Wall clock time and date at job start Sun Mar 7 2021 01:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00431 * 2 1 4 4 O 1.20828 * 119.99866 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00426 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47303 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46920 * 180.02562 * 6 5 3 8 8 H 1.09003 * 112.91013 * 316.25110 * 7 6 5 9 9 C 1.53779 * 113.61146 * 87.50220 * 7 6 5 10 10 C 1.53785 * 87.08200 * 139.98159 * 9 7 6 11 11 H 1.08994 * 113.69359 * 89.12411 * 10 9 7 12 12 N 1.46501 * 113.61635 * 220.02037 * 10 9 7 13 13 C 1.34769 * 120.00022 * 252.49734 * 12 10 9 14 14 O 1.21699 * 120.00072 * 359.97438 * 13 12 10 15 15 C 1.46681 * 120.00135 * 179.97438 * 13 12 10 16 16 C 1.37869 * 126.23210 * 179.97438 * 15 13 12 17 17 C 1.50701 * 126.45817 * 0.03218 * 16 15 13 18 18 C 1.39841 * 107.08438 * 179.80586 * 16 15 13 19 19 C 1.35452 * 107.86060 * 0.37307 * 18 16 15 20 20 C 1.50701 * 125.56161 * 179.87965 * 19 18 16 21 21 O 1.42896 * 109.47417 * 244.69876 * 20 19 18 22 22 Si 1.86301 * 109.47149 * 4.69892 * 20 19 18 23 23 N 1.35534 * 108.87330 * 359.62056 * 19 18 16 24 24 C 1.53775 * 113.61269 * 184.99672 * 7 6 5 25 25 H 1.09000 * 109.46800 * 299.99647 * 1 2 3 26 26 H 1.08992 * 109.47263 * 59.99215 * 1 2 3 27 27 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46713 * 59.99819 * 5 3 2 29 29 H 1.09002 * 109.47094 * 300.00412 * 5 3 2 30 30 H 1.08996 * 109.47168 * 60.00397 * 6 5 3 31 31 H 1.09002 * 109.47032 * 300.00022 * 6 5 3 32 32 H 1.09004 * 113.62061 * 25.43217 * 9 7 6 33 33 H 1.09006 * 113.61726 * 254.52808 * 9 7 6 34 34 H 0.97001 * 119.99653 * 72.49158 * 12 10 9 35 35 H 1.08998 * 109.46823 * 90.00338 * 17 16 15 36 36 H 1.09000 * 109.47056 * 209.99858 * 17 16 15 37 37 H 1.08994 * 109.47119 * 330.00248 * 17 16 15 38 38 H 1.08002 * 126.06778 * 180.27351 * 18 16 15 39 39 H 1.09002 * 109.47060 * 124.69903 * 20 19 18 40 40 H 0.96699 * 114.00604 * 179.97438 * 21 20 19 41 41 H 1.48498 * 110.00005 * 299.99971 * 22 20 19 42 42 H 1.48501 * 110.00049 * 61.31633 * 22 20 19 43 43 H 0.97005 * 125.67665 * 180.27053 * 23 19 18 44 44 H 1.09008 * 113.61275 * 105.47471 * 24 7 6 45 45 H 1.08999 * 113.69694 * 334.57967 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7419 0.0002 7 6 5.5282 2.8219 -0.0011 8 1 5.9904 2.1193 0.6923 9 6 6.1453 2.7939 -1.4093 10 6 7.1378 3.8571 -0.9100 11 1 8.0407 3.4389 -0.4651 12 7 7.4214 4.9038 -1.8951 13 6 8.6159 4.9370 -2.5182 14 8 9.4592 4.0977 -2.2623 15 6 8.8996 5.9846 -3.5049 16 6 10.0714 6.1399 -4.2145 17 6 11.2965 5.2671 -4.1223 18 6 9.9070 7.2568 -5.0398 19 6 8.6683 7.7581 -4.8185 20 6 8.0775 8.9665 -5.4981 21 8 7.8509 9.9937 -4.5310 22 14 9.2588 9.5873 -6.7981 23 7 8.0447 6.9922 -3.8903 24 6 6.0700 4.2557 0.1223 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 3.9557 0.7808 -0.8908 29 1 3.9565 0.7804 0.8891 30 1 3.6110 3.2355 0.8907 31 1 3.6101 3.2366 -0.8893 32 1 5.4733 3.1552 -2.1879 33 1 6.6145 1.8429 -1.6617 34 1 6.7493 5.5730 -2.0988 35 1 11.2198 4.4557 -4.8461 36 1 12.1838 5.8627 -4.3370 37 1 11.3719 4.8518 -3.1174 38 1 10.6385 7.6507 -5.7298 39 1 7.1320 8.6938 -5.9668 40 1 7.4711 10.8034 -4.8987 41 1 10.5519 9.9624 -6.1719 42 1 9.4780 8.5393 -7.8272 43 1 7.1454 7.1307 -3.5540 44 1 6.4784 4.4850 1.1066 45 1 5.3784 5.0178 -0.2369 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_13940406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:28:19 Heat of formation + Delta-G solvation = -96.076036 kcal Electronic energy + Delta-G solvation = -26655.236730 eV Core-core repulsion = 22640.550216 eV Total energy + Delta-G solvation = -4014.686514 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.73348 -41.58648 -40.94689 -39.40753 -37.68226 -37.63933 -35.42347 -33.84252 -33.29947 -31.76812 -29.16014 -28.36917 -27.45066 -26.73386 -26.28314 -23.71069 -22.24512 -21.75071 -21.43550 -21.07296 -20.27204 -19.39325 -18.64086 -18.48081 -17.71154 -17.54901 -17.28696 -16.89095 -16.52359 -16.26571 -15.78608 -15.48222 -15.33461 -15.14026 -14.90347 -14.68183 -14.43485 -14.14781 -13.96297 -13.86579 -13.74349 -13.45175 -13.40795 -13.38085 -13.11541 -13.06217 -12.74085 -12.57695 -12.31777 -12.03683 -11.95145 -11.84639 -11.73064 -11.43441 -11.24654 -11.10149 -10.46485 -10.22314 -10.01264 -9.32155 -4.95247 0.16920 1.13066 1.18138 1.32846 1.73258 1.74949 1.90861 2.04644 2.10102 2.13194 3.28267 3.46246 3.49077 3.66802 3.72953 3.80074 3.81909 3.82597 3.91917 4.06129 4.13051 4.22723 4.23932 4.28301 4.36592 4.48682 4.50502 4.60187 4.61824 4.66009 4.68343 4.73145 4.74824 4.83923 4.90431 4.98013 5.02378 5.03853 5.16005 5.20183 5.29923 5.38782 5.45050 5.57340 5.66776 6.20374 6.39718 6.66976 6.83775 6.99243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.545 6.545 5 C -0.110 4.110 6 C -0.090 4.090 7 C -0.095 4.095 8 H 0.111 0.889 9 C -0.145 4.145 10 C 0.113 3.887 11 H 0.102 0.898 12 N -0.707 5.707 13 C 0.590 3.410 14 O -0.560 6.560 15 C -0.067 4.067 16 C -0.088 4.088 17 C -0.089 4.089 18 C -0.232 4.232 19 C 0.072 3.928 20 C -0.062 4.062 21 O -0.565 6.565 22 Si 0.811 3.189 23 N -0.508 5.508 24 C -0.133 4.133 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.408 0.592 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.142 0.858 39 H 0.106 0.894 40 H 0.410 0.590 41 H -0.300 1.300 42 H -0.290 1.290 43 H 0.431 0.569 44 H 0.081 0.919 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 2.695 -2.042 6.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.301 3.699 4 O -0.435 6.435 5 C -0.147 4.147 6 C -0.128 4.128 7 C -0.114 4.114 8 H 0.129 0.871 9 C -0.184 4.184 10 C 0.009 3.991 11 H 0.120 0.880 12 N -0.357 5.357 13 C 0.378 3.622 14 O -0.439 6.439 15 C -0.180 4.180 16 C -0.097 4.097 17 C -0.146 4.146 18 C -0.256 4.256 19 C -0.048 4.048 20 C -0.171 4.171 21 O -0.376 6.376 22 Si 0.715 3.285 23 N -0.105 5.105 24 C -0.171 4.171 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.244 0.756 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.159 0.841 39 H 0.124 0.876 40 H 0.262 0.738 41 H -0.228 1.228 42 H -0.217 1.217 43 H 0.272 0.728 44 H 0.100 0.900 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.257 1.804 -1.736 4.939 hybrid contribution -0.972 -0.074 0.378 1.046 sum -5.229 1.730 -1.357 5.673 Atomic orbital electron populations 1.23489 0.75221 1.05499 1.02342 1.86516 1.24709 1.33566 1.83724 1.24586 0.93586 0.80809 0.70929 1.90670 1.68392 1.37410 1.47033 1.21566 0.84863 1.00496 1.07815 1.21315 0.94433 0.93842 1.03226 1.22311 0.94130 0.97558 0.97388 0.87080 1.23574 0.97873 0.99347 0.97599 1.22662 0.97926 0.88810 0.89697 0.88034 1.45797 1.15272 1.32372 1.42299 1.17112 0.82437 0.82912 0.79696 1.90807 1.47330 1.40297 1.65472 1.20210 0.93791 0.97004 1.07019 1.20151 0.95288 0.97454 0.96785 1.20337 0.93368 0.97895 1.03019 1.20629 0.97309 1.01010 1.06673 1.20421 0.93580 0.95463 0.95309 1.24635 1.08607 0.86294 0.97602 1.86431 1.87130 1.27607 1.36401 0.94277 0.76065 0.83690 0.74454 1.41786 1.15364 1.21444 1.31945 1.23392 0.96740 0.97743 0.99274 0.92112 0.92170 0.85474 0.85926 0.85416 0.91312 0.91628 0.89288 0.90973 0.75642 0.91088 0.90862 0.91360 0.84094 0.87580 0.73763 1.22751 1.21739 0.72842 0.90010 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.91 10.56 -51.33 -0.54 -1.46 16 3 C 0.46 1.31 7.96 71.24 0.57 1.88 16 4 O -0.54 -5.15 15.73 21.96 0.35 -4.80 16 5 C -0.11 0.53 5.80 29.85 0.17 0.70 16 6 C -0.09 0.39 4.34 30.59 0.13 0.52 16 7 C -0.10 0.58 3.65 -10.27 -0.04 0.55 16 8 H 0.11 -0.87 8.13 -2.39 -0.02 -0.89 16 9 C -0.15 0.53 7.43 31.12 0.23 0.76 16 10 C 0.11 -0.11 4.24 45.52 0.19 0.08 16 11 H 0.10 0.32 7.46 -2.39 -0.02 0.30 16 12 N -0.71 -0.17 5.35 -443.99 -2.38 -2.55 16 13 C 0.59 4.75 7.79 86.45 0.67 5.43 16 14 O -0.56 -8.45 14.40 -4.35 -0.06 -8.52 16 15 C -0.07 -0.51 7.06 40.35 0.28 -0.22 16 16 C -0.09 -0.90 6.21 -19.56 -0.12 -1.02 16 17 C -0.09 -0.81 9.83 71.24 0.70 -0.11 16 18 C -0.23 -1.86 9.27 22.01 0.20 -1.66 16 19 C 0.07 0.27 6.50 41.34 0.27 0.54 16 20 C -0.06 0.24 3.07 71.24 0.22 0.46 16 21 O -0.56 2.35 12.86 -148.98 -1.92 0.43 16 22 Si 0.81 -3.27 30.56 68.60 2.10 -1.17 16 23 N -0.51 -0.93 5.99 -171.93 -1.03 -1.96 16 24 C -0.13 0.70 7.39 31.12 0.23 0.93 16 25 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 26 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 27 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 28 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 30 H 0.07 -0.15 8.10 -2.39 -0.02 -0.17 16 31 H 0.06 -0.15 7.80 -2.39 -0.02 -0.17 16 32 H 0.09 -0.36 7.90 -2.38 -0.02 -0.38 16 33 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 34 H 0.41 -2.22 7.86 -92.71 -0.73 -2.95 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.07 0.82 6.48 -2.39 -0.02 0.81 16 38 H 0.14 0.99 6.19 -2.91 -0.02 0.97 16 39 H 0.11 -0.99 7.96 -2.39 -0.02 -1.01 16 40 H 0.41 -6.10 8.74 -74.06 -0.65 -6.75 16 41 H -0.30 -1.38 7.11 99.48 0.71 -0.68 16 42 H -0.29 -0.65 7.11 99.48 0.71 0.06 16 43 H 0.43 -2.11 8.19 -92.70 -0.76 -2.87 16 44 H 0.08 -0.42 8.14 -2.38 -0.02 -0.44 16 45 H 0.10 -0.66 8.08 -2.39 -0.02 -0.67 16 Total: 0.00 -27.41 376.90 0.37 -27.04 By element: Atomic # 1 Polarization: -15.96 SS G_CDS: -1.06 Total: -17.02 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 4.91 Total: 10.00 kcal Atomic # 7 Polarization: -1.10 SS G_CDS: -3.41 Total: -4.51 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -2.17 Total: -14.34 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: 2.10 Total: -1.17 kcal Total: -27.41 0.37 -27.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_13940406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.035 kcal (2) G-P(sol) polarization free energy of solvation -27.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds