Wall clock time and date at job start Sun Mar 7 2021 01:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99869 * 2 1 4 4 O 1.20824 * 119.99884 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00192 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47358 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47220 * 180.02562 * 6 5 3 8 8 H 1.09006 * 112.85095 * 43.80036 * 7 6 5 9 9 C 1.53775 * 113.61647 * 175.00275 * 7 6 5 10 10 C 1.53774 * 87.08475 * 139.98283 * 9 7 6 11 11 H 1.09004 * 113.61848 * 89.19835 * 10 9 7 12 12 N 1.46503 * 113.61400 * 220.02156 * 10 9 7 13 13 C 1.34779 * 119.99846 * 205.00063 * 12 10 9 14 14 O 1.21281 * 120.00030 * 359.97438 * 13 12 10 15 15 C 1.50703 * 119.99958 * 179.97438 * 13 12 10 16 16 C 1.50700 * 109.47254 * 179.97438 * 15 13 12 17 17 C 1.34850 * 125.88863 * 275.04251 * 16 15 13 18 18 C 1.40896 * 107.41567 * 179.73060 * 17 16 15 19 19 C 1.34851 * 107.41302 * 0.37880 * 18 17 16 20 20 C 1.50701 * 125.88836 * 179.88177 * 19 18 17 21 21 O 1.42896 * 109.47417 * 244.69282 * 20 19 18 22 22 Si 1.86301 * 109.47149 * 4.69299 * 20 19 18 23 23 N 1.36338 * 125.88930 * 94.99796 * 16 15 13 24 24 C 1.53778 * 87.08213 * 334.56529 * 10 9 7 25 25 H 1.09004 * 109.46654 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46864 * 299.99259 * 1 2 3 27 27 H 1.08988 * 109.47412 * 59.99759 * 1 2 3 28 28 H 1.09001 * 109.46474 * 59.99933 * 5 3 2 29 29 H 1.09007 * 109.47065 * 300.00623 * 5 3 2 30 30 H 1.09000 * 109.46937 * 59.99932 * 6 5 3 31 31 H 1.09003 * 109.46928 * 300.00229 * 6 5 3 32 32 H 1.08998 * 113.61535 * 25.42632 * 9 7 6 33 33 H 1.09008 * 113.61259 * 254.53298 * 9 7 6 34 34 H 0.96995 * 119.99929 * 24.99434 * 12 10 9 35 35 H 1.08999 * 109.46897 * 59.99750 * 15 13 12 36 36 H 1.08994 * 109.47255 * 299.99755 * 15 13 12 37 37 H 1.08001 * 126.29352 * 359.97438 * 17 16 15 38 38 H 1.07996 * 126.29011 * 180.23653 * 18 17 16 39 39 H 1.09002 * 109.47060 * 124.69309 * 20 19 18 40 40 H 0.96708 * 114.00101 * 59.99427 * 21 20 19 41 41 H 1.48494 * 109.99914 * 58.67711 * 22 20 19 42 42 H 1.48493 * 110.00101 * 179.97438 * 22 20 19 43 43 H 0.96995 * 125.63783 * 0.05579 * 23 16 15 44 44 H 1.08997 * 113.61446 * 139.97597 * 24 10 9 45 45 H 1.09002 * 113.62120 * 270.89035 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 0.0002 7 6 5.5279 2.8223 -0.0011 8 1 5.9880 2.1210 -0.6973 9 6 6.0695 4.2563 -0.1231 10 6 7.1391 3.8562 0.9067 11 1 8.0413 3.4386 0.4596 12 7 7.4243 4.9013 1.8929 13 6 8.6200 4.9336 2.5140 14 8 9.4597 4.0972 2.2568 15 6 8.9136 6.0091 3.5281 16 6 10.3069 5.8211 4.0706 17 6 10.6559 5.0084 5.0885 18 6 12.0485 5.1288 5.2659 19 6 12.4960 6.0169 4.3551 20 6 13.9263 6.4577 4.1797 21 8 14.0371 7.8490 4.4864 22 14 15.0224 5.4801 5.3259 23 7 11.4321 6.4428 3.6164 24 6 6.1476 2.7921 1.4061 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8898 28 1 3.9556 0.7810 -0.8909 29 1 3.9564 0.7806 0.8891 30 1 3.6107 3.2356 0.8907 31 1 3.6099 3.2368 -0.8893 32 1 5.3776 5.0167 0.2389 33 1 6.4762 4.4871 -1.1078 34 1 6.7526 5.5701 2.0988 35 1 8.1943 5.9446 4.3446 36 1 8.8372 6.9870 3.0530 37 1 9.9909 4.3778 5.6600 38 1 12.6470 4.6076 5.9983 39 1 14.2352 6.2873 3.1484 40 1 13.7777 8.0744 5.3903 41 1 14.8922 4.0291 5.0383 42 1 16.4358 5.9050 5.1621 43 1 11.4695 7.0825 2.8882 44 1 6.6172 1.8408 1.6560 45 1 5.4769 3.1521 2.1863 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_14644196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:28:25 Heat of formation + Delta-G solvation = -95.474025 kcal Electronic energy + Delta-G solvation = -26108.579687 eV Core-core repulsion = 22093.919278 eV Total energy + Delta-G solvation = -4014.660409 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.33198 -41.57442 -41.00533 -39.45743 -37.69778 -37.63045 -35.15360 -33.59067 -32.72484 -31.92304 -29.55792 -28.96272 -26.86461 -26.57683 -25.23152 -23.33033 -21.88570 -21.42497 -21.35793 -21.12670 -20.50623 -18.91730 -18.63127 -18.07334 -17.69662 -17.52930 -17.36579 -16.68449 -16.35696 -16.32948 -16.12426 -15.45784 -15.20087 -15.10273 -14.61897 -14.54882 -14.28235 -14.18387 -14.05957 -13.84498 -13.80819 -13.66035 -13.38950 -13.25445 -13.03825 -12.78970 -12.63832 -12.27378 -12.11245 -12.00110 -11.90829 -11.82545 -11.70284 -11.38593 -11.18398 -10.91408 -10.63531 -10.00415 -9.79535 -8.96076 -4.96692 1.11556 1.14469 1.26481 1.61023 1.69663 1.76964 1.88468 1.95189 2.34134 2.53824 3.51280 3.52426 3.54051 3.68235 3.72674 3.79864 3.85519 3.86288 4.04444 4.17056 4.21677 4.24389 4.26076 4.30071 4.37892 4.48971 4.53369 4.62239 4.64259 4.69365 4.70707 4.79665 4.80242 4.88259 4.93885 5.07512 5.13747 5.23563 5.25872 5.29411 5.36091 5.44428 5.64597 6.00495 6.13896 6.54796 6.66948 6.68387 6.70866 7.27511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.544 6.544 5 C -0.110 4.110 6 C -0.090 4.090 7 C -0.099 4.099 8 H 0.105 0.895 9 C -0.132 4.132 10 C 0.114 3.886 11 H 0.090 0.910 12 N -0.709 5.709 13 C 0.510 3.490 14 O -0.581 6.581 15 C -0.068 4.068 16 C 0.032 3.968 17 C -0.200 4.200 18 C -0.201 4.201 19 C -0.023 4.023 20 C -0.053 4.053 21 O -0.558 6.558 22 Si 0.810 3.190 23 N -0.538 5.538 24 C -0.145 4.145 25 H 0.127 0.873 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.417 0.583 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.154 0.846 39 H 0.100 0.900 40 H 0.397 0.603 41 H -0.295 1.295 42 H -0.292 1.292 43 H 0.418 0.582 44 H 0.065 0.935 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 1.451 1.950 4.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.118 4.118 8 H 0.123 0.877 9 C -0.170 4.170 10 C 0.009 3.991 11 H 0.108 0.892 12 N -0.360 5.360 13 C 0.297 3.703 14 O -0.460 6.460 15 C -0.108 4.108 16 C -0.082 4.082 17 C -0.224 4.224 18 C -0.225 4.225 19 C -0.136 4.136 20 C -0.162 4.162 21 O -0.366 6.366 22 Si 0.715 3.285 23 N -0.133 5.133 24 C -0.184 4.184 25 H 0.145 0.855 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.255 0.745 35 H 0.162 0.838 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.171 0.829 39 H 0.117 0.883 40 H 0.248 0.752 41 H -0.223 1.223 42 H -0.219 1.219 43 H 0.255 0.745 44 H 0.084 0.916 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.018 0.744 1.099 3.297 hybrid contribution -0.849 0.467 -1.030 1.414 sum -3.867 1.211 0.069 4.052 Atomic orbital electron populations 1.23490 0.75216 1.05490 1.02358 1.86519 1.24720 1.33590 1.83740 1.24579 0.93567 0.80809 0.70944 1.90668 1.68369 1.37391 1.46996 1.21566 0.84879 1.00614 1.07702 1.21315 0.94453 0.93721 1.03269 1.22321 0.94103 0.97777 0.97587 0.87699 1.23369 0.96907 0.97548 0.99193 1.22471 0.97187 0.89368 0.90117 0.89224 1.45916 1.16117 1.32171 1.41839 1.21078 0.81617 0.85877 0.81711 1.90746 1.47920 1.41936 1.65396 1.20261 0.92360 0.99012 0.99155 1.19938 0.88474 1.00612 0.99162 1.20853 0.95890 1.03816 1.01871 1.20924 0.95714 1.03092 1.02807 1.20994 0.90334 1.03605 0.98711 1.24922 0.94806 0.89066 1.07441 1.86441 1.89916 1.22341 1.37873 0.93074 0.74072 0.74562 0.86832 1.41895 1.06234 1.36112 1.29095 1.23558 0.98030 0.99277 0.97486 0.85498 0.92118 0.92129 0.85636 0.85945 0.91382 0.91445 0.88174 0.90487 0.74501 0.83826 0.85476 0.84096 0.82878 0.88293 0.75233 1.22256 1.21926 0.74482 0.91595 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.91 10.57 -51.40 -0.54 -1.45 16 3 C 0.46 1.28 7.96 71.24 0.57 1.85 16 4 O -0.54 -5.06 15.73 21.97 0.35 -4.72 16 5 C -0.11 0.52 5.80 29.85 0.17 0.70 16 6 C -0.09 0.40 4.34 30.59 0.13 0.53 16 7 C -0.10 0.62 3.65 -10.27 -0.04 0.58 16 8 H 0.10 -0.76 8.13 -2.38 -0.02 -0.77 16 9 C -0.13 0.81 7.39 31.12 0.23 1.04 16 10 C 0.11 -0.26 4.24 45.51 0.19 -0.07 16 11 H 0.09 0.29 7.46 -2.38 -0.02 0.28 16 12 N -0.71 2.85 5.35 -440.03 -2.36 0.49 16 13 C 0.51 0.92 7.82 87.66 0.69 1.61 16 14 O -0.58 -7.51 15.63 -3.03 -0.05 -7.55 16 15 C -0.07 0.29 6.24 29.10 0.18 0.47 16 16 C 0.03 0.10 5.66 41.08 0.23 0.33 16 17 C -0.20 -1.06 10.77 22.14 0.24 -0.82 16 18 C -0.20 -0.95 9.37 22.14 0.21 -0.74 16 19 C -0.02 -0.10 6.50 41.08 0.27 0.17 16 20 C -0.05 -0.11 3.08 71.24 0.22 0.11 16 21 O -0.56 -0.64 12.88 -148.98 -1.92 -2.56 16 22 Si 0.81 0.09 30.60 68.60 2.10 2.19 16 23 N -0.54 -1.70 6.07 -171.12 -1.04 -2.74 16 24 C -0.14 0.62 7.43 31.12 0.23 0.85 16 25 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 27 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 28 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 29 H 0.12 -0.92 8.14 -2.38 -0.02 -0.94 16 30 H 0.07 -0.19 7.80 -2.39 -0.02 -0.21 16 31 H 0.07 -0.15 8.10 -2.39 -0.02 -0.17 16 32 H 0.10 -0.81 8.08 -2.39 -0.02 -0.83 16 33 H 0.08 -0.43 8.14 -2.38 -0.02 -0.45 16 34 H 0.42 -4.41 8.73 -92.71 -0.81 -5.22 16 35 H 0.14 -1.38 8.14 -2.39 -0.02 -1.40 16 36 H 0.13 -1.25 8.14 -2.39 -0.02 -1.27 16 37 H 0.14 0.44 8.06 -2.91 -0.02 0.41 16 38 H 0.15 0.13 6.24 -2.91 -0.02 0.11 16 39 H 0.10 0.37 7.96 -2.39 -0.02 0.35 16 40 H 0.40 -2.67 8.70 -74.05 -0.64 -3.32 16 41 H -0.30 -2.00 7.11 99.48 0.71 -1.30 16 42 H -0.29 -1.75 7.11 99.48 0.71 -1.04 16 43 H 0.42 -0.06 8.96 -92.71 -0.83 -0.89 16 44 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.09 -0.50 7.90 -2.39 -0.02 -0.52 16 Total: 0.00 -27.94 381.23 0.04 -27.90 By element: Atomic # 1 Polarization: -18.13 SS G_CDS: -1.22 Total: -19.35 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 4.72 Total: 7.78 kcal Atomic # 7 Polarization: 1.15 SS G_CDS: -3.40 Total: -2.25 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -2.16 Total: -16.28 kcal Atomic # 14 Polarization: 0.09 SS G_CDS: 2.10 Total: 2.19 kcal Total: -27.94 0.04 -27.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_14644196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.569 kcal (2) G-P(sol) polarization free energy of solvation -27.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds