Wall clock time and date at job start Sun Mar 7 2021 01:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00043 * 2 1 4 4 O 1.20829 * 120.00247 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99807 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.46972 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47213 * 179.97438 * 6 5 3 8 8 H 1.09007 * 112.84586 * 316.19968 * 7 6 5 9 9 C 1.53775 * 113.61313 * 87.49697 * 7 6 5 10 10 C 1.53786 * 87.07617 * 139.98465 * 9 7 6 11 11 H 1.09003 * 113.69159 * 89.13077 * 10 9 7 12 12 N 1.46506 * 113.61233 * 220.01686 * 10 9 7 13 13 C 1.34773 * 120.00421 * 252.49633 * 12 10 9 14 14 O 1.21636 * 119.99778 * 0.02562 * 13 12 10 15 15 C 1.47187 * 120.00172 * 180.02562 * 13 12 10 16 16 C 1.36004 * 123.46040 * 359.97438 * 15 13 12 17 17 S 1.70450 * 110.81782 * 180.02562 * 16 15 13 18 18 C 1.75509 * 92.44301 * 359.97438 * 17 16 15 19 19 C 1.50702 * 124.70836 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47007 * 120.02982 * 19 18 17 21 21 Si 1.86300 * 109.47301 * 0.02562 * 19 18 17 22 22 C 1.32768 * 110.57386 * 0.26995 * 18 17 16 23 23 C 1.53776 * 87.08270 * 334.56606 * 10 9 7 24 24 H 1.09002 * 109.47501 * 60.00026 * 1 2 3 25 25 H 1.08997 * 109.47651 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47035 * 300.00269 * 1 2 3 27 27 H 1.08997 * 109.47335 * 60.00118 * 5 3 2 28 28 H 1.08996 * 109.46891 * 299.99108 * 5 3 2 29 29 H 1.08997 * 109.47308 * 59.99606 * 6 5 3 30 30 H 1.09005 * 109.46796 * 299.99948 * 6 5 3 31 31 H 1.09000 * 113.61478 * 25.43888 * 9 7 6 32 32 H 1.08999 * 113.62180 * 254.52947 * 9 7 6 33 33 H 0.97004 * 119.99534 * 72.49851 * 12 10 9 34 34 H 1.08004 * 124.59433 * 359.97438 * 16 15 13 35 35 H 1.09004 * 109.46923 * 240.02551 * 19 18 17 36 36 H 0.96700 * 113.99509 * 299.99566 * 20 19 18 37 37 H 1.48498 * 109.99634 * 58.68378 * 21 19 18 38 38 H 1.48502 * 109.99691 * 180.02562 * 21 19 18 39 39 H 1.08004 * 123.45526 * 179.73622 * 22 18 17 40 40 H 1.08999 * 113.61080 * 139.97920 * 23 10 9 41 41 H 1.08997 * 113.61893 * 270.80400 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0002 2.7420 -0.0011 7 6 5.5281 2.8221 -0.0011 8 1 5.9886 2.1204 0.6945 9 6 6.1465 2.7923 -1.4087 10 6 7.1385 3.8562 -0.9096 11 1 8.0410 3.4385 -0.4634 12 7 7.4230 4.9018 -1.8957 13 6 8.6182 4.9343 -2.5177 14 8 9.4605 4.0952 -2.2607 15 6 8.9042 5.9850 -3.5079 16 6 8.0151 6.9561 -3.8488 17 16 8.6782 7.9997 -5.0221 18 6 10.1933 7.1147 -5.0617 19 6 11.3710 7.4682 -5.9330 20 8 12.5075 7.7399 -5.1104 21 14 10.9630 8.9771 -6.9466 22 6 10.1557 6.0875 -4.2213 23 6 6.0698 4.2561 0.1212 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.9557 0.7808 -0.8908 28 1 3.9563 0.7806 0.8892 29 1 3.6107 3.2364 0.8888 30 1 3.6101 3.2359 -0.8911 31 1 5.4753 3.1528 -2.1882 32 1 6.6160 1.8411 -1.6595 33 1 6.7511 5.5707 -2.1008 34 1 7.0229 7.0525 -3.4331 35 1 11.5948 6.6336 -6.5975 36 1 12.3796 8.4727 -4.4925 37 1 10.6251 10.1134 -6.0523 38 1 12.1163 9.3356 -7.8106 39 1 10.9778 5.4008 -4.0833 40 1 6.4773 4.4864 1.1056 41 1 5.3784 5.0176 -0.2395 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14475074_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:31:16 Heat of formation + Delta-G solvation = -103.320334 kcal Electronic energy + Delta-G solvation = -24138.414147 eV Core-core repulsion = 20305.303132 eV Total energy + Delta-G solvation = -3833.111015 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55442 -41.20233 -39.85355 -38.72895 -37.54444 -37.11992 -35.20485 -33.45803 -31.67140 -29.14796 -27.20712 -26.96999 -26.77942 -25.57160 -23.17967 -21.96130 -21.48020 -21.07032 -20.23270 -19.00008 -18.56588 -18.07819 -17.71618 -17.64920 -17.50195 -16.96982 -16.44703 -16.33390 -15.96605 -15.69180 -15.40125 -15.24510 -14.62853 -14.39106 -14.14576 -14.10850 -13.90707 -13.71064 -13.57393 -13.57125 -13.32394 -13.07387 -12.79473 -12.67249 -12.41192 -12.39404 -12.04133 -11.83003 -11.77781 -11.70855 -11.38826 -11.30398 -10.91634 -10.73123 -10.10696 -9.99422 -9.52055 -5.14607 -0.38253 0.31961 0.66521 0.89299 1.16389 1.22257 1.49370 1.72893 1.84466 2.14254 2.35455 3.22320 3.37635 3.39420 3.52261 3.64057 3.71991 3.75312 3.82293 3.94273 4.03337 4.11019 4.15938 4.24187 4.26307 4.38063 4.44052 4.47238 4.57030 4.60893 4.62099 4.69742 4.71920 4.78761 4.93961 4.98785 5.03540 5.09711 5.20965 5.27459 5.42674 5.53235 6.27602 6.46252 6.75333 7.21950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.458 3.542 4 O -0.508 6.508 5 C -0.114 4.114 6 C -0.096 4.096 7 C -0.108 4.108 8 H 0.099 0.901 9 C -0.149 4.149 10 C 0.123 3.877 11 H 0.118 0.882 12 N -0.716 5.716 13 C 0.579 3.421 14 O -0.532 6.532 15 C -0.156 4.156 16 C -0.206 4.206 17 S 0.198 5.802 18 C -0.242 4.242 19 C -0.033 4.033 20 O -0.522 6.522 21 Si 0.650 3.350 22 C -0.054 4.054 23 C -0.141 4.141 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.399 0.601 34 H 0.171 0.829 35 H 0.128 0.872 36 H 0.378 0.622 37 H -0.239 1.239 38 H -0.234 1.234 39 H 0.157 0.843 40 H 0.078 0.922 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 0.962 -1.134 4.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.301 3.699 4 O -0.396 6.396 5 C -0.151 4.151 6 C -0.134 4.134 7 C -0.127 4.127 8 H 0.118 0.882 9 C -0.188 4.188 10 C 0.018 3.982 11 H 0.136 0.864 12 N -0.367 5.367 13 C 0.364 3.636 14 O -0.409 6.409 15 C -0.174 4.174 16 C -0.345 4.345 17 S 0.464 5.536 18 C -0.359 4.359 19 C -0.145 4.145 20 O -0.329 6.329 21 Si 0.549 3.451 22 C -0.083 4.083 23 C -0.179 4.179 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.234 0.766 34 H 0.188 0.812 35 H 0.146 0.854 36 H 0.226 0.774 37 H -0.163 1.163 38 H -0.157 1.157 39 H 0.174 0.826 40 H 0.097 0.903 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.817 2.273 -2.238 4.974 hybrid contribution 0.220 -0.773 1.790 1.962 sum -3.597 1.499 -0.448 3.922 Atomic orbital electron populations 1.23302 0.75979 1.03959 1.02670 1.86512 1.23767 1.33549 1.83992 1.23922 0.92422 0.81338 0.72184 1.90689 1.67385 1.36366 1.45166 1.21447 0.87185 1.00327 1.06176 1.21399 0.94217 0.93774 1.04013 1.22383 0.94749 0.97571 0.97987 0.88242 1.23598 0.98320 1.00023 0.96879 1.22555 0.97917 0.88510 0.89228 0.86425 1.45843 1.16151 1.32112 1.42610 1.17654 0.81831 0.83861 0.80209 1.90820 1.46260 1.39684 1.64173 1.20276 0.95500 0.98829 1.02825 1.25799 1.04389 1.00508 1.03762 1.83114 1.05754 1.28600 1.36147 1.24751 1.01037 1.02640 1.07449 1.24410 0.83895 1.10468 0.95710 1.86647 1.36337 1.55977 1.53912 0.95321 0.89099 0.77192 0.83515 1.21055 0.96549 0.96959 0.93711 1.23402 0.97525 0.97223 0.99769 0.91789 0.87893 0.91783 0.87451 0.87426 0.90568 0.90731 0.89498 0.90601 0.76586 0.81167 0.85422 0.77419 1.16309 1.15676 0.82591 0.90342 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.45 10.56 -39.24 -0.41 -0.87 16 3 C 0.46 0.61 7.96 36.01 0.29 0.90 16 4 O -0.51 -2.18 15.73 -18.75 -0.29 -2.48 16 5 C -0.11 0.23 5.80 -27.88 -0.16 0.07 16 6 C -0.10 0.19 4.34 -26.73 -0.12 0.07 16 7 C -0.11 0.30 3.65 -89.81 -0.33 -0.03 16 8 H 0.10 -0.33 8.13 -51.93 -0.42 -0.75 16 9 C -0.15 0.27 7.43 -25.92 -0.19 0.08 16 10 C 0.12 -0.10 4.24 -67.11 -0.28 -0.39 16 11 H 0.12 0.11 7.46 -51.93 -0.39 -0.28 16 12 N -0.72 0.40 5.32 -54.16 -0.29 0.11 16 13 C 0.58 1.52 7.79 -12.63 -0.10 1.42 16 14 O -0.53 -3.51 16.40 5.25 0.09 -3.43 16 15 C -0.16 -0.18 5.98 -104.63 -0.63 -0.80 16 16 C -0.21 0.32 10.38 29.93 0.31 0.63 16 17 S 0.20 -0.36 20.18 -107.50 -2.17 -2.53 16 18 C -0.24 0.03 5.68 -36.18 -0.21 -0.17 16 19 C -0.03 0.02 2.95 36.01 0.11 0.13 16 20 O -0.52 -0.52 12.85 -35.23 -0.45 -0.97 16 21 Si 0.65 -0.99 30.91 -169.99 -5.25 -6.24 16 22 C -0.05 -0.09 9.91 -39.02 -0.39 -0.47 16 23 C -0.14 0.36 7.39 -25.92 -0.19 0.17 16 24 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 25 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 26 H 0.06 -0.03 8.13 -51.93 -0.42 -0.46 16 27 H 0.11 -0.34 8.14 -51.93 -0.42 -0.77 16 28 H 0.11 -0.38 8.14 -51.93 -0.42 -0.80 16 29 H 0.08 -0.08 8.10 -51.93 -0.42 -0.50 16 30 H 0.07 -0.09 7.80 -51.93 -0.41 -0.49 16 31 H 0.09 -0.17 7.90 -51.93 -0.41 -0.58 16 32 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 33 H 0.40 -1.28 7.22 -40.82 -0.29 -1.57 16 34 H 0.17 -0.76 7.01 -52.48 -0.37 -1.12 16 35 H 0.13 -0.17 7.96 -51.93 -0.41 -0.58 16 36 H 0.38 -0.73 8.70 45.56 0.40 -0.33 16 37 H -0.24 0.00 7.11 56.52 0.40 0.40 16 38 H -0.23 -0.32 7.11 56.52 0.40 0.08 16 39 H 0.16 0.42 8.06 -52.48 -0.42 -0.01 16 40 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 41 H 0.09 -0.28 8.08 -51.93 -0.42 -0.70 16 LS Contribution 363.63 15.07 5.48 5.48 Total: 0.00 -9.19 363.63 -9.85 -19.04 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: -5.72 Total: -10.77 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.82 Total: 2.65 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -0.29 Total: 0.11 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -1.08 Total: -7.74 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: -5.25 Total: -6.24 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.17 Total: -2.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -9.19 -9.85 -19.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.280 kcal (2) G-P(sol) polarization free energy of solvation -9.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds