Wall clock time and date at job start Sun Mar 7 2021 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 7 7 C 1.53003 * 109.47301 * 179.97438 * 6 5 3 8 8 H 1.08992 * 112.84639 * 316.19999 * 7 6 5 9 9 C 1.53788 * 113.61338 * 87.49918 * 7 6 5 10 10 C 1.53782 * 87.07903 * 139.98122 * 9 7 6 11 11 H 1.08996 * 113.68728 * 89.12834 * 10 9 7 12 12 N 1.46502 * 113.61342 * 220.01991 * 10 9 7 13 13 C 1.34783 * 119.99579 * 252.49742 * 12 10 9 14 14 O 1.21647 * 119.99837 * 0.02562 * 13 12 10 15 15 C 1.46985 * 119.99668 * 180.02562 * 13 12 10 16 16 C 1.35806 * 125.14312 * 180.02562 * 15 13 12 17 17 C 1.46251 * 106.09561 * 179.97438 * 16 15 13 18 18 C 1.39771 * 134.15516 * 180.02562 * 17 16 15 19 19 C 1.50693 * 120.09628 * 359.95264 * 18 17 16 20 20 O 1.42901 * 109.47115 * 74.99824 * 19 18 17 21 21 Si 1.86302 * 109.47497 * 194.99890 * 19 18 17 22 22 C 1.36633 * 119.81350 * 179.97438 * 18 17 16 23 23 C 1.38768 * 120.49486 * 0.02562 * 22 18 17 24 24 C 1.38265 * 120.67932 * 359.97438 * 23 22 18 25 25 O 1.35961 * 120.12361 * 179.97438 * 24 23 22 26 26 C 1.42902 * 116.99856 * 0.02562 * 25 24 23 27 27 C 1.39449 * 119.75290 * 0.02562 * 24 23 22 28 28 O 1.34777 * 133.23863 * 180.36663 * 27 24 23 29 29 C 1.53781 * 87.08310 * 334.56707 * 10 9 7 30 30 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 31 31 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 32 32 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 34 34 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 35 35 H 1.09004 * 109.47066 * 299.99799 * 6 5 3 36 36 H 1.08994 * 109.47405 * 59.99969 * 6 5 3 37 37 H 1.09000 * 113.61377 * 254.53330 * 9 7 6 38 38 H 1.09005 * 113.61211 * 25.43743 * 9 7 6 39 39 H 0.96993 * 120.00021 * 72.50158 * 12 10 9 40 40 H 1.08007 * 126.94994 * 0.02562 * 16 15 13 41 41 H 1.09002 * 109.47460 * 315.00012 * 19 18 17 42 42 H 0.96710 * 114.00148 * 179.97438 * 20 19 18 43 43 H 1.48501 * 110.00158 * 178.67836 * 21 19 18 44 44 H 1.48496 * 110.00227 * 300.00240 * 21 19 18 45 45 H 1.08001 * 119.75512 * 179.97438 * 22 18 17 46 46 H 1.08002 * 119.66329 * 179.97438 * 23 22 18 47 47 H 1.09001 * 109.47477 * 300.00094 * 26 25 24 48 48 H 1.08995 * 109.47063 * 60.00195 * 26 25 24 49 49 H 1.09001 * 109.47215 * 180.02562 * 26 25 24 50 50 H 1.08994 * 113.61880 * 270.88570 * 29 10 9 51 51 H 1.09003 * 113.61410 * 139.97660 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.0000 2.7422 -0.0119 7 6 5.5279 2.8223 -0.0176 8 1 5.9910 2.1225 0.6780 9 6 6.1413 2.7892 -1.4274 10 6 7.1350 3.8544 -0.9346 11 1 8.0391 3.4378 -0.4907 12 7 7.4158 4.8976 -1.9242 13 6 8.6088 4.9285 -2.5507 14 8 9.4521 4.0900 -2.2947 15 6 8.8907 5.9754 -3.5431 16 6 10.0524 6.1048 -4.2345 17 6 9.8824 7.2728 -5.0981 18 6 10.6956 7.9184 -6.0338 19 6 12.0833 7.4016 -6.3132 20 8 11.9993 6.2177 -7.1092 21 14 13.0562 8.6988 -7.2305 22 6 10.2289 9.0198 -6.6941 23 6 8.9528 9.5035 -6.4425 24 6 8.1312 8.8808 -5.5212 25 8 6.8831 9.3646 -5.2831 26 6 6.4839 10.5211 -6.0216 27 6 8.5879 7.7552 -4.8362 28 8 8.0322 6.9500 -3.9093 29 6 6.0700 4.2567 0.0992 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.9595 0.7833 0.8836 34 1 3.9525 0.7785 -0.8964 35 1 3.6067 3.2339 -0.9017 36 1 3.6139 3.2387 0.8782 37 1 6.6098 1.8374 -1.6775 38 1 5.4672 3.1478 -2.2054 39 1 6.7432 5.5659 -2.1285 40 1 10.9250 5.4724 -4.1618 41 1 12.5819 7.1717 -5.3716 42 1 12.8575 5.8294 -7.3284 43 1 14.4366 8.2137 -7.4841 44 1 12.3868 9.0212 -8.5163 45 1 10.8582 9.5182 -7.4166 46 1 8.5977 10.3754 -6.9718 47 1 7.1639 11.3445 -5.8029 48 1 6.5135 10.2991 -7.0883 49 1 5.4701 10.8021 -5.7365 50 1 5.3764 5.0162 -0.2614 51 1 6.4810 4.4894 1.0815 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_6672420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:31:07 Heat of formation + Delta-G solvation = -128.704036 kcal Electronic energy + Delta-G solvation = -35259.457058 eV Core-core repulsion = 30286.738792 eV Total energy + Delta-G solvation = -4972.718265 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.165 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.78320 -41.60188 -41.25000 -40.60552 -39.55747 -39.01914 -37.64589 -37.22557 -35.36542 -33.69368 -33.42283 -32.01437 -31.05890 -29.15955 -28.57971 -27.06103 -26.66568 -26.24844 -25.18823 -24.03915 -23.01066 -21.94265 -21.73647 -21.48454 -20.78540 -19.65380 -18.91175 -18.62604 -18.59382 -18.43538 -17.77130 -17.69552 -17.54438 -17.36727 -17.03490 -16.61454 -16.37056 -16.25182 -15.90344 -15.79728 -15.61582 -15.31795 -14.79872 -14.61007 -14.53289 -14.23618 -14.15747 -14.01596 -13.95306 -13.84699 -13.43450 -13.42347 -13.38943 -13.23444 -13.06112 -12.75443 -12.55143 -12.39107 -12.33750 -12.07957 -11.99394 -11.84032 -11.74491 -11.72651 -11.53716 -11.37096 -11.17502 -11.04693 -10.49444 -10.26995 -9.85222 -9.03404 -4.90784 -0.70320 0.06377 0.58283 1.14542 1.15370 1.28597 1.61421 1.76255 1.85498 1.92659 1.93441 2.11205 2.33437 3.13560 3.35755 3.48201 3.51038 3.52921 3.69045 3.72518 3.78237 3.81379 3.84076 3.92374 3.96469 4.11638 4.15017 4.24019 4.24955 4.29534 4.30945 4.35507 4.40558 4.42191 4.51200 4.63552 4.65495 4.69141 4.74913 4.76968 4.80423 4.83456 4.85552 4.93062 4.99761 5.00979 5.04943 5.20107 5.22461 5.26383 5.31790 5.39699 5.51734 5.60497 6.17479 6.27371 6.57562 6.68436 6.79702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.545 6.545 5 C -0.109 4.109 6 C -0.092 4.092 7 C -0.094 4.094 8 H 0.116 0.884 9 C -0.148 4.148 10 C 0.110 3.890 11 H 0.111 0.889 12 N -0.695 5.695 13 C 0.603 3.397 14 O -0.545 6.545 15 C -0.035 4.035 16 C -0.111 4.111 17 C -0.099 4.099 18 C -0.065 4.065 19 C -0.093 4.093 20 O -0.557 6.557 21 Si 0.778 3.222 22 C -0.090 4.090 23 C -0.166 4.166 24 C 0.137 3.863 25 O -0.332 6.332 26 C 0.013 3.987 27 C 0.021 3.979 28 O -0.181 6.181 29 C -0.134 4.134 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.416 0.584 40 H 0.176 0.824 41 H 0.086 0.914 42 H 0.395 0.605 43 H -0.286 1.286 44 H -0.281 1.281 45 H 0.161 0.839 46 H 0.181 0.819 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.116 0.884 50 H 0.093 0.907 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 3.786 0.032 3.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.436 6.436 5 C -0.147 4.147 6 C -0.130 4.130 7 C -0.113 4.113 8 H 0.134 0.866 9 C -0.186 4.186 10 C 0.006 3.994 11 H 0.129 0.871 12 N -0.344 5.344 13 C 0.389 3.611 14 O -0.424 6.424 15 C -0.085 4.085 16 C -0.132 4.132 17 C -0.100 4.100 18 C -0.065 4.065 19 C -0.200 4.200 20 O -0.368 6.368 21 Si 0.681 3.319 22 C -0.107 4.107 23 C -0.184 4.184 24 C 0.091 3.909 25 O -0.246 6.246 26 C -0.080 4.080 27 C -0.027 4.027 28 O -0.083 6.083 29 C -0.172 4.172 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.253 0.747 40 H 0.193 0.807 41 H 0.104 0.896 42 H 0.245 0.755 43 H -0.213 1.213 44 H -0.208 1.208 45 H 0.178 0.822 46 H 0.198 0.802 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.135 0.865 50 H 0.111 0.889 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.037 3.746 -0.174 3.750 hybrid contribution -0.347 -0.866 -0.616 1.118 sum -0.310 2.880 -0.789 3.002 Atomic orbital electron populations 1.23489 0.75262 1.05495 1.02314 1.86517 1.24679 1.33549 1.83745 1.24618 0.93641 0.80797 0.70918 1.90675 1.68410 1.37452 1.47031 1.21564 0.84786 1.00415 1.07891 1.21327 0.94603 0.93901 1.03160 1.22323 0.94062 0.97565 0.97304 0.86591 1.23595 0.97901 0.99399 0.97719 1.22826 0.98420 0.88658 0.89479 0.87110 1.45943 1.15141 1.32378 1.40917 1.16686 0.83071 0.81934 0.79412 1.90874 1.47547 1.39137 1.64861 1.22029 0.91087 0.93129 1.02261 1.22849 0.98621 0.96881 0.94813 1.19605 0.93595 0.96705 1.00060 1.18662 0.95457 0.96091 0.96315 1.25155 0.98296 0.95704 1.00834 1.86573 1.36016 1.41370 1.72800 0.93953 0.74406 0.83350 0.80168 1.20838 0.95851 0.95429 0.98615 1.21350 0.94296 1.03178 0.99614 1.17955 0.86536 0.91005 0.95367 1.86143 1.27690 1.46734 1.64038 1.23494 1.02821 0.85028 0.96688 1.19178 0.93213 0.94900 0.95391 1.84012 1.40379 1.34674 1.49222 1.23399 0.96698 0.97752 0.99336 0.92106 0.92251 0.85438 0.85198 0.85915 0.91921 0.91252 0.90477 0.89582 0.74741 0.80697 0.89568 0.75499 1.21276 1.20789 0.82171 0.80207 0.90337 0.90983 0.86541 0.88867 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.37 -1.17 10.57 -51.41 -0.54 -1.72 16 3 C 0.45 1.71 7.96 71.23 0.57 2.28 16 4 O -0.55 -5.78 15.73 21.94 0.35 -5.44 16 5 C -0.11 0.45 5.80 29.85 0.17 0.62 16 6 C -0.09 0.29 4.34 30.59 0.13 0.42 16 7 C -0.09 0.52 3.65 -10.26 -0.04 0.49 16 8 H 0.12 -0.95 8.13 -2.39 -0.02 -0.97 16 9 C -0.15 0.40 7.43 31.12 0.23 0.63 16 10 C 0.11 -0.04 4.24 45.52 0.19 0.15 16 11 H 0.11 0.22 7.46 -2.39 -0.02 0.20 16 12 N -0.69 -1.81 5.35 -443.71 -2.37 -4.18 16 13 C 0.60 5.25 7.80 86.53 0.67 5.92 16 14 O -0.54 -7.70 16.42 -4.18 -0.07 -7.76 16 15 C -0.03 -0.32 7.07 24.00 0.17 -0.15 16 16 C -0.11 -0.99 10.68 23.79 0.25 -0.74 16 17 C -0.10 -0.82 6.16 -20.25 -0.12 -0.95 16 18 C -0.06 -0.28 5.30 -19.87 -0.11 -0.39 16 19 C -0.09 -0.08 2.70 71.23 0.19 0.11 16 20 O -0.56 -2.14 12.86 -148.98 -1.92 -4.06 16 21 Si 0.78 -2.53 30.20 68.60 2.07 -0.46 16 22 C -0.09 -0.03 8.62 22.02 0.19 0.16 16 23 C -0.17 0.08 9.03 22.40 0.20 0.28 16 24 C 0.14 0.70 6.70 22.57 0.15 0.85 16 25 O -0.33 -1.35 10.50 -93.12 -0.98 -2.33 16 26 C 0.01 -0.07 9.81 113.37 1.11 1.04 16 27 C 0.02 0.20 7.35 23.14 0.17 0.37 16 28 O -0.18 -1.76 10.28 -13.49 -0.14 -1.90 16 29 C -0.13 0.58 7.39 31.12 0.23 0.81 16 30 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 31 H 0.06 0.03 8.13 -2.38 -0.02 0.01 16 32 H 0.13 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H 0.13 -1.08 8.14 -2.38 -0.02 -1.10 16 34 H 0.12 -0.85 8.14 -2.39 -0.02 -0.86 16 35 H 0.06 -0.02 7.80 -2.38 -0.02 -0.04 16 36 H 0.07 -0.08 8.10 -2.39 -0.02 -0.10 16 37 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.09 -0.17 7.90 -2.38 -0.02 -0.19 16 39 H 0.42 -0.09 8.44 -92.71 -0.78 -0.88 16 40 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 41 H 0.09 -0.14 7.96 -2.39 -0.02 -0.16 16 42 H 0.39 -1.73 8.74 -74.05 -0.65 -2.38 16 43 H -0.29 -0.33 7.11 99.48 0.71 0.37 16 44 H -0.28 -0.40 6.75 99.48 0.67 0.27 16 45 H 0.16 -0.69 4.85 -2.91 -0.01 -0.71 16 46 H 0.18 -1.40 6.26 -2.91 -0.02 -1.41 16 47 H 0.08 -0.70 7.66 -2.39 -0.02 -0.72 16 48 H 0.07 -0.57 7.66 -2.39 -0.02 -0.59 16 49 H 0.12 -0.94 8.14 -2.39 -0.02 -0.96 16 50 H 0.09 -0.43 8.08 -2.39 -0.02 -0.45 16 51 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 Total: 0.00 -27.18 430.56 1.54 -25.65 By element: Atomic # 1 Polarization: -10.47 SS G_CDS: -0.43 Total: -10.90 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 5.57 Total: 13.10 kcal Atomic # 7 Polarization: -1.81 SS G_CDS: -2.37 Total: -4.18 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -3.30 Total: -23.20 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: 2.07 Total: -0.46 kcal Total: -27.18 1.54 -25.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_6672420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.058 kcal (2) G-P(sol) polarization free energy of solvation -27.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds