Wall clock time and date at job start Sun Mar 7 2021 01:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00043 * 2 1 4 4 O 1.20829 * 120.00247 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99807 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.46972 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47213 * 179.97438 * 6 5 3 8 8 H 1.09007 * 112.84586 * 316.19968 * 7 6 5 9 9 C 1.53775 * 113.61313 * 87.49697 * 7 6 5 10 10 C 1.53786 * 87.07617 * 139.98465 * 9 7 6 11 11 H 1.09003 * 113.69159 * 89.13077 * 10 9 7 12 12 N 1.46506 * 113.61233 * 220.01686 * 10 9 7 13 13 C 1.34773 * 120.00421 * 252.49633 * 12 10 9 14 14 O 1.21636 * 119.99778 * 0.02562 * 13 12 10 15 15 C 1.47187 * 120.00172 * 180.02562 * 13 12 10 16 16 C 1.36004 * 123.46040 * 359.97438 * 15 13 12 17 17 S 1.70450 * 110.81782 * 180.02562 * 16 15 13 18 18 C 1.75509 * 92.44301 * 359.97438 * 17 16 15 19 19 C 1.50702 * 124.70836 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47007 * 120.02982 * 19 18 17 21 21 Si 1.86300 * 109.47301 * 0.02562 * 19 18 17 22 22 C 1.32768 * 110.57386 * 0.26995 * 18 17 16 23 23 C 1.53776 * 87.08270 * 334.56606 * 10 9 7 24 24 H 1.09002 * 109.47501 * 60.00026 * 1 2 3 25 25 H 1.08997 * 109.47651 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47035 * 300.00269 * 1 2 3 27 27 H 1.08997 * 109.47335 * 60.00118 * 5 3 2 28 28 H 1.08996 * 109.46891 * 299.99108 * 5 3 2 29 29 H 1.08997 * 109.47308 * 59.99606 * 6 5 3 30 30 H 1.09005 * 109.46796 * 299.99948 * 6 5 3 31 31 H 1.09000 * 113.61478 * 25.43888 * 9 7 6 32 32 H 1.08999 * 113.62180 * 254.52947 * 9 7 6 33 33 H 0.97004 * 119.99534 * 72.49851 * 12 10 9 34 34 H 1.08004 * 124.59433 * 359.97438 * 16 15 13 35 35 H 1.09004 * 109.46923 * 240.02551 * 19 18 17 36 36 H 0.96700 * 113.99509 * 299.99566 * 20 19 18 37 37 H 1.48498 * 109.99634 * 58.68378 * 21 19 18 38 38 H 1.48502 * 109.99691 * 180.02562 * 21 19 18 39 39 H 1.08004 * 123.45526 * 179.73622 * 22 18 17 40 40 H 1.08999 * 113.61080 * 139.97920 * 23 10 9 41 41 H 1.08997 * 113.61893 * 270.80400 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0002 2.7420 -0.0011 7 6 5.5281 2.8221 -0.0011 8 1 5.9886 2.1204 0.6945 9 6 6.1465 2.7923 -1.4087 10 6 7.1385 3.8562 -0.9096 11 1 8.0410 3.4385 -0.4634 12 7 7.4230 4.9018 -1.8957 13 6 8.6182 4.9343 -2.5177 14 8 9.4605 4.0952 -2.2607 15 6 8.9042 5.9850 -3.5079 16 6 8.0151 6.9561 -3.8488 17 16 8.6782 7.9997 -5.0221 18 6 10.1933 7.1147 -5.0617 19 6 11.3710 7.4682 -5.9330 20 8 12.5075 7.7399 -5.1104 21 14 10.9630 8.9771 -6.9466 22 6 10.1557 6.0875 -4.2213 23 6 6.0698 4.2561 0.1212 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.9557 0.7808 -0.8908 28 1 3.9563 0.7806 0.8892 29 1 3.6107 3.2364 0.8888 30 1 3.6101 3.2359 -0.8911 31 1 5.4753 3.1528 -2.1882 32 1 6.6160 1.8411 -1.6595 33 1 6.7511 5.5707 -2.1008 34 1 7.0229 7.0525 -3.4331 35 1 11.5948 6.6336 -6.5975 36 1 12.3796 8.4727 -4.4925 37 1 10.6251 10.1134 -6.0523 38 1 12.1163 9.3356 -7.8106 39 1 10.9778 5.4008 -4.0833 40 1 6.4773 4.4864 1.1056 41 1 5.3784 5.0176 -0.2395 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:31:15 Heat of formation + Delta-G solvation = -102.779150 kcal Electronic energy + Delta-G solvation = -24138.390679 eV Core-core repulsion = 20305.303132 eV Total energy + Delta-G solvation = -3833.087547 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.107 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59525 -41.26718 -39.81895 -38.77242 -37.63205 -37.17327 -35.24540 -33.42026 -31.64799 -29.10387 -27.15375 -26.93972 -26.63948 -25.55794 -23.13624 -22.00848 -21.46770 -21.00080 -20.19513 -18.95315 -18.61838 -18.11626 -17.73088 -17.67772 -17.50784 -16.95149 -16.44882 -16.23742 -16.03814 -15.73317 -15.34107 -15.22958 -14.61408 -14.42711 -14.15862 -14.08518 -13.83128 -13.70115 -13.57511 -13.39215 -13.30084 -13.02356 -12.73962 -12.61459 -12.43433 -12.27814 -11.94469 -11.83635 -11.79714 -11.68482 -11.38435 -11.18561 -10.99570 -10.76066 -10.15352 -9.96503 -9.44263 -5.05288 -0.34198 0.39329 0.69701 0.81456 1.15773 1.22347 1.56073 1.78084 1.90366 2.15206 2.25009 3.29501 3.51590 3.53684 3.59867 3.73400 3.84561 3.86337 3.92344 3.98663 4.17285 4.25298 4.26462 4.28576 4.31049 4.49822 4.53888 4.65385 4.69711 4.70606 4.71404 4.79171 4.88843 4.94714 4.99520 5.07585 5.11954 5.16894 5.24817 5.35308 5.43311 5.62475 6.39602 6.47956 6.69640 7.15243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.544 6.544 5 C -0.111 4.111 6 C -0.090 4.090 7 C -0.097 4.097 8 H 0.108 0.892 9 C -0.145 4.145 10 C 0.112 3.888 11 H 0.095 0.905 12 N -0.701 5.701 13 C 0.574 3.426 14 O -0.586 6.586 15 C -0.184 4.184 16 C -0.191 4.191 17 S 0.251 5.749 18 C -0.246 4.246 19 C -0.047 4.047 20 O -0.545 6.545 21 Si 0.731 3.269 22 C -0.077 4.077 23 C -0.132 4.132 24 H 0.060 0.940 25 H 0.127 0.873 26 H 0.060 0.940 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.414 0.586 34 H 0.204 0.796 35 H 0.130 0.870 36 H 0.388 0.612 37 H -0.252 1.252 38 H -0.276 1.276 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 1.796 -1.318 6.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.115 4.115 8 H 0.126 0.874 9 C -0.184 4.184 10 C 0.007 3.993 11 H 0.113 0.887 12 N -0.352 5.352 13 C 0.361 3.639 14 O -0.468 6.468 15 C -0.202 4.202 16 C -0.329 4.329 17 S 0.517 5.483 18 C -0.363 4.363 19 C -0.158 4.158 20 O -0.353 6.353 21 Si 0.631 3.369 22 C -0.106 4.106 23 C -0.170 4.170 24 H 0.079 0.921 25 H 0.145 0.855 26 H 0.079 0.921 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.252 0.748 34 H 0.221 0.779 35 H 0.147 0.853 36 H 0.238 0.762 37 H -0.177 1.177 38 H -0.201 1.201 39 H 0.149 0.851 40 H 0.098 0.902 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.456 3.099 -2.402 6.719 hybrid contribution 0.704 -1.007 1.820 2.196 sum -4.752 2.092 -0.582 5.225 Atomic orbital electron populations 1.23488 0.75237 1.05477 1.02350 1.86517 1.24700 1.33603 1.83739 1.24585 0.93578 0.80803 0.70936 1.90669 1.68379 1.37382 1.47007 1.21568 0.84856 1.00597 1.07746 1.21319 0.94397 0.93756 1.03304 1.22312 0.94142 0.97674 0.97416 0.87379 1.23574 0.97929 0.99261 0.97635 1.22606 0.97641 0.89121 0.89935 0.88680 1.45756 1.15480 1.32211 1.41728 1.17965 0.82008 0.83585 0.80299 1.90783 1.48027 1.41846 1.66108 1.20133 0.96186 0.99981 1.03870 1.26177 1.05081 0.98923 1.02703 1.82943 1.03553 1.26895 1.34870 1.24839 1.02222 1.02416 1.06810 1.24745 0.83524 1.11742 0.95748 1.86611 1.37318 1.56820 1.54565 0.94453 0.86978 0.74828 0.80593 1.20981 0.96694 0.97648 0.95286 1.23381 0.96723 0.97678 0.99193 0.92128 0.85515 0.92133 0.85948 0.85544 0.91333 0.91427 0.88949 0.91304 0.74842 0.77944 0.85253 0.76228 1.17673 1.20147 0.85070 0.90162 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.86 10.56 -51.34 -0.54 -1.40 16 3 C 0.46 1.21 7.96 71.24 0.57 1.78 16 4 O -0.54 -4.97 15.73 21.96 0.35 -4.62 16 5 C -0.11 0.55 5.80 29.85 0.17 0.72 16 6 C -0.09 0.42 4.34 30.60 0.13 0.55 16 7 C -0.10 0.61 3.65 -10.27 -0.04 0.57 16 8 H 0.11 -0.83 8.13 -2.38 -0.02 -0.85 16 9 C -0.15 0.55 7.43 31.12 0.23 0.78 16 10 C 0.11 -0.13 4.24 45.52 0.19 0.06 16 11 H 0.10 0.36 7.46 -2.39 -0.02 0.35 16 12 N -0.70 0.64 5.32 -443.51 -2.36 -1.72 16 13 C 0.57 3.89 7.79 86.59 0.67 4.57 16 14 O -0.59 -9.55 16.40 -4.15 -0.07 -9.62 16 15 C -0.18 -0.55 5.98 -19.87 -0.12 -0.67 16 16 C -0.19 0.86 10.38 67.30 0.70 1.55 16 17 S 0.25 -1.32 20.18 -56.49 -1.14 -2.46 16 18 C -0.25 -0.03 5.68 24.51 0.14 0.11 16 19 C -0.05 0.02 2.95 71.24 0.21 0.23 16 20 O -0.54 -1.78 12.85 -148.98 -1.91 -3.69 16 21 Si 0.73 -2.51 30.91 68.60 2.12 -0.39 16 22 C -0.08 -0.39 9.91 22.67 0.22 -0.17 16 23 C -0.13 0.77 7.39 31.12 0.23 1.00 16 24 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 25 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 27 H 0.12 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.13 -1.07 8.14 -2.39 -0.02 -1.09 16 29 H 0.07 -0.18 8.10 -2.39 -0.02 -0.19 16 30 H 0.07 -0.19 7.80 -2.38 -0.02 -0.21 16 31 H 0.09 -0.43 7.90 -2.39 -0.02 -0.45 16 32 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.41 -3.13 7.22 -92.71 -0.67 -3.80 16 34 H 0.20 -2.41 7.01 -2.91 -0.02 -2.43 16 35 H 0.13 -0.20 7.96 -2.38 -0.02 -0.21 16 36 H 0.39 -1.12 8.70 -74.06 -0.64 -1.77 16 37 H -0.25 0.33 7.11 99.48 0.71 1.04 16 38 H -0.28 -0.98 7.11 99.48 0.71 -0.27 16 39 H 0.13 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.10 -0.79 8.08 -2.39 -0.02 -0.81 16 Total: 0.00 -24.46 363.63 0.74 -23.72 By element: Atomic # 1 Polarization: -11.85 SS G_CDS: -0.21 Total: -12.07 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 4.51 Total: 12.25 kcal Atomic # 7 Polarization: 0.64 SS G_CDS: -2.36 Total: -1.72 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -2.18 Total: -19.33 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.12 Total: -0.39 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -1.14 Total: -2.46 kcal Total: -24.46 0.74 -23.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.058 kcal (2) G-P(sol) polarization free energy of solvation -24.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds