Wall clock time and date at job start Sun Mar 7 2021 01:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99660 * 2 1 4 4 O 1.20818 * 120.00144 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99666 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47357 * 300.00418 * 5 3 2 7 7 C 1.53000 * 109.47173 * 60.00725 * 5 3 2 8 8 C 1.52999 * 109.47657 * 179.97438 * 7 5 3 9 9 C 1.53003 * 109.46622 * 299.99952 * 8 7 5 10 10 H 1.08996 * 109.47182 * 299.99552 * 9 8 7 11 11 N 1.46501 * 109.46654 * 179.97438 * 9 8 7 12 12 C 1.34780 * 120.00198 * 85.00215 * 11 9 8 13 13 O 1.21580 * 119.99587 * 359.97438 * 12 11 9 14 14 C 1.47661 * 120.00308 * 180.27064 * 12 11 9 15 15 C 1.40010 * 120.45207 * 353.74800 * 14 12 11 16 16 N 1.31306 * 121.37533 * 179.72054 * 15 14 12 17 17 C 1.32824 * 121.88745 * 0.58911 * 16 15 14 18 18 N 1.37153 * 132.96008 * 179.70895 * 17 16 15 19 19 C 1.36950 * 110.11379 * 179.97438 * 18 17 16 20 20 C 1.34180 * 109.95052 * 359.97438 * 19 18 17 21 21 C 1.50695 * 126.60082 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.47279 * 255.00313 * 21 20 19 23 23 Si 1.86309 * 109.46893 * 14.99850 * 21 20 19 24 24 C 1.41022 * 120.08754 * 359.68128 * 17 16 15 25 25 C 1.39285 * 119.61426 * 0.02562 * 24 17 16 26 26 C 1.50695 * 121.03000 * 179.97438 * 25 24 17 27 27 C 1.52999 * 109.47335 * 60.00168 * 9 8 7 28 28 C 1.52998 * 109.47188 * 180.02562 * 5 3 2 29 29 H 1.08997 * 109.46642 * 299.99262 * 1 2 3 30 30 H 1.09001 * 109.47011 * 59.99819 * 1 2 3 31 31 H 1.09006 * 109.46816 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47071 * 299.99855 * 7 5 3 33 33 H 1.09004 * 109.47397 * 59.99359 * 7 5 3 34 34 H 1.08998 * 109.47488 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47101 * 59.99347 * 8 7 5 36 36 H 0.96998 * 120.00012 * 264.99985 * 11 9 8 37 37 H 1.08001 * 119.30929 * 0.02562 * 15 14 12 38 38 H 0.96997 * 124.94586 * 359.95848 * 18 17 16 39 39 H 1.08003 * 125.02564 * 179.97438 * 19 18 17 40 40 H 1.08997 * 109.47883 * 134.99882 * 21 20 19 41 41 H 0.96698 * 114.00207 * 180.02562 * 22 21 20 42 42 H 1.48501 * 109.99805 * 178.68508 * 23 21 20 43 43 H 1.48496 * 109.99828 * 300.00031 * 23 21 20 44 44 H 1.08998 * 109.47350 * 263.72962 * 26 25 24 45 45 H 1.09003 * 109.47398 * 23.73518 * 26 25 24 46 46 H 1.09008 * 109.47398 * 143.73275 * 26 25 24 47 47 H 1.08996 * 109.47489 * 59.99571 * 27 9 8 48 48 H 1.08999 * 109.47341 * 179.97438 * 27 9 8 49 49 H 1.09003 * 109.47014 * 60.00178 * 28 5 3 50 50 H 1.09001 * 109.47504 * 300.00552 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8907 7 6 4.1139 0.5813 -1.2484 8 6 5.6417 0.6618 -1.2482 9 6 6.0749 2.1292 -1.2485 10 1 5.6852 2.6229 -2.1387 11 7 7.5379 2.2064 -1.2478 12 6 8.2169 2.1399 -2.4101 13 8 7.6152 2.0154 -3.4593 14 6 9.6918 2.2117 -2.4089 15 6 10.3882 2.4790 -1.2240 16 7 11.6996 2.5415 -1.2011 17 6 12.4296 2.3668 -2.2969 18 7 13.7805 2.3873 -2.5331 19 6 14.0307 2.1448 -3.8575 20 6 12.8758 1.9614 -4.5155 21 6 12.7157 1.6701 -5.9854 22 8 12.2562 2.8451 -6.6565 23 14 14.3566 1.1497 -6.6977 24 6 11.8005 2.0989 -3.5302 25 6 10.4113 2.0195 -3.5914 26 6 9.7060 1.7355 -4.8924 27 6 5.5275 2.8229 0.0005 28 6 4.0001 2.7421 0.0011 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8048 -0.4640 -1.2484 33 1 3.7244 1.0752 -2.1386 34 1 6.0317 0.1681 -2.1382 35 1 6.0315 0.1681 -0.3580 36 1 8.0179 2.3054 -0.4107 37 1 9.8354 2.6321 -0.3089 38 1 14.4598 2.5501 -1.8601 39 1 15.0125 2.1069 -4.3061 40 1 11.9903 0.8677 -6.1200 41 1 12.1302 2.7305 -7.6084 42 1 14.2055 0.8291 -8.1398 43 1 15.3543 2.2352 -6.5207 44 1 9.3880 2.6743 -5.3459 45 1 10.3858 1.2172 -5.5687 46 1 8.8338 1.1094 -4.7039 47 1 5.9173 2.3292 0.8906 48 1 5.8365 3.8682 0.0005 49 1 3.6101 3.2360 0.8911 50 1 3.6107 3.2365 -0.8888 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_12890568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:33:56 Heat of formation + Delta-G solvation = -82.344839 kcal Electronic energy + Delta-G solvation = -34098.542920 eV Core-core repulsion = 29478.809883 eV Total energy + Delta-G solvation = -4619.733036 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.83765 -41.83524 -41.06512 -39.32617 -38.53311 -37.81905 -37.52714 -35.61354 -34.90683 -32.20152 -31.91709 -31.77183 -30.36040 -28.94996 -28.43860 -26.46854 -25.19816 -24.34576 -23.82091 -23.70290 -22.03260 -21.64257 -20.88958 -20.32608 -19.23518 -18.77932 -18.56371 -18.48780 -17.86944 -17.65578 -17.41467 -17.20331 -16.61170 -16.49179 -15.88517 -15.82583 -15.46359 -15.15664 -15.11529 -14.96697 -14.92393 -14.70270 -14.27488 -14.12410 -14.10297 -13.93653 -13.72075 -13.64274 -13.53221 -13.26848 -13.26132 -13.06793 -12.98307 -12.66407 -12.56496 -12.35101 -12.15241 -11.97883 -11.84606 -11.54408 -11.44592 -11.33264 -11.18549 -11.08891 -10.42737 -10.22666 -10.09620 -9.60096 -9.11723 -4.85700 -0.32725 -0.05923 1.10697 1.33204 1.39813 1.62523 1.71159 1.72221 1.83215 2.00337 2.09187 2.77372 3.32243 3.39015 3.50884 3.58795 3.62305 3.67595 3.69568 3.78821 3.80606 3.96287 4.11703 4.13324 4.18314 4.21469 4.28123 4.29399 4.31726 4.33301 4.34657 4.39697 4.46910 4.61033 4.65544 4.69061 4.72705 4.80315 4.81716 4.96380 5.01632 5.07931 5.12528 5.13996 5.18420 5.25468 5.29640 5.31091 5.36775 5.42315 5.55368 5.74161 6.22658 6.53017 6.66291 6.66364 6.84235 7.21874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.541 6.541 5 C -0.075 4.075 6 H 0.138 0.862 7 C -0.102 4.102 8 C -0.120 4.120 9 C 0.144 3.856 10 H 0.067 0.933 11 N -0.708 5.708 12 C 0.572 3.428 13 O -0.565 6.565 14 C -0.241 4.241 15 C 0.181 3.819 16 N -0.516 5.516 17 C 0.288 3.712 18 N -0.560 5.560 19 C 0.087 3.913 20 C -0.161 4.161 21 C -0.061 4.061 22 O -0.558 6.558 23 Si 0.776 3.224 24 C -0.167 4.167 25 C 0.061 3.939 26 C -0.112 4.112 27 C -0.115 4.115 28 C -0.099 4.099 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.198 0.802 38 H 0.439 0.561 39 H 0.216 0.784 40 H 0.082 0.918 41 H 0.391 0.609 42 H -0.291 1.291 43 H -0.278 1.278 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 -5.255 3.451 8.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.431 6.431 5 C -0.094 4.094 6 H 0.156 0.844 7 C -0.141 4.141 8 C -0.158 4.158 9 C 0.040 3.960 10 H 0.085 0.915 11 N -0.360 5.360 12 C 0.360 3.640 13 O -0.445 6.445 14 C -0.248 4.248 15 C 0.013 3.987 16 N -0.229 5.229 17 C 0.055 3.945 18 N -0.167 5.167 19 C -0.040 4.040 20 C -0.168 4.168 21 C -0.168 4.168 22 O -0.368 6.368 23 Si 0.679 3.321 24 C -0.174 4.174 25 C 0.053 3.947 26 C -0.167 4.167 27 C -0.153 4.153 28 C -0.137 4.137 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.252 0.748 37 H 0.214 0.786 38 H 0.280 0.720 39 H 0.232 0.768 40 H 0.100 0.900 41 H 0.241 0.759 42 H -0.217 1.217 43 H -0.205 1.205 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.119 0.881 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.678 -4.462 3.564 8.053 hybrid contribution -1.305 0.960 -1.117 1.968 sum 4.373 -3.502 2.446 6.113 Atomic orbital electron populations 1.23512 0.75210 1.05576 1.02324 1.86510 1.24618 1.33170 1.83562 1.24413 0.93108 0.80959 0.70918 1.90671 1.68187 1.37486 1.46752 1.21262 0.84940 0.99837 1.03312 0.84390 1.21429 0.95627 1.01602 0.95395 1.21849 0.94434 0.96114 1.03443 1.21032 0.78799 0.96457 0.99718 0.91523 1.45795 1.07338 1.74113 1.08740 1.17954 0.86397 0.75664 0.83978 1.90742 1.70561 1.50959 1.32254 1.20525 0.94001 1.14647 0.95625 1.23022 0.87656 0.90826 0.97234 1.66524 1.07882 1.19815 1.28664 1.18763 0.86318 0.99076 0.90382 1.41558 1.04245 1.60741 1.10113 1.22220 1.00352 0.99615 0.81813 1.19720 0.91121 1.12144 0.93792 1.24537 1.11299 0.90319 0.90691 1.86601 1.88269 1.35830 1.26075 0.94186 0.73743 0.84603 0.79598 1.19742 0.93246 1.09360 0.95052 1.20078 0.91248 0.87808 0.95590 1.21004 1.00476 1.02593 0.92663 1.21749 0.93984 1.02122 0.97442 1.21347 0.95681 0.93217 1.03457 0.91994 0.92361 0.85300 0.89431 0.92504 0.92376 0.89033 0.74768 0.78593 0.72001 0.76780 0.90042 0.75884 1.21744 1.20492 0.91267 0.90535 0.89575 0.88114 0.89856 0.90268 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.18 16 2 O -0.36 -1.10 10.47 -51.43 -0.54 -1.64 16 3 C 0.46 2.02 7.26 71.24 0.52 2.54 16 4 O -0.54 -6.02 15.73 21.99 0.35 -5.67 16 5 C -0.07 0.18 2.63 -11.54 -0.03 0.15 16 6 H 0.14 -1.02 8.14 -2.39 -0.02 -1.04 16 7 C -0.10 0.22 5.14 30.59 0.16 0.38 16 8 C -0.12 0.34 5.49 30.59 0.17 0.51 16 9 C 0.14 -0.30 2.45 44.99 0.11 -0.19 16 10 H 0.07 0.26 7.58 -2.39 -0.02 0.24 16 11 N -0.71 1.76 5.03 -445.57 -2.24 -0.48 16 12 C 0.57 2.95 7.69 86.73 0.67 3.61 16 13 O -0.56 -6.84 13.15 -3.97 -0.05 -6.89 16 14 C -0.24 -1.24 5.89 -19.99 -0.12 -1.36 16 15 C 0.18 0.26 10.67 85.20 0.91 1.17 16 16 N -0.52 -2.62 10.37 -191.74 -1.99 -4.61 16 17 C 0.29 1.55 8.42 134.02 1.13 2.68 16 18 N -0.56 0.69 6.04 -192.24 -1.16 -0.47 16 19 C 0.09 -0.22 10.44 82.97 0.87 0.65 16 20 C -0.16 -0.41 5.61 -18.64 -0.10 -0.52 16 21 C -0.06 0.02 2.05 71.23 0.15 0.17 16 22 O -0.56 -1.68 12.86 -148.98 -1.92 -3.59 16 23 Si 0.78 -3.67 30.80 68.60 2.11 -1.56 16 24 C -0.17 -1.16 6.16 -20.19 -0.12 -1.28 16 25 C 0.06 0.49 5.98 -19.25 -0.12 0.38 16 26 C -0.11 -0.85 8.69 71.23 0.62 -0.23 16 27 C -0.12 0.74 5.39 30.58 0.16 0.90 16 28 C -0.10 0.21 4.49 30.58 0.14 0.35 16 29 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 30 H 0.06 0.04 8.13 -2.39 -0.02 0.02 16 31 H 0.13 -0.79 8.14 -2.38 -0.02 -0.81 16 32 H 0.09 -0.25 8.11 -2.39 -0.02 -0.27 16 33 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.41 -3.72 6.68 -92.71 -0.62 -4.34 16 37 H 0.20 -1.46 6.43 -2.91 -0.02 -1.47 16 38 H 0.44 -3.10 8.96 -92.71 -0.83 -3.93 16 39 H 0.22 -2.11 6.31 -2.91 -0.02 -2.13 16 40 H 0.08 -0.16 6.05 -2.39 -0.01 -0.18 16 41 H 0.39 -1.85 8.74 -74.06 -0.65 -2.50 16 42 H -0.29 -0.17 7.11 99.48 0.71 0.53 16 43 H -0.28 0.13 7.04 99.48 0.70 0.83 16 44 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 0.34 5.05 -2.39 -0.01 0.33 16 46 H 0.09 0.84 5.94 -2.38 -0.01 0.82 16 47 H 0.10 -1.12 8.14 -2.39 -0.02 -1.14 16 48 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 49 H 0.08 -0.12 8.10 -2.39 -0.02 -0.14 16 50 H 0.06 0.12 8.10 -2.39 -0.02 0.10 16 Total: 0.00 -29.13 401.06 -0.18 -29.31 By element: Atomic # 1 Polarization: -14.44 SS G_CDS: -1.04 Total: -15.48 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.29 Total: 11.09 kcal Atomic # 7 Polarization: -0.18 SS G_CDS: -5.39 Total: -5.57 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -2.16 Total: -17.79 kcal Atomic # 14 Polarization: -3.67 SS G_CDS: 2.11 Total: -1.56 kcal Total: -29.13 -0.18 -29.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_12890568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.033 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds