Wall clock time and date at job start Sun Mar 7 2021 01:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47226 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47008 * 180.02562 * 6 5 3 8 8 H 1.09001 * 112.84706 * 43.80759 * 7 6 5 9 9 C 1.53774 * 113.61729 * 175.00210 * 7 6 5 10 10 C 1.53780 * 87.08575 * 139.98079 * 9 7 6 11 11 H 1.08994 * 113.61176 * 89.19784 * 10 9 7 12 12 N 1.46503 * 113.61596 * 220.02168 * 10 9 7 13 13 C 1.34778 * 119.99578 * 204.99803 * 12 10 9 14 14 O 1.21274 * 120.00107 * 0.02562 * 13 12 10 15 15 C 1.50700 * 119.99510 * 179.97438 * 13 12 10 16 16 C 1.53005 * 109.46760 * 180.02562 * 15 13 12 17 17 O 1.42903 * 109.46723 * 180.02562 * 16 15 13 18 18 C 1.35902 * 116.99381 * 180.02562 * 17 16 15 19 19 C 1.38713 * 120.04968 * 179.71989 * 18 17 16 20 20 C 1.38168 * 119.93976 * 179.76189 * 19 18 17 21 21 C 1.50703 * 119.97334 * 180.23270 * 20 19 18 22 22 O 1.42901 * 109.47332 * 300.26093 * 21 20 19 23 23 Si 1.86292 * 109.47545 * 180.25813 * 21 20 19 24 24 C 1.38240 * 120.05723 * 0.49515 * 20 19 18 25 25 C 1.38286 * 120.11276 * 359.75744 * 24 20 19 26 26 C 1.38125 * 120.05487 * 0.02562 * 25 24 20 27 27 C 1.53783 * 87.07974 * 334.56886 * 10 9 7 28 28 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 29 29 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 31 31 H 1.08992 * 109.47018 * 300.00694 * 5 3 2 32 32 H 1.09009 * 109.46602 * 60.00278 * 5 3 2 33 33 H 1.09004 * 109.47407 * 300.00196 * 6 5 3 34 34 H 1.08999 * 109.46965 * 60.00645 * 6 5 3 35 35 H 1.08998 * 113.61738 * 254.53387 * 9 7 6 36 36 H 1.09008 * 113.61576 * 25.43230 * 9 7 6 37 37 H 0.96997 * 120.00092 * 24.99929 * 12 10 9 38 38 H 1.08993 * 109.47448 * 299.99875 * 15 13 12 39 39 H 1.09003 * 109.47203 * 60.00652 * 15 13 12 40 40 H 1.09006 * 109.47102 * 299.99983 * 16 15 13 41 41 H 1.08991 * 109.47443 * 60.00085 * 16 15 13 42 42 H 1.07995 * 120.03329 * 0.02562 * 19 18 17 43 43 H 1.09000 * 109.46871 * 60.25433 * 21 20 19 44 44 H 0.96695 * 114.00676 * 179.97438 * 22 21 20 45 45 H 1.48504 * 109.99887 * 298.68533 * 23 21 20 46 46 H 1.48501 * 109.99968 * 59.99684 * 23 21 20 47 47 H 1.08005 * 119.94514 * 179.74849 * 24 20 19 48 48 H 1.08002 * 119.97645 * 179.97438 * 25 24 20 49 49 H 1.08000 * 120.03234 * 179.97438 * 26 25 24 50 50 H 1.08998 * 113.61519 * 270.88189 * 27 10 9 51 51 H 1.08994 * 113.61682 * 139.97691 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 6 5.5280 2.8223 -0.0002 8 1 5.9886 2.1202 -0.6952 9 6 6.0697 4.2561 -0.1237 10 6 7.1384 3.8574 0.9076 11 1 8.0408 3.4393 0.4617 12 7 7.4227 4.9038 1.8927 13 6 8.6179 4.9368 2.5148 14 8 9.4581 4.1006 2.2587 15 6 8.9106 6.0136 3.5277 16 6 10.3252 5.8241 4.0790 17 8 10.6025 6.8448 5.0400 18 6 11.8268 6.8209 5.6294 19 6 12.1652 7.7854 6.5672 20 6 13.4087 7.7560 7.1686 21 6 13.7752 8.8004 8.1915 22 8 13.7054 10.0969 7.5946 23 14 15.5076 8.4905 8.8024 24 6 14.3191 6.7727 6.8290 25 6 13.9861 5.8132 5.8905 26 6 12.7426 5.8355 5.2896 27 6 6.1464 2.7939 1.4075 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 3.9557 0.7810 0.8907 32 1 3.9564 0.7807 -0.8893 33 1 3.6107 3.2358 -0.8906 34 1 3.6100 3.2368 0.8894 35 1 6.4771 4.4857 -1.1083 36 1 5.3774 5.0171 0.2368 37 1 6.7508 5.5728 2.0972 38 1 8.8346 6.9909 3.0512 39 1 8.1907 5.9501 4.3437 40 1 10.4016 4.8466 4.5554 41 1 11.0448 5.8877 3.2629 42 1 11.4557 8.5560 6.8302 43 1 13.0797 8.7482 9.0292 44 1 13.9289 10.8197 8.1967 45 1 15.5857 7.1582 9.4537 46 1 16.4654 8.5588 7.6696 47 1 15.2922 6.7539 7.2973 48 1 14.6992 5.0463 5.6265 49 1 12.4831 5.0862 4.5564 50 1 5.4751 3.1549 2.1867 51 1 6.6158 1.8429 1.6590 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_4549614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:29:06 Heat of formation + Delta-G solvation = -147.846986 kcal Electronic energy + Delta-G solvation = -30674.436664 eV Core-core repulsion = 26120.485152 eV Total energy + Delta-G solvation = -4553.951512 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.63127 -41.48721 -41.10172 -39.70850 -39.04962 -37.64977 -37.33832 -35.22209 -33.70517 -32.93734 -32.69702 -30.96584 -29.11414 -27.28686 -26.85570 -26.61342 -25.39470 -23.83404 -23.13558 -22.02642 -21.57577 -21.44236 -20.53301 -19.21456 -18.63726 -18.40569 -17.99900 -17.70551 -17.55523 -17.53415 -17.47056 -17.25089 -16.95401 -16.27349 -16.10521 -15.89961 -15.41172 -15.39342 -14.93384 -14.65844 -14.61911 -14.44267 -14.31568 -14.16366 -14.03046 -13.83213 -13.49248 -13.40196 -13.33210 -13.08769 -12.99600 -12.87599 -12.69676 -12.41904 -12.28955 -12.17010 -11.92511 -11.91146 -11.83574 -11.81487 -11.71089 -11.40104 -11.20226 -10.98607 -10.43691 -10.06921 -9.98107 -9.42751 -4.93867 0.04900 0.21069 1.13897 1.27909 1.48077 1.65215 1.66109 1.77528 1.98346 2.46328 2.49543 3.36092 3.49309 3.51702 3.53242 3.68480 3.72179 3.77352 3.80273 3.81737 3.84740 3.87261 3.96938 4.12971 4.14753 4.15875 4.23737 4.24847 4.29150 4.30528 4.38550 4.51815 4.54599 4.62639 4.63661 4.67979 4.68987 4.70762 4.78726 4.83518 4.87333 4.93601 5.06481 5.08214 5.11176 5.19378 5.22918 5.27224 5.34369 5.42115 5.52605 5.61182 6.20736 6.45693 6.67790 6.90348 7.13703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.545 6.545 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.098 4.098 8 H 0.108 0.892 9 C -0.133 4.133 10 C 0.112 3.888 11 H 0.097 0.903 12 N -0.706 5.706 13 C 0.520 3.480 14 O -0.585 6.585 15 C -0.133 4.133 16 C 0.072 3.928 17 O -0.319 6.319 18 C 0.124 3.876 19 C -0.136 4.136 20 C -0.051 4.051 21 C -0.083 4.083 22 O -0.564 6.564 23 Si 0.783 3.217 24 C -0.181 4.181 25 C -0.076 4.076 26 C -0.211 4.211 27 C -0.146 4.146 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.418 0.582 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.140 0.860 43 H 0.098 0.902 44 H 0.405 0.595 45 H -0.287 1.287 46 H -0.298 1.298 47 H 0.122 0.878 48 H 0.149 0.851 49 H 0.143 0.857 50 H 0.091 0.909 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 0.778 2.037 3.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.435 6.435 5 C -0.147 4.147 6 C -0.128 4.128 7 C -0.117 4.117 8 H 0.126 0.874 9 C -0.171 4.171 10 C 0.008 3.992 11 H 0.115 0.885 12 N -0.357 5.357 13 C 0.308 3.692 14 O -0.465 6.465 15 C -0.173 4.173 16 C -0.003 4.003 17 O -0.233 6.233 18 C 0.078 3.922 19 C -0.155 4.155 20 C -0.052 4.052 21 C -0.192 4.192 22 O -0.374 6.374 23 Si 0.689 3.311 24 C -0.199 4.199 25 C -0.094 4.094 26 C -0.230 4.230 27 C -0.184 4.184 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.255 0.745 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.157 0.843 43 H 0.115 0.885 44 H 0.256 0.744 45 H -0.214 1.214 46 H -0.226 1.226 47 H 0.139 0.861 48 H 0.167 0.833 49 H 0.160 0.840 50 H 0.109 0.891 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.608 -0.234 1.313 2.089 hybrid contribution -0.933 -0.236 -0.439 1.058 sum -2.541 -0.470 0.874 2.728 Atomic orbital electron populations 1.23490 0.75234 1.05482 1.02349 1.86517 1.24703 1.33588 1.83742 1.24602 0.93607 0.80800 0.70935 1.90671 1.68397 1.37406 1.47006 1.21567 0.84820 1.00570 1.07757 1.21322 0.94552 0.93755 1.03220 1.22325 0.94049 0.97778 0.97567 0.87410 1.23379 0.96894 0.97572 0.99295 1.22562 0.97543 0.89142 0.89988 0.88509 1.45898 1.15956 1.32128 1.41702 1.20616 0.81894 0.85251 0.81486 1.90727 1.47698 1.42154 1.65962 1.21451 0.96686 0.99837 0.99324 1.22485 0.97336 0.89935 0.90552 1.85962 1.30419 1.52113 1.54844 1.19134 0.84755 0.94892 0.93383 1.20370 0.97657 0.99299 0.98132 1.19536 0.93196 0.95393 0.97030 1.24916 1.13532 0.84451 0.96305 1.86443 1.93259 1.15005 1.42654 0.94417 0.72998 0.82701 0.80961 1.20982 0.99171 0.98126 1.01589 1.21160 0.96152 0.97880 0.94202 1.21531 0.95321 1.01192 1.04910 1.23567 0.98019 0.99345 0.97506 0.92155 0.85498 0.92119 0.85915 0.85520 0.91437 0.91537 0.90236 0.88366 0.74454 0.85610 0.85481 0.91533 0.91743 0.84256 0.88462 0.74382 1.21437 1.22569 0.86109 0.83303 0.83962 0.89055 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.90 10.57 -51.40 -0.54 -1.44 16 3 C 0.46 1.27 7.96 71.24 0.57 1.84 16 4 O -0.54 -5.14 15.73 21.96 0.35 -4.79 16 5 C -0.11 0.55 5.80 29.85 0.17 0.72 16 6 C -0.09 0.41 4.34 30.59 0.13 0.55 16 7 C -0.10 0.66 3.65 -10.27 -0.04 0.62 16 8 H 0.11 -0.87 8.13 -2.39 -0.02 -0.89 16 9 C -0.13 0.85 7.39 31.12 0.23 1.08 16 10 C 0.11 -0.33 4.24 45.52 0.19 -0.14 16 11 H 0.10 0.15 7.46 -2.39 -0.02 0.14 16 12 N -0.71 2.74 5.35 -440.04 -2.36 0.39 16 13 C 0.52 0.72 7.83 87.66 0.69 1.40 16 14 O -0.59 -6.08 15.58 -3.01 -0.05 -6.13 16 15 C -0.13 0.39 6.07 29.85 0.18 0.57 16 16 C 0.07 0.21 4.03 71.98 0.29 0.50 16 17 O -0.32 -2.03 10.14 -92.45 -0.94 -2.97 16 18 C 0.12 1.04 6.69 22.51 0.15 1.19 16 19 C -0.14 -1.13 9.55 22.37 0.21 -0.92 16 20 C -0.05 -0.38 5.42 -19.88 -0.11 -0.49 16 21 C -0.08 -0.09 2.81 71.24 0.20 0.11 16 22 O -0.56 -0.63 12.74 -148.98 -1.90 -2.53 16 23 Si 0.78 -0.83 29.79 68.60 2.04 1.21 16 24 C -0.18 -1.40 8.67 22.28 0.19 -1.21 16 25 C -0.08 -0.48 10.04 22.25 0.22 -0.26 16 26 C -0.21 -1.47 9.04 22.37 0.20 -1.27 16 27 C -0.15 0.70 7.43 31.12 0.23 0.94 16 28 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 29 H 0.13 -0.83 8.14 -2.39 -0.02 -0.84 16 30 H 0.06 -0.03 8.13 -2.38 -0.02 -0.05 16 31 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H 0.13 -1.09 8.14 -2.38 -0.02 -1.11 16 33 H 0.07 -0.15 8.10 -2.39 -0.02 -0.17 16 34 H 0.07 -0.17 7.80 -2.39 -0.02 -0.19 16 35 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.10 -0.77 8.08 -2.38 -0.02 -0.79 16 37 H 0.42 -4.05 8.73 -92.71 -0.81 -4.86 16 38 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 40 H 0.07 0.26 7.62 -2.38 -0.02 0.25 16 41 H 0.06 0.28 7.62 -2.39 -0.02 0.27 16 42 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.10 -0.31 7.96 -2.39 -0.02 -0.33 16 44 H 0.40 -4.03 8.74 -74.06 -0.65 -4.68 16 45 H -0.29 -1.17 7.11 99.48 0.71 -0.47 16 46 H -0.30 -1.99 7.11 99.48 0.71 -1.29 16 47 H 0.12 0.76 4.87 -2.91 -0.01 0.75 16 48 H 0.15 0.22 8.06 -2.91 -0.02 0.19 16 49 H 0.14 0.64 6.30 -2.91 -0.02 0.62 16 50 H 0.09 -0.49 7.90 -2.39 -0.02 -0.51 16 51 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: 0.00 -27.45 424.31 1.06 -26.39 By element: Atomic # 1 Polarization: -16.08 SS G_CDS: -0.47 Total: -16.54 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 4.92 Total: 6.41 kcal Atomic # 7 Polarization: 2.74 SS G_CDS: -2.36 Total: 0.39 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -3.08 Total: -17.85 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: 2.04 Total: 1.21 kcal Total: -27.45 1.06 -26.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_4549614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.459 kcal (2) G-P(sol) polarization free energy of solvation -27.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds