 0.153 0.847 43 H 0.181 0.819 44 H 0.087 0.913 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.809 4.136 -0.122 4.516 hybrid contribution -0.009 -0.005 -0.498 0.498 sum -1.818 4.131 -0.620 4.556 Atomic orbital electron populations 1.23492 0.75223 1.05505 1.02338 1.86517 1.24713 1.33561 1.83733 1.24583 0.93577 0.80812 0.70930 1.90668 1.68382 1.37409 1.47021 1.21564 0.84876 1.00542 1.07774 1.21320 0.94476 0.93807 1.03240 1.22313 0.94087 0.97742 0.97256 0.87102 1.23379 0.96686 0.97601 0.99291 1.22621 0.97777 0.88908 0.89816 0.88204 1.45865 1.15575 1.32271 1.41972 1.18241 0.82478 0.84053 0.80677 1.90797 1.47460 1.40676 1.65064 1.20487 0.97104 0.99306 1.01741 1.18746 0.88643 0.87657 0.93626 1.84718 1.45394 1.42451 1.58103 1.21405 1.01606 0.93594 0.98796 1.19860 0.93086 0.95857 0.95340 1.25020 1.12037 0.98050 0.84793 1.86450 1.93328 1.38749 1.19008 0.94058 0.73727 0.80689 0.83232 1.21030 0.96501 1.00363 0.99302 1.21378 0.98819 0.91503 0.95546 1.23587 0.98061 0.99374 0.97701 0.92086 0.85459 0.92202 0.85372 0.86050 0.91693 0.91201 0.88466 0.89816 0.75061 0.72985 0.83612 0.88053 0.74229 1.20548 1.22108 0.84662 0.81919 0.91292 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.15 10.56 -51.42 -0.54 -1.70 16 3 C 0.46 1.63 7.96 71.24 0.57 2.20 16 4 O -0.54 -5.52 15.73 21.97 0.35 -5.17 16 5 C -0.11 0.44 5.80 29.85 0.17 0.62 16 6 C -0.09 0.32 4.34 30.59 0.13 0.45 16 7 C -0.10 0.52 3.65 -10.27 -0.04 0.48 16 8 H 0.11 -0.80 8.13 -2.39 -0.02 -0.82 16 9 C -0.13 0.66 7.39 31.12 0.23 0.89 16 10 C 0.11 -0.04 4.24 45.51 0.19 0.15 16 11 H 0.10 0.37 7.46 -2.38 -0.02 0.35 16 12 N -0.71 -0.48 5.31 -443.20 -2.35 -2.83 16 13 C 0.56 4.42 7.76 86.70 0.67 5.09 16 14 O -0.56 -8.71 14.76 16.91 0.25 -8.46 16 15 C -0.18 -1.11 5.89 -20.01 -0.12 -1.23 16 16 C 0.16 1.25 6.72 22.84 0.15 1.41 16 17 O -0.49 -4.58 11.58 -68.75 -0.80 -5.38 16 18 C -0.14 -0.71 9.53 22.34 0.21 -0.49 16 19 C -0.04 -0.13 5.43 -19.84 -0.11 -0.24 16 20 C -0.09 0.23 2.80 71.23 0.20 0.43 16 21 O -0.57 0.75 12.74 -148.98 -1.90 -1.15 16 22 Si 0.78 -3.83 29.77 68.60 2.04 -1.78 16 23 C -0.15 -0.31 8.64 22.24 0.19 -0.12 16 24 C -0.05 -0.05 9.54 22.52 0.21 0.17 16 25 C -0.15 0.34 7.43 31.12 0.23 0.57 16 26 H 0.06 0.00 8.13 -2.38 -0.02 -0.02 16 27 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 28 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 29 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 30 H 0.12 -0.79 8.14 -2.39 -0.02 -0.81 16 31 H 0.06 -0.08 7.80 -2.39 -0.02 -0.10 16 32 H 0.07 -0.12 8.10 -2.38 -0.02 -0.14 16 33 H 0.10 -0.64 8.08 -2.39 -0.02 -0.66 16 34 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.41 -2.08 6.76 -92.71 -0.63 -2.70 16 36 H 0.41 0.58 9.06 -74.06 -0.67 -0.10 16 37 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 38 H 0.10 -0.70 7.96 -2.39 -0.02 -0.72 16 39 H 0.41 -4.88 8.74 -74.06 -0.65 -5.53 16 40 H -0.28 0.20 7.11 99.48 0.71 0.91 16 41 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 42 H 0.14 -0.04 4.85 -2.91 -0.01 -0.06 16 43 H 0.16 -1.03 6.40 -2.91 -0.02 -1.05 16 44 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.09 -0.21 7.90 -2.39 -0.02 -0.23 16 Total: 0.00 -28.78 378.62 0.30 -28.48 By element: Atomic # 1 Polarization: -12.72 SS G_CDS: -0.86 Total: -13.58 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 4.11 Total: 11.57 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -2.35 Total: -2.83 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -2.64 Total: -21.85 kcal Atomic # 14 Polarization: -3.83 SS G_CDS: 2.04 Total: -1.78 kcal Total: -28.78 0.30 -28.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_13422076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.048 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds