Wall clock time and date at job start Sun Mar 7 2021 01:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 116.99501 * 2 1 4 4 O 1.20823 * 120.00380 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99439 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47050 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47438 * 179.97438 * 6 5 3 8 8 H 1.09001 * 112.84908 * 316.20465 * 7 6 5 9 9 C 1.53780 * 113.68806 * 87.46336 * 7 6 5 10 10 C 1.53781 * 87.08105 * 139.99461 * 9 7 6 11 11 H 1.09000 * 113.68927 * 89.12950 * 10 9 7 12 12 N 1.46495 * 113.61637 * 220.02458 * 10 9 7 13 13 C 1.34778 * 119.99713 * 252.49657 * 12 10 9 14 14 O 1.21694 * 120.00063 * 359.97438 * 13 12 10 15 15 C 1.46686 * 120.00174 * 180.02562 * 13 12 10 16 16 C 1.37860 * 126.23588 * 179.97438 * 15 13 12 17 17 C 1.39833 * 107.08711 * 179.97438 * 16 15 13 18 18 C 1.35449 * 107.86312 * 0.02562 * 17 16 15 19 19 C 1.50707 * 125.56210 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.46442 * 245.02004 * 19 18 17 21 21 Si 1.86293 * 109.47256 * 5.01570 * 19 18 17 22 22 N 1.35526 * 108.87513 * 0.22151 * 18 17 16 23 23 C 1.53775 * 113.61564 * 185.00063 * 7 6 5 24 24 H 1.09001 * 109.47166 * 300.00125 * 1 2 3 25 25 H 1.08999 * 109.47045 * 60.00231 * 1 2 3 26 26 H 1.08997 * 109.46611 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47324 * 60.00062 * 5 3 2 28 28 H 1.09000 * 109.47430 * 299.99732 * 5 3 2 29 29 H 1.09001 * 109.46749 * 60.00025 * 6 5 3 30 30 H 1.08995 * 109.47441 * 300.00082 * 6 5 3 31 31 H 1.09004 * 113.61199 * 25.44966 * 9 7 6 32 32 H 1.08997 * 113.62217 * 254.54697 * 9 7 6 33 33 H 0.97000 * 120.00477 * 72.49570 * 12 10 9 34 34 H 1.08005 * 126.46130 * 359.97438 * 16 15 13 35 35 H 1.08005 * 126.06901 * 179.97438 * 17 16 15 36 36 H 1.08999 * 109.47345 * 125.02074 * 19 18 17 37 37 H 0.96700 * 114.00311 * 60.00230 * 20 19 18 38 38 H 1.48506 * 109.99973 * 180.02562 * 21 19 18 39 39 H 1.48493 * 110.00375 * 301.32185 * 21 19 18 40 40 H 0.97002 * 125.68548 * 179.75275 * 22 18 17 41 41 H 1.09001 * 113.61055 * 105.38984 * 23 7 6 42 42 H 1.08993 * 113.69160 * 334.50103 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7422 -0.0002 7 6 5.5280 2.8223 0.0011 8 1 5.9881 2.1210 0.6972 9 6 6.1495 2.7914 -1.4053 10 6 7.1405 3.8556 -0.9051 11 1 8.0420 3.4382 -0.4566 12 7 7.4270 4.9003 -1.8913 13 6 8.6235 4.9321 -2.5109 14 8 9.4660 4.0934 -2.2508 15 6 8.9107 5.9785 -3.4980 16 6 10.0846 6.1324 -4.2043 17 6 9.9247 7.2506 -5.0285 18 6 8.6835 7.7495 -4.8157 19 6 8.0952 8.9571 -5.4989 20 8 7.8670 9.9861 -4.5339 21 14 9.2801 9.5749 -6.7969 22 7 8.0590 6.9887 -3.8840 23 6 6.0696 4.2564 0.1232 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.9564 0.7806 -0.8891 28 1 3.9557 0.7810 0.8908 29 1 3.6100 3.2368 0.8893 30 1 3.6108 3.2357 -0.8906 31 1 5.4799 3.1512 -2.1865 32 1 6.6193 1.8399 -1.6543 33 1 6.7557 5.5691 -2.0985 34 1 10.9626 5.5072 -4.1342 35 1 10.6605 7.6467 -5.7127 36 1 7.1507 8.6842 -5.9694 37 1 8.6660 10.2790 -4.0747 38 1 8.7118 10.7662 -7.4776 39 1 10.5825 9.9203 -6.1728 40 1 7.1606 7.1309 -3.5469 41 1 6.4750 4.4875 1.1083 42 1 5.3790 5.0177 -0.2396 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_6580494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:31:03 Heat of formation + Delta-G solvation = -91.952857 kcal Electronic energy + Delta-G solvation = -24555.144862 eV Core-core repulsion = 20696.174761 eV Total energy + Delta-G solvation = -3858.970101 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.54350 -41.57649 -40.91867 -39.38308 -37.82835 -37.64665 -35.31809 -33.47334 -32.11499 -31.34333 -29.13460 -27.42080 -26.72059 -26.32489 -24.00957 -22.56444 -21.64715 -21.40107 -21.30997 -20.70221 -19.68675 -18.63683 -18.17523 -17.70413 -17.54140 -17.28109 -16.69401 -16.32063 -16.27295 -16.06598 -15.42558 -15.29203 -15.14085 -14.61690 -14.54542 -14.36669 -14.12042 -13.98947 -13.84965 -13.66769 -13.43631 -13.36327 -13.05376 -12.73711 -12.35347 -12.31512 -11.97378 -11.88693 -11.83982 -11.72305 -11.44167 -11.29637 -11.15766 -10.83067 -10.20639 -10.08269 -9.29616 -4.83348 0.28641 1.13812 1.22240 1.53858 1.69328 1.75989 1.89517 2.03988 2.21625 2.25780 3.34917 3.47820 3.50464 3.59222 3.69932 3.77787 3.83007 3.85177 4.14206 4.23437 4.24424 4.24910 4.28938 4.31114 4.49274 4.52424 4.62774 4.67212 4.68948 4.74698 4.85354 4.91321 4.95105 5.04540 5.05791 5.10811 5.21367 5.30636 5.39831 5.52892 5.61693 5.78840 6.27167 6.39719 6.45345 6.67681 7.03045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.545 6.545 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.096 4.096 8 H 0.111 0.889 9 C -0.145 4.145 10 C 0.113 3.887 11 H 0.101 0.899 12 N -0.708 5.708 13 C 0.588 3.412 14 O -0.571 6.571 15 C -0.064 4.064 16 C -0.118 4.118 17 C -0.205 4.205 18 C 0.032 3.968 19 C -0.063 4.063 20 O -0.549 6.549 21 Si 0.795 3.205 22 N -0.512 5.512 23 C -0.134 4.134 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.408 0.592 34 H 0.146 0.854 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.390 0.610 38 H -0.299 1.299 39 H -0.282 1.282 40 H 0.427 0.573 41 H 0.081 0.919 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 -0.916 -1.400 2.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.301 3.699 4 O -0.436 6.436 5 C -0.147 4.147 6 C -0.128 4.128 7 C -0.115 4.115 8 H 0.129 0.871 9 C -0.184 4.184 10 C 0.009 3.991 11 H 0.119 0.881 12 N -0.358 5.358 13 C 0.377 3.623 14 O -0.450 6.450 15 C -0.178 4.178 16 C -0.145 4.145 17 C -0.229 4.229 18 C -0.087 4.087 19 C -0.172 4.172 20 O -0.357 6.357 21 Si 0.698 3.302 22 N -0.110 5.110 23 C -0.172 4.172 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.244 0.756 34 H 0.164 0.836 35 H 0.184 0.816 36 H 0.152 0.848 37 H 0.239 0.761 38 H -0.227 1.227 39 H -0.208 1.208 40 H 0.267 0.733 41 H 0.099 0.901 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.078 -0.662 -1.563 2.683 hybrid contribution -0.863 0.878 1.249 1.754 sum -2.941 0.216 -0.314 2.966 Atomic orbital electron populations 1.23490 0.75241 1.05498 1.02323 1.86521 1.24691 1.33558 1.83729 1.24599 0.93608 0.80801 0.70915 1.90669 1.68403 1.37431 1.47046 1.21567 0.84822 1.00491 1.07844 1.21317 0.94499 0.93843 1.03180 1.22315 0.94064 0.97574 0.97513 0.87107 1.23568 0.97861 0.99396 0.97550 1.22641 0.97828 0.88933 0.89743 0.88100 1.45815 1.15348 1.32391 1.42221 1.17283 0.82190 0.83064 0.79776 1.90836 1.47901 1.40804 1.65497 1.20354 0.94503 0.96219 1.06733 1.21489 0.96900 0.98964 0.97102 1.20946 0.97064 0.99513 1.05410 1.21261 0.94372 0.97060 0.96031 1.25077 1.10553 0.84355 0.97225 1.86580 1.38317 1.55208 1.55593 0.93284 0.73946 0.82746 0.80224 1.41905 1.15398 1.21558 1.32114 1.23388 0.96752 0.97717 0.99333 0.92149 0.92172 0.85463 0.85860 0.85413 0.91407 0.91636 0.89239 0.90920 0.75584 0.83634 0.81638 0.84787 0.76055 1.22667 1.20807 0.73313 0.90055 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.87 10.57 -51.42 -0.54 -1.41 16 3 C 0.46 1.25 7.96 71.24 0.57 1.82 16 4 O -0.55 -5.14 15.73 21.97 0.35 -4.79 16 5 C -0.11 0.55 5.80 29.85 0.17 0.73 16 6 C -0.09 0.41 4.34 30.60 0.13 0.54 16 7 C -0.10 0.63 3.65 -10.27 -0.04 0.59 16 8 H 0.11 -0.91 8.13 -2.39 -0.02 -0.93 16 9 C -0.15 0.62 7.43 31.12 0.23 0.85 16 10 C 0.11 -0.20 4.24 45.52 0.19 -0.01 16 11 H 0.10 0.25 7.46 -2.39 -0.02 0.23 16 12 N -0.71 0.88 5.35 -443.99 -2.38 -1.49 16 13 C 0.59 3.47 7.79 86.45 0.67 4.15 16 14 O -0.57 -8.19 16.48 -4.33 -0.07 -8.26 16 15 C -0.06 -0.21 7.06 40.35 0.28 0.08 16 16 C -0.12 -0.48 10.65 22.57 0.24 -0.24 16 17 C -0.21 0.08 9.32 22.01 0.21 0.28 16 18 C 0.03 -0.07 6.46 41.35 0.27 0.19 16 19 C -0.06 0.30 3.08 71.24 0.22 0.52 16 20 O -0.55 0.98 12.88 -148.98 -1.92 -0.93 16 21 Si 0.79 -3.91 30.56 68.60 2.10 -1.82 16 22 N -0.51 1.26 5.99 -171.93 -1.03 0.23 16 23 C -0.13 0.78 7.39 31.12 0.23 1.01 16 24 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 25 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 26 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 28 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 29 H 0.07 -0.15 8.10 -2.39 -0.02 -0.17 16 30 H 0.06 -0.16 7.81 -2.39 -0.02 -0.18 16 31 H 0.09 -0.42 7.90 -2.38 -0.02 -0.44 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.41 -2.83 7.86 -92.71 -0.73 -3.56 16 34 H 0.15 0.69 8.06 -2.91 -0.02 0.66 16 35 H 0.17 -0.71 6.19 -2.91 -0.02 -0.73 16 36 H 0.13 -0.99 7.96 -2.39 -0.02 -1.01 16 37 H 0.39 -2.48 8.70 -74.06 -0.64 -3.13 16 38 H -0.30 -0.75 7.11 99.48 0.71 -0.04 16 39 H -0.28 0.10 7.11 99.48 0.71 0.81 16 40 H 0.43 -3.21 8.19 -92.71 -0.76 -3.97 16 41 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.10 -0.69 8.08 -2.39 -0.02 -0.71 16 Total: 0.00 -23.84 358.91 0.05 -23.79 By element: Atomic # 1 Polarization: -15.95 SS G_CDS: -1.03 Total: -16.98 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 4.58 Total: 11.67 kcal Atomic # 7 Polarization: 2.15 SS G_CDS: -3.41 Total: -1.26 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -2.19 Total: -15.40 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: 2.10 Total: -1.82 kcal Total: -23.84 0.05 -23.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_6580494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.167 kcal (2) G-P(sol) polarization free energy of solvation -23.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds